Index

A

A (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property) a_func() (in module molass_legacy.Theory.SolidSphere) AbcTrial_impl() (in module molass_legacy.Tools.EmbedCushion) abort() (DebugPlot method) abs2() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) abs2_fast() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) Absorbance (class in molass_legacy.UV.Absorbance) absorbance_update_tracer() (SettingsDialog method) AbsorbancePlot (class in molass_legacy.UV.AbsorbancePlot) AbsorbanceSaveDialog (class in molass_legacy.UV.AbsorbanceSaveDialog) AbsorbanceViewer (class in molass_legacy.UV.AbsorbanceViewer) AbsorbanceViewerPub (class in molass_legacy.UV.AbsorbanceViewerPub) accept_job() (DenssManager method) (Manager method) accept_test() (BasicOptimizer method) ACCEPTABLE_BASIC_QUALITY (in module molass_legacy.AutorgKek.IntensityData) activate() (Table method) activate_cell() (TkMiniTable method) activate_manager() (in module molass_legacy.DENSS.DenssManager) (in module molass_legacy.MultiProc.Manager) adapt_params() (LrfSource method) adapted_decompose_elution_simply() (in module molass_legacy.Selective.AdvancedAdapter) AdapterQualiy (class in molass_legacy.GuinierAnalyzer.AutorgKekAdapter) adaptive_chebfit() (in module molass_legacy.Prob.itsample) add() (DraggableCurves method) (RecentFolders method) add_a_chart() (in module molass_legacy.Reports.ExcelEnvDepend) add_adjust_polygon() (ElutionMapperPlotter method) add_annonations() (GuinierAnalysisResultBook method) add_annonations_less_multicore() (GuinierAnalysisResultBook method) add_annonations_more_multicore() (GuinierAnalysisResultBook method) add_basesurface() (ScatteringPlot method) add_bind_mousewheel() (ScrolledFrame method) add_boundary_line() (in module molass_legacy.Reports.ZeroExExcelFormatter) add_conc_depend_info() (JudgeHolder method) add_constant() (in module molass_legacy.KekLib.OurStatsModels) add_corresponding_peaks() (PeakMapper method) add_datgnom_format_setting() (in module molass_legacy.Reports.DatgnomExcelFormatter) add_dnd_bind() (DenssGuiDialog method) (EdViewer method) (EntryFrame method) (ExtrapolSolverDialog method) (FileNodeEntry method) (SaxsSimulator method) (ScatteringCurvePlotter method) add_exclspline() (RgCurve method) add_flow_change_annotation() (in module molass_legacy.SerialAnalyzer.PlotAnnotation) add_focus_event_binds() (EntryFrame method) add_format_setting() (DatgnomResultBook method) (SummaryBook method) (ZeroExtrapolationOverlayBook method) (ZeroExtrapolationResultBook method) add_format_setting_less_multicore() (DatgnomResultBook method) (SummaryBook method) (ZeroExtrapolationOverlayBook method) (ZeroExtrapolationResultBook method) add_format_setting_more_multicore() (DatgnomResultBook method) (SummaryBook method) (ZeroExtrapolationOverlayBook method) (ZeroExtrapolationResultBook method) add_format_setting_to_extrapolated_chart() (in module molass_legacy.Reports.ZeroExExcelFormatter) add_frame() (DebugPlot method) add_guinier_annonations() (in module molass_legacy.Reports.GuinierExcelFormatter) add_ImplicitH() (PDB method), [1] add_mousewheel_bind() (TkMiniTable method) add_new_components() (ParamsAdjuster method) add_new_job() (FullOptDialog method) add_other_peaks() (ElutionDecomposer method) add_overlay_format_setting() (in module molass_legacy.Reports.ZeroExExcelFormatter) add_peak_at_diff_top_x() (ElutionDecomposer method) add_peaks() (ElutionCurve method) add_popup_menu_bind() (DataRestrictor2dFrame method) add_pre_recog() (StandardProcedure method) add_range_patches() (ElutionMapperPlotter method) add_range_patchs() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) add_result_format_setting() (in module molass_legacy.Reports.ZeroExExcelFormatter) add_smoother() (IntensityData method) add_summary_format_setting() (in module molass_legacy.Reports.SummaryExcelFormatter) add_toolbar() (OutlineViewer2dFrame method) add_widgets() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) addHandler() (Logger method) adjust() (PilatusImage method) (PlateauRegions method) adjust_baselines() (ElutionMapper method) adjust_both_baselines() (ElutionMapper method) adjust_both_opt_results() (ElutionMapper method) adjust_ex_sigmoid() (in module molass_legacy.Trimming.Sigmoid) adjust_geometry() (AbsorbanceSaveDialog method) (ConcOptsDialog method) (DebugCanvas method) (PreviewResultSaverDialog method) (QmmResultSaverDialog method) (ScatteringSaveDialog method) adjust_heights() (EditCanvas method) adjust_peak_heights() (in module molass_legacy.QuickAnalysis.ModeledPeaks) adjust_the_tkframe_size() (in module molass_legacy.KekLib.TkMplUtils) adjust_to_poresize() (in module molass_legacy.SecTheory.PoresizeFreedom) adjust_to_qrg_limits() (AutorgKek method) adjust_uv_baseline_only() (ElutionMapper method) adjust_uv_opt_results() (ElutionMapper method) adjust_with_mf() (LPM_3d method) adjust_xlim_mapping() (ComplementaryView method) adjust_xray_baseline_only() (ElutionMapper method) adjust_xray_opt_results() (ElutionMapper method) adjusted_cmap() (CmapAlbulaLikeDynamic method) (Diverging method) adjusted_geometry() (in module molass_legacy.KekLib.TkUtils) AdvancedFrame (class in molass_legacy.Selective.AdvancedFrame) Affine (class in molass_legacy.KekLib.Affine) AffineDemoDialog (class in molass_legacy.SerialAnalyzer.AffineDemo) after_construction_proc() (EntryFrame method) align() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) align2xyz() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) align_multiple() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) align_yaxis_np() (in module molass_legacy.KekLib.PlotUtils) all_known_errors() (in module molass_legacy.Synthesizer.ErrorLogCheck) AllParameters (class in molass_legacy.Optimizer.AllParameters) Almerge (class in molass_legacy.ReAtsas.Almerge) AlmergeAnalyzerDialog (class in molass_legacy.Extrapolation.AlmergeAnalyzer) AlmergePlotter (class in molass_legacy.ReAtsas.AtsasPlotter) AlMergeSolver (class in molass_legacy.Extrapolation.ExtrapolationProof) already_decomposed() (AnalysisGuide method) AlterButton() (in module molass_legacy.KekLib.HookableMessageBox) AlterIcon() (in module molass_legacy.KekLib.HookableMessageBox) aminate() (in module molass_legacy.MD.LjDemo) (in module molass_legacy.MD.NzDemo) AnalysisGuide (class in molass_legacy.QuickAnalysis.AnalysisGuide) AnalysisGuideInfo (class in molass_legacy.QuickAnalysis.AnalysisGuide) AnalysisRangeInfo (class in molass_legacy.DataStructure.AnalysisRangeInfo) analyze() (LogicalExpression method) Analyzer (class in molass_legacy.QuickAnalysis.Analyzer) AnalyzerDialogProxy (class in molass_legacy.QuickAnalysis.AnalyzerDialogProxy) angle() (in module molass_legacy.KekLib.OurManim) angular_index_tracer() (InspectionInAnglesDialog method) anim_dict (Collection attribute) anim_init() (McAnimation method) animate() (AnimatedHistogram method) (Animation method) (Arrow method) (Camera method) (Circles method) (Collection method) (DiscretePdf method) (GMM method) (McAnimation method) (MmAnimator method) (Parallelogram method) (TextGroup method) (VisSurface method) animate_annealing() (in module molass_legacy.KekLib.SimulatedAnnealing) (in module molass_legacy.SerialAnalyzer.SimulatedAnnealing)

animate_gmm_elution() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) (in module molass_legacy.Prob.SklMixtureUtils) animate_trace_2d() (GdTreedPlot method) animate_trace_3d() (GdTreedPlot method) AnimatedHistogram (class in molass_legacy.Prob.AnimatedHistogram) Animation (class in molass_legacy.KekLib.OurManim) animation() (in module molass_legacy.SecTheory.EdmDemo) animation_example() (in module molass_legacy.SerialAnalyzer.LPM_Animation) animation_example2() (in module molass_legacy.SerialAnalyzer.LPM_Animation) AnimMapper (class in molass_legacy.SerialAnalyzer.AnimObjects) Anisotropy (class in molass_legacy.Theory.Anisotropy) (class in molass_legacy.Theory.RoigSolvas2019) annotate() (in module molass_legacy.KekLib.DebugPlot) Annotation3D (class in molass_legacy.KekLib.MatplotlibUtils) AnyObject (class in molass_legacy.AutorgKek.LightObjects) aplly_new_range() (UnknownControlPanel method) App (class in molass_legacy.Prob.QmmMenu) AppAgent (class in molass_legacy.KekLib.TkTester) append() (Animation method) (Collection method) (ParammedModel method) (SummaryBook method) append_result() (FullOptDialog method) apply() (AlmergeAnalyzerDialog method) (AnalyzerDialogProxy method) (BackgroundMaker2dFrame method) (BackgroundMakerDialog method) (ConcOptsDialog method) (CreateFolderDialog method) (CrysolResultsEntry method) (DataRangeDialog method) (DebugPlot method) (DecompEditorDialog method) (DecompEditorFrame method) (DelayAdjuster method) (DenssFitDataDialog method) (DenssManagerDialog method) (DeveloperOptionsDialog method), [1] (Dialog method) (EditCanvas method) (ElutionCurvePicker method) (ElutionCurvePicker2dFrame method) (ElutionMapperCanvas method) (ExtrapolSolverDialog method) (FolderEntryDialog method) (FunctionChanger method) (LpmInspector method) (ManagerDialog method) (ManualAdjuster method) (ModifyStateDialog method) (OptStrategyDialog method) (PdbFetcherDialog method) (PeakEditor method) (PreferencesDialog method) (PreparationProgress method) (PreprocessDialog method) (ProofViewer method) (QmmOptionsDialog method) (QmmWindowSetting method) (RangeEditorDialog method) (RangeEditorFrame method) (RangeInspectorDialog method) (RankViewParamsDialog method) (RestartPatcher method) (RestoreSettingDialog method) (ResultFolderSelector method) (RgCurveComputerDialog method) (Scattering3dPlotDialog method) (Scattering3dSimpleDialog method) (SettingsDialog method) (SimpleTutorial method) (SpecialistOptionsDialog method) (TesterDialog method) (TextShowDialog method) (UnfoldingTutorial method) (UpdateDailog method) (VariedPropAnalysis method) apply_baseline_correction() (DataSet method) (SerialData method) apply_baseline_correction_impl() (in module molass_legacy.SerialAnalyzer.ScatteringBaseUtil) apply_data_reduction() (SerialData method) apply_entries() (ConcFactorsEntry method) apply_filter() (DataFilter method) apply_fit_data() (DenssGuiDialog method) apply_mw_integrity_tracer() (OptStrategyDialog method) apply_new_peaks() (in module molass_legacy.Peaks.PeakEditorUtils) apply_patch() (in module molass_legacy.KekLib.DiffUtils) apply_restriction() (RawUv method) (RawXray method) apply_rg_discreteness_tracer() (OptStrategyDialog method) apply_simulated_baseline_correction() (in module molass_legacy.SerialAnalyzer.DriftSimulation) approx_boundary() (in module molass_legacy.Simulative.SimulationCushion) approx_intensities() (Anisotropy method) AqBqSimilarityDialog (class in molass_legacy.Conc.AqBqSimilarity) are_all_single_bytes() (in module molass_legacy.GuiParts.NonAsciiPaths) arg_join() (in module molass_legacy.KekLib.ChangeableLogger) arg_less_percentile() (in module molass_legacy.KekLib.NumpyUtils) arg_more_percentile() (in module molass_legacy.KekLib.NumpyUtils) ArgParser (class in molass_legacy.KekLib.ArgParser) args (partial attribute) ArrayVar (class in molass_legacy.KekLib.TkTableWrapper) Arrow (class in molass_legacy.KekLib.OurManim) Arrow3D (class in molass_legacy.Tutorials.LPM) as_list() (PairedRange method) ask_cancel() (DenssGuiDialog method) (PreparationProgress method) askdirectory() (EntryFrame method) askokcancel() (in module molass_legacy.KekLib.CustomMessageBox) (in module molass_legacy.KekLib.OurMessageBox) askquestion() (in module molass_legacy.KekLib.OurMessageBox) askretrycancel() (in module molass_legacy.KekLib.OurMessageBox) askyesno() (in module molass_legacy.KekLib.CustomMessageBox) (in module molass_legacy.KekLib.OurMessageBox) askyesnocancel() (in module molass_legacy.KekLib.OurMessageBox) assert_almost_equal() (in module molass_legacy.KekLib.NoseUtils) assert_shape_equal() (in module molass_legacy.DMM.discrete_rv) asymptotical() (in module molass_legacy.Optimizer.Asymptotical) at_exit() (ResultGui method) ATSAS_COLOR (in module molass_legacy.Reports.ZeroExtrapolationResultBook) atsas_exec_check() (in module molass_legacy.ATSAS.ExecCheck) atsas_version_for_publication() (in module molass_legacy.ATSAS.AtsasVersion) attach_figure() (MplCanvas method) Attribute (class in molass_legacy.KekLib.TkTester) auto_cdi_for_all() (ExtrapolSolverDialog method) auto_denoise_rank_tracer() (QmmOptionsDialog method) auto_inspection() (RangeInspectorDialog method) auto_n_components_tracer() (QmmOptionsDialog method) auto_navigate_no_decomp() (ElutionMapperCanvas method) auto_navigate_to_decomp_editor() (ElutionMapperCanvas method) auto_numbered_file() (in module molass_legacy.KekLib.BasicUtils) auto_run_widgets_disable() (EntryFrame method) auto_run_widgets_enable() (EntryFrame method) AutoExecManager (class in molass_legacy.Tools.AutoExecManager) autoguinier_version_for_publication() (in module molass_legacy.AutorgKek.AppVersion) AutomationDialog (class in molass_legacy.Test.Automation) AutoRangeInspector (class in molass_legacy.Extrapolation.AutoRangeInspector) AutoRestrictor (class in molass_legacy.Trimming.AutoRestrictor) AutoRestrictorProxy (class in molass_legacy.Trimming.AutoRestrictorProxy) autorg() (in module molass_legacy.AutorgKek.AtsasTools) (in module molass_legacy.AutorgKek.KekTools) (in module molass_legacy.AutorgKek.KekToolsGP) autorg_func() (in module molass_legacy.AutorgKek.CommandMain) AutorgKek (class in molass_legacy.AutorgKek.KekTools) (class in molass_legacy.AutorgKek.KekToolsGP) AutorgKekAdapter (class in molass_legacy.GuinierAnalyzer.AutorgKekAdapter) AutorgRunner (class in molass_legacy.ATSAS.AutorgRunner) AutoVivifiedDict (class in molass_legacy.KekLib.BasicUtils) autowrap_text() (in module molass_legacy.ATSAS.CorMapAnalysis) available_counters() (Counter method) average_impl() (in module molass_legacy.SecTools.DataAverager) average_pairs() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) average_two() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) AverageMakerDialog (class in molass_legacy.SecTools.AverageMakerDialog) AverageSubtractorDialog (class in molass_legacy.Microfluidics.AverageSubtractorDialog) AveragingDiscussion (class in molass_legacy.SerialAnalyzer.AveragingDiscussion) avgrerrf() (Sasrec method), [1] axes() (in module molass_legacy.KekLib.DebugPlot)

B

B2u() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) b_to_a_func() (in module molass_legacy.Theory.SolidSphere) b_v_tradeoff_comb() (in module molass_legacy.GuinierTools.Alsaker2017) back_() (InvestigatorDialog method) BackgroundMaker2dFrame (class in molass_legacy.Microfluidics.BackgroundMaker) BackgroundMakerDialog (class in molass_legacy.Microfluidics.BackgroundMaker) BackgroundMakerFrame (class in molass_legacy.Microfluidics.BackgroundMaker) BackRunner (class in molass_legacy.Optimizer.BackRunner) ball_demo() (in module molass_legacy.Saxs.PhaseRetrievalDemo) BallVoxels (class in molass_legacy.Saxs.SaxsSamples) base_percentile_offset() (in module molass_legacy.SerialAnalyzer.BasePercentileOffset) BaseEstimater (class in molass_legacy.Baseline.BaseEstimater) BaseEstimator (class in molass_legacy.Estimators.BaseEstimator) baseline_adjust_tracer() (ElutionMapperAdjuster method) baseline_correct_simply() (OptimalSmoothing method) baseline_inspect_impl() (in module molass_legacy.Baseline.Inspect) baseline_manually_tracer() (LpmInspector method) baseline_objective() (BaselineOptimizer method) BaselineGuinier (class in molass_legacy.Baseline.BaselineGuinier) BaselineOptimizer (class in molass_legacy.Optimizer.BaselineOptimizer) BasePlane (class in molass_legacy.Baseline.LambertBeer) basescattering_correct() (in module molass_legacy.Baseline.BaseScattering) BaseSliderInfo (class in molass_legacy.ModelParams.BaseSliderInfo) BaseSurface (class in molass_legacy.DataStructure.BaseSurface) BaseSurfaceSpike (class in molass_legacy.Baseline.LambertBeerProof) BaseSurfaceSpline (class in molass_legacy.SerialAnalyzer.BaseSurfaceSpline) basic_demo() (in module molass_legacy.Trimming.SigmoidDemo) BasicOptimizer (class in molass_legacy.Optimizer.BasicOptimizer) bbox() (Table method) BeamAnim (class in molass_legacy.Wave.Circle) BeamAnimDialog (class in molass_legacy.Wave.Beam) (class in molass_legacy.Wave.Scattering1) (class in molass_legacy.Wave.Scattering2) (class in molass_legacy.Wave.ScatteringN) bent_sigmoid() (in module molass_legacy.Trimming.Sigmoid) bent_sigmoid_inv() (in module molass_legacy.Trimming.Sigmoid) BestPercentile (class in molass_legacy.DataStructure.LPM) better_integrative_curve() (in module molass_legacy.Baseline.Baseline) bh_estimator() (in module molass_legacy.Solvers.NcallsEstimator) BicomponentSimulator (class in molass_legacy.SerialAnalyzer.DriftSimulation) BiComponentSolver (class in molass_legacy.AutorgKek.BiComponentSolver) BidirectFft (class in molass_legacy.SecTheory.SecPDF) binary_average() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) bind() (FileNodeEntry method) blink_start() (LpmInspector method), [1] blink_start_tracer() (ElutionMapperAdjuster method) BlinkingFrame (class in molass_legacy.KekLib.TkSupplements) BlinkingLabel (class in molass_legacy.KekLib.TkSizableWidgets) blog_demo() (in module molass_legacy.Gmm.MatsukenGmm) (in module molass_legacy.Gmm.ZhiyaZuoGmm) bo_baseline_trial_impl() (in module molass_legacy.Baseline.BoBaseline) body() (AbsorbanceSaveDialog method) (AbsorbanceViewer method) (AbsorbanceViewerPub method) (AffineDemoDialog method) (AllParameters method) (AlmergeAnalyzerDialog method) (App method) (AqBqSimilarityDialog method) (AutoExecManager method) (AutomationDialog method) (AutoRangeInspector method) (AverageMakerDialog method) (AverageSubtractorDialog method) (BeamAnimDialog method), [1], [2], [3] (BicomponentSimulator method) (BoundaryView method) (BoundsInspection method) (BpaInspector method) (BpoDependencyDemo method) (CanvasDialog method) (CdInspectionDailog method) (CheckEnvDialog method) (ComplementaryView method) (ConcNormalizerDialog method) (ConcOptsDialog method) (ConformanceDemo method) (CreateFolderDialog method) (CrysolResultsEntry method) (CurveSaverDialog method) (DebugCanvas method) (DebugDialog method) (DebugPlot method) (DecompDummyDialog method) (DecompEditorDialog method) (DelayAdjuster method) (Demo method) (DemoDialog method) (DenoiseFigures method) (DenssFitDataDialog method) (DenssGuiDialog method) (DenssManagerDialog method) (DeveloperOptionsDialog method), [1] (Dialog method) (DriftLinearModelDialog method) (DualSpace method) (EditCanvas method) (EdViewer method) (ElutionMapperAnimation method) (ElutionMapperCanvas method) (ElutionModelEditor method) (ElutionTrimmingDialog method) (ExtrapolationAnimationDialog method) (ExtrapolSolverDialog method) (FactorCurvePlot method) (FolderEntryDialog method) (FullOptDialog method) (FunctionChanger method) (FunctionDebugger method) (FvScoreDetails method) (FvScoreInspecor method) (GdAnimationDialog method) (GpuDialog method) (GradualRegionAnalysis method) (GuinierKratkyPlots method) (GuinierRegionInspector method) (GuinierStartSelector method) (IndividualSubtractorDialog method) (InspectionInAnglesDialog method) (InvestigatorDialog method) (LinTranAnim method) (LogDiffDialog method) (LogGuinierKratkyPlotter method) (LpmInspector method), [1] (ManagerDialog method) (ManualAdjuster method) (ManualDecomposer method) (MdViewer method) (MethodAdjusterFrame method) (ModifyStateDialog method) (MpInverseAnim method) (MpInverseAnim3D method) (MplPlotCanvas method) (MwIntegrityPlot method) (MwRgFigure method) (NoExcelWarningDialog method) (OptStrategyDialog method) (OutlineViewerDialog method) (ParameterTransitionPlot method) (ParamsInspection method) (ParamsSelector method) (PdbCrysolRouteDialog method) (PdbFetcherDialog method) (PeakAsymmetry method) (PeakEditor method) (PlatformDialog method) (PreferencesDialog method) (PreparationProgress method) (PreprocessDialog method) (PreSyncViewer method) (PreviewResultSaverDialog method) (ProcessorDialog method) (ProgressDialog method) (ProgressInfoDialog method) (ProgressMinDialog method) (ProofViewer method) (PropOptimizerProgress method) (PropOptimizerResult method) (Qmm3dFigure method) (QmmOptionsDialog method) (QmmResultSaverDialog method) (QmmWindowSetting method) (RangeEditorDialog method) (RangeInspectorDialog method) (RankInspectionFigure method) (RankView method) (RankViewParamsDialog method) (RdAnim method) (ResidualView method) (RestoreSettingDialog method) (ResultFolderSelector method) (RgAnalysisDialog method) (RgCurveComputerDialog method) (RgVisibleFigure method) (SaxsSimulator method) (Scattering3dPlotDialog method) (Scattering3dPlotFrame method) (Scattering3dSimpleDialog method) (Scattering3dSimpleFrame method) (ScatteringCurvePlotter method) (ScatteringCurveViewer method) (ScatteringSaveDialog method) (ScoreTransition method) (SecConformance method) (SecInspection method) (SecSimulator method) (SettingsDialog method) (SimpleTutorial method) (SimulatedExtrapolationDialog method) (SpecialistOptionsDialog method) (SpikeDialog method), [1], [2], [3], [4], [5] (SpotDebugger method) (SsdcAnalysis method) (StrategyEditor method) (SubtractorFrame method) (SvdAnimation method) (SvdDataSaverDialog method) (SvdTutorial method), [1] (SvdViewer method) (TestDialog method) (TesterDialog method) (TesterSimple method) (TextShowDialog method) (ThreeDimErrorViewer method) (ThreeDimViewer method) (TkDebugDnd method) (TrimmingResultDialog method) (TwoParamAnalysis method) (UnfoldingTutorial method) (UpdateDailog method) (VariedPropAnalysis method), [1] (VoxelFFT method)

body_trash() (MethodAdjusterFrame method) both_baseline_adjuster() (ElutionMapper method) boundary_demo() (in module molass_legacy.Rank.Boundary) BoundaryNorm (class in molass_legacy.KekLib.MplUtils) BoundaryView (class in molass_legacy.Optimizer.BoundaryView) bounded_sec_comformance() (BoundedSecParams method) BoundedLrfSolver (class in molass_legacy.BoundedLRF.BoundedLrfSolver) BoundedSecParams (class in molass_legacy.ModelParams.BoundedSecParams) boundef_lrf() (in module molass_legacy.LRF.LrfSolver) boundef_lrf_simple() (in module molass_legacy.LRF.LrfSolver) bounds() (in module molass_legacy.Theory.BoundedLRF) BoundsInspect_impl() (in module molass_legacy.Tools.EmbedCushion) BoundsInspection (class in molass_legacy.Optimizer.BoundsInspection) bpa_right_button() (ElutionMapperAdjuster method) BpaInspector (class in molass_legacy.Baseline.BpaInspect) BpoDependencyDemo (class in molass_legacy.SerialAnalyzer.BpoDependencyDemo) bq_scores_survey() (in module molass_legacy.Theory.Survey) bq_scores_survey_for_a_folder() (in module molass_legacy.Theory.Survey) bq_widgets_update() (UnknownControlPanel method) browsecmd() (PilatusImageInfoTable method) bspleval() (in module molass_legacy.KekLib.SciPyMisc) bspleval_demo() (in module molass_legacy.KekLib.SciPyMisc) bspline_surface() (in module molass_legacy.SerialAnalyzer.LowPercentileSpline) Bt() (in module molass_legacy.Theory.PbMoore1980) (Sasrec method), [1] bubble_check() (in module molass_legacy.SerialAnalyzer.AbnormalityCheck) bubble_check_impl() (in module molass_legacy.SerialAnalyzer.AbnormalityCheck) buf (SharedMemory property), [1] buid_baseline_type_buttons() (LpmInspector method) build_bframe() (BackgroundMaker2dFrame method) (DataRestrictor2dFrame method) (ElutionCurvePicker2dFrame method) (OutlineViewer2dFrame method) build_body() (OutlineViewerFrame method) (SuperEditorFrame method) (SvdFrame method) build_canvas() (DelayAdjuster method) (RangeInspectorDialog method) (SimpleTutorial method) (UnfoldingTutorial method) build_canvas_2d() (SubtractorFrame method) build_canvas_3d() (SubtractorFrame method) build_cframe() (OutlineViewer2dFrame method) build_control_frame() (TwoParamAnalysis method) build_control_panel() (EdViewer method) (SaxsSimulator method) build_control_widgets() (LpmInspector method), [1] build_entryframe() (SimpleTutorial method) (UnfoldingTutorial method) build_figure() (QmmWindowSetting method) build_lower() (PeakEditor method) build_manip_panel() (ManualAdjuster method) build_manipulation_parts() (QmmWindowSetting method) build_mapping_precision_measure_widgets() (ElutionMapperAdjuster method) build_optimize_button() (ElutionMapperAdjuster method) build_other_buttons() (ElutionMapperAdjuster method) build_panel() (FullOptDialog method) (PeakEditor method) (RangeInspectorDialog method) (RdAnim method) (SecSimulator method) build_params_frame() (DelayAdjuster method) build_penalty_widgets() (ElutionMapperAdjuster method) build_sheet() (EghParamsSheet method) (RtEmgParamsSheet method) build_title() (BackgroundMakerFrame method) (ElutionCurvePickerFrame method) build_uv_absorbance_option_widgets() (ElutionMapperAdjuster method) build_uv_absorbance_option_widgets_dummy() (ElutionMapperAdjuster method) build_xray_scattering_option_widgets() (ElutionMapperAdjuster method) builf_control_panel() (InspectionInAnglesDialog method) builf_distinction() (RangeInspectorDialog method) button_command() (ProgressInfoDialog method) button_press() (MplPlotCanvas method) button_press_callback() (DraggableLine method) (in module molass_legacy.KekLib.DraggableArrow) button_release_callback() (DraggableCurves method) (DraggableLine method) (in module molass_legacy.KekLib.DraggableArrow) button_release_user_callback() (EditCanvas method) buttonbox() (AbsorbanceViewer method) (AbsorbanceViewerPub method) (AffineDemoDialog method) (AqBqSimilarityDialog method) (AutomationDialog method) (AverageMakerDialog method) (AverageSubtractorDialog method) (BackgroundMakerDialog method) (BoundaryView method) (BpaInspector method) (CanvasDialog method) (CdInspectionDailog method) (CheckEnvDialog method) (ComplementaryView method) (ConcNormalizerDialog method) (CurveSaverDialog method) (DataRangeDialog method) (DebugCanvas method) (DebugPlot method) (DecompEditorDialog method) (Demo method) (DemoDialog method) (DenssGuiDialog method) (DenssManagerDialog method) (DeveloperOptionsDialog method) (Dialog method) (EditCanvas method) (EdViewer method) (ElutionCurvePicker method) (ElutionMapperCanvas method) (ExtrapolSolverDialog method) (FolderEntryDialog method) (FullOptDialog method) (FunctionDebugger method) (GdAnimationDialog method) (GpuDialog method) (GradualRegionAnalysis method) (GuinierStartSelector method) (IndividualSubtractorDialog method) (InvestigatorDialog method) (LinTranAnim method) (ManagerDialog method) (ManualDecomposer method) (ModifyStateDialog method) (MpInverseAnim method) (MpInverseAnim3D method) (MwIntegrityPlot method) (MwRgFigure method) (NoExcelWarningDialog method) (OptStrategyDialog method) (ParameterTransitionPlot method) (ParamsInspection method) (PdbCrysolRouteDialog method) (PdbFetcherDialog method) (PeakEditor method) (PlatformDialog method) (PreparationProgress method) (PreprocessDialog method) (PreviewResultSaverDialog method) (ProcessorDialog method) (ProgressInfoDialog method) (ProgressMinDialog method) (PropOptimizerProgress method) (QmmResultSaverDialog method) (RangeEditorDialog method) (RankInspectionFigure method) (RankView method) (RdAnim method) (ResidualView method) (ResultFolderSelector method) (SaxsSimulator method) (Scattering3dPlotDialog method) (Scattering3dPlotFrame method) (Scattering3dSimpleDialog method) (Scattering3dSimpleFrame method) (ScatteringCurveViewer method) (ScoreTransition method) (SecConformance method) (SecSimulator method) (SettingsDialog method) (SimulatedExtrapolationDialog method) (SpecialistOptionsDialog method) (SpikeDialog method), [1], [2], [3], [4], [5] (SvdAnimation method) (SvdDataSaverDialog method) (SvdTutorial method) (TesterDialog method) (TextShowDialog method) (TkDebugDnd method) (TrimmingResultDialog method) (TwoParamAnalysis method) (UpdateDailog method) (VariedPropAnalysis method), [1] (VoxelFFT method)

C

C_smooth_penalty_impl() (in module molass_legacy.Decomposer.MatrixFactorization) calc_chi2() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) (PDB2MRC method), [1] (Sasrec method), [1] calc_cormap() (ScatterAnalysis method) calc_debye() (PDB2SAS method), [1] calc_F_with_modified_params() (PDB2MRC method), [1] calc_form_factors() (PDB2SAS method), [1] calc_fsc() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) calc_I() (PDB2SAS method), [1] calc_I_with_modified_params() (PDB2MRC method), [1] calc_likelihood() (GMM method) calc_penalty() (PDB2MRC method), [1] calc_prob_gmm() (GMM method) calc_pwcormap() (ScatterAnalysis method) calc_Rg() (in module molass_legacy.GuinierTools.Alsaker2017) calc_rg_by_guinier_first_2_points() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) calc_rg_by_guinier_peak() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) calc_rg_I0_by_guinier() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) calc_rho0() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) calc_rho_with_modified_params() (PDB2MRC method), [1] calc_score_with_modified_params() (PDB2MRC method), [1] calc_uniform_shell() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) calculate_average_radii() (PDB2MRC method), [1] calculate_distance_matrix() (PDB method), [1] calculate_excluded_volume() (PDB2MRC method), [1] calculate_excluded_volume_in_A3() (PDB2MRC method), [1] calculate_global_B() (PDB2MRC method), [1] calculate_hydration_shell() (PDB2MRC method), [1] calculate_invacuo_density() (PDB2MRC method), [1] calculate_mean_covariance() (GMM method) (GssMixture method) (SmbMixture method) calculate_structure_factors() (PDB2MRC method), [1] Calculate_Temperature() (in module molass_legacy.MD.LjDemo) (in module molass_legacy.MD.NzDemo) calculate_unique_volume() (PDB method), [1] callback() (SmcSolver method) CallbackWrapper (class in molass_legacy.Batch.DataWalk) CallStack (class in molass_legacy.KekLib.CallStack) Camera (class in molass_legacy.KekLib.mplclofa) can_be_deemed_single_peak() (PeakMapper method) can_be_improved() (ResultEvaluator method) can_be_treated_as_usual() (PeakRegion method) cancel() (AbsorbanceViewer method) (AbsorbanceViewerPub method) (CanvasDialog method) (CdInspectionDailog method) (ComplementaryView method) (DebugCanvas method) (DecompEditorDialog method) (Dialog method) (EditCanvas method) (ElutionMapperCanvas method) (ElutionTrimmingDialog method) (ExtrapolSolverDialog method) (FullOptDialog method) (GradualRegionAnalysis method) (GuinierStartSelector method) (LpmInspector method) (OutlineViewerDialog method) (PeakEditor method) (ProgressInfoDialog method) (ProgressMinDialog method) (PropOptimizerProgress method) (RangeEditorDialog method) (ThreeDimViewer method) (TwoParamAnalysis method) cancel_all_jobs() (DenssManagerDialog method) (ManagerDialog method) cancel_job() (DenssManagerDialog method) (ManagerDialog method) cancel_job_impl() (DenssManagerDialog method) (ManagerDialog method) Canvas3D (class in molass_legacy.KekLib.Canvas3D) canvas_draw() (ExtrapolSolverDialog method) canvas_draw1() (SuperEditorFrame method) canvas_draw2() (SuperEditorFrame method) canvas_focus_set() (MappingZoomCanvas method) CanvasDialog (class in molass_legacy.KekLib.CanvasDialog) CanvasFrame (class in molass_legacy.KekLib.CanvasFrame) cap_heights() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) capitalize() (str method) casefold() (str method) cb_clear() (CheckbuttonFrame method) cb_tracer() (DataRestrictor2dFrame method) cb_vars_tracer() (CheckbuttonFrame method) cb_vars_tracer_reset() (CheckbuttonFrame method) cc() (in module molass_legacy.KekLib.OurMatplotlib) CdInspectionDailog (class in molass_legacy.Conc.CdInspection) CdLimit (class in molass_legacy.Trimming.CdLimit) ceate_ConcentrationChart() (GuinierAnalysisResultBook method) ceate_Iz_devided_by_C_Chart() (GuinierAnalysisResultBook method) ceate_IzChart() (GuinierAnalysisResultBook method) ceate_RgChart() (GuinierAnalysisResultBook method) Cell (class in molass_legacy.KekLib.TkMiniTable) CellAddr() (in module molass_legacy.KekLib.ExcelCOM) center() (str method) center_of_circle_from_sphere_intersection() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) center_rho() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) center_rho_roll() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) central_moment() (in module molass_legacy.SymPy.StochasticUtils) centroids (GMM attribute) cf2DistFFT() (in module molass_legacy.CharFunc.cf2DistFFT) cf_optimization_study() (AdvancedFrame method) CfDomain (class in molass_legacy.SecTheory.StochasticSolver) CfDomainOptimizer (class in molass_legacy.CharFunc.CfDomainOptimizer) CfSpace (class in molass_legacy.Models.Characteristic) cget() (SlimButton method) change_baseline_correction_defaults() (in module molass_legacy.Baseline.BaselineGuinier) change_cursor() (ElutionMapperAdjuster method) change_depedent_states() (ElutionMapperCanvas method) change_function() (JobStateCanvas method) change_log_to() (Analyzer method) change_model() (DecompEditorDialog method) (ModelSelectFrame method) change_num_components() (AdvancedFrame method) change_num_components_impl() (in module molass_legacy.Selective.NumComponents) change_plotarea() (ExcelLogChart method) change_reset() (EntryFrame method) change_state() (TwoParamAnalysis method) change_to_corrected_3d() (ScatteringPlot method) change_view_widths() (JobStateCanvas method) change_y_labels() (ExcelLogChart method) change_yaxis_title_area() (ExcelLogChart method) changeto() (Logger method) chart_xfix() (in module molass_legacy.Reports.GuinierExcelFormatter) chebcdf() (in module molass_legacy.Prob.itsample) check() (FileEntry method) (FileNodeEntry method) (FolderEntry method) (UvFolderEntry method) check_abnormality_in_wvlen_ends() (Absorbance method) check_applicability() (in module molass_legacy.Trimming.SigmoidApplicability) check_clicked() (ConformanceDemo method) (PeakAsymmetry method) check_code_text() (in module molass_legacy.Selective.VariedPropAnalysis) check_cupy_cuda_consistency() (GpuInfo method) check_diehardness() (in module molass_legacy.UV.PlainCurve) check_ending_anomaly() (in module molass_legacy.Trimming.EndingAnomaly) check_entries() (EntryFrame method) check_env() (GuiSettingsMenu method) check_if_raw_data() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) check_last_message() (in module molass_legacy.KekLib.OurMessageBox) check_logfiles() (in module molass_legacy.Tools.LogChecker) check_lowest_wlen_anomaly() (UvData method) check_mapping_normality() (ElutionMapper method) check_minimum_mapping_quality() (PeakMapper method) check_module() (PdbFetcherDialog method) check_num_elements() (CompositeInfo method) check_peak_concictency() (ElutionMapper method) check_peak_existence() (PeakMapper method) check_rg_folder() (in module molass_legacy.RgProcess.RgCurve) check_too_many_excluded_neighbor_cells() (FileInfoTable method) check_version_stamp() (in module molass_legacy.AutorgKek.Settings) CheckbuttonFrame (class in molass_legacy.GuinierAnalyzer.SimpleGuinierGuiUtils) CheckEnvDialog (class in molass_legacy.Env.CheckEnvDialog) checkFolder() (in module molass_legacy.KekLib.OurTkinter) CheckoffLabel (class in molass_legacy.KekLib.DisguinsingWidgets) CheckonLabel (class in molass_legacy.KekLib.DisguinsingWidgets) chi2() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) circle_intersect() (in module molass_legacy.KekLib.CircleGeometry) circle_line_segment_intersection() (in module molass_legacy.KekLib.CircleGeometry) circle_xy() (in module molass_legacy.Wave.Circle) Circles (class in molass_legacy.KekLib.OurManim) cla() (in module molass_legacy.KekLib.DebugPlot) clean_tempfolders() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) clean_up() (SingleInstance method) clean_up_data() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) CleanerThread (class in molass_legacy.KekLib.CleanerThread) cleanup() (SerialExecuter method) cleanup_created_excels() (in module molass_legacy.KekLib.ExcelCOM) cleanup_on_cancel() (Analyzer method) cleanup_queues() (in module molass_legacy.KekLib.ProgressInfo) clear() (DraggableCurves method) (EntryFrame method) (ScatteringCurvePlotter method) (Table method) clear_all() (Table method) clear_cache() (Table method) clear_cd_info_dependents() (JudgeHolder method) clear_current_data() (in module molass_legacy.DataStructure.InputDataUtils) clear_dirs_with_retry() (in module molass_legacy.KekLib.BasicUtils) clear_entries() (EntryFrame method) clear_figures() (OutlineFigure method) clear_pframe() (PeakEditor method) clear_poly_any() (Canvas3D method) clear_preferences() (in module molass_legacy.Synthesizer.Preferences) clear_rows() (TkMiniTable method) clear_scattering_curves() (RangeInspectorDialog method) clear_selection() (PilatusImageInfoTable method) clear_settings() (DeveloperOptionsDialog method) (in module molass_legacy.AutorgKek.Settings) (in module molass_legacy.Synthesizer.SynthesizerSettings) (TesterDialog method) clear_sizes() (Table method) clear_state() (SerialExecuter method) clear_tags() (Table method) clear_window() (QmmWindowSetting method) clf() (in module molass_legacy.KekLib.DebugPlot) click() (GroupingMatrix method) clone() (Camera method) close() (Animation method) (DelayAdjuster method) (EdViewer method) (ExcelManager method) (GuinierDiffViewer method) (GuinierProofPlot method) (in module molass_legacy.KekLib.DebugPlot) (InputManager method) (JobStateCanvas method) (NpSharedMemory method) (OutlineViewer2dFrame method) (OutlineViewer3dFrame method) (OutlineViewerFrame method) (PreprocessDialog method) (RgCurveComputerDialog method) (SaxsSimulator method) (SharedMemory method), [1] (SimpleTutorial method) (UnfoldingTutorial method) close_dev_log() (in module molass_legacy.Test.TesterLogger) close_explorer() (in module molass_legacy.KekLib.TestUtils) close_fig() (CanvasFrame method) (ElutionMapperAdjuster method) (ElutionMapperPlotter method) close_figs() (DecompDummyFrame method) (SuperEditorFrame method) close_shared_memory() (in module molass_legacy.Optimizer.NpSharedMemory) ClosingBrace (class in molass_legacy.KekLib.BraceWidgets) cluster_labels (GMM attribute) cluster_number_selection_by_kl() (in module molass_legacy.Rgg.VariationalMixture) CmapAlbulaLikeDynamic (class in molass_legacy.KekLib.OurColorMaps) coarse_then_fine_alignment() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) CoInitialize() (in module molass_legacy.KekLib.ExcelCOM) ColAddr() (in module molass_legacy.KekLib.ExcelCOM) collect_dependecy_data() (in module molass_legacy.DENSS.DmaxDependency) collect_ratio_data() (in module molass_legacy.UV.WYF_RatiosSurvey) collect_sec_params() (in module molass_legacy.SecTheory.SecParamsSurvey) Collection (class in molass_legacy.KekLib.OurManim) ColorBar (class in molass_legacy.KekLib.OurMatplotlib) column() (TkMiniTable method) column_impl() (TkMiniTable method) column_name_tracer() (ColumnTypeSelector method) ColumnInterp (class in molass_legacy.Optimizer.ColumnInterp) (class in molass_legacy.Optimizer.ColumnInterpGPU) ColumnType (class in molass_legacy.Experiment.ColumnTypes) ColumnTypeEstimator (class in molass_legacy.Experiment.ColumnTypeEstimator) ColumnTypeSelector (class in molass_legacy.GuiParts.ColumnTypeSelector) comb_spline() (in module molass_legacy.GuinierTools.Alsaker2017) command (Dialog attribute) (Message attribute) command() (SaferSpinbox method) CommandMain (class in molass_legacy.AutorgKek.CommandMain) common (UserHandle attribute) compact_path_name() (in module molass_legacy.SerialAnalyzer.DataUtils) compare_bridge_impl() (in module molass_legacy.Alsaker.Compare) compare_gdev_measures_impl() (in module molass_legacy.GuinierTools.CompareGdevMeasures) compare_models() (in module molass_legacy.Models.RateTheoryDemo) compare_primary_peak_mapping_params() (PeakMapper method) compare_rg_stdev() (in module molass_legacy.SerialAnalyzer.StageGuinier) compare_simple_curve() (in module molass_legacy.SecTheory.MonoporeSecSimulation) compare_stochastic_dispersive() (in module molass_legacy.SecTheory.MonoporeSecSimulation) compare_tester_rg() (in module molass_legacy.Test.Tester) compare_to_pdb_impl() (in module molass_legacy.Theory.PdbCrysolRoute) ComplementaryView (class in molass_legacy.Optimizer.ComplementaryView) complex_quadrature() (in module molass_legacy.KekLib.IntegrateUtils) complex_quadrature_vec() (in module molass_legacy.KekLib.IntegrateUtils) component (class in molass_legacy.LRF.regals) components_plot_debug_impl() (in module molass_legacy.Estimators.SdmEstimatorDebug) CompositeInfo (class in molass_legacy.Optimizer.CompositeInfo) compute() (FftInvImpl method) (Foldedness method) (FrobeniusNorm method) (RangeRgComputer method), [1] (Regularization method) compute_4moments() (in module molass_legacy.Models.ElutionModelUtils) compute_AB() (in module molass_legacy.Peaks.EghSupples) compute_adjacent_deviation_ratios() (GuinierKratkyInfo method) compute_all() (in module molass_legacy.Rgg.UvAdjuster) compute_almerge_results() (Demo method) compute_almerge_scattering() (RangeInspectorDialog method) compute_anomaly_indeces() (Guinier method) compute_approx_boundary() (in module molass_legacy.Simulative.ApproxBoundary) compute_approximate_std_diff() (ElutionMapper method) compute_area() (ElutionMapper method) compute_area_proportions() (in module molass_legacy.Decomposer.OptRecsUtils) compute_area_props() (in module molass_legacy.Models.ModelUtils) compute_atsas_fit_consistency() (in module molass_legacy.AutorgKek.Quality) compute_average_curve() (ScatteringBasesurface method) compute_axis_max_value() (in module molass_legacy.KekLib.ExcelCOM) compute_backward_r_value() (SimpleGuinier method) compute_base_curve() (Absorbance method) compute_base_percentile_offset() (ElutionBaseCurve method) compute_base_plane() (in module molass_legacy.Baseline.LambertBeer) compute_base_surface() (in module molass_legacy.DataStructure.LPM) compute_baseline() (in module molass_legacy.Baseline.Baseline) (in module molass_legacy.Baseline.Convex) compute_baseline_and_corrrect() (ScatteringBaseCorrector method) compute_baseline_impl() (in module molass_legacy.Baseline.UvBaseSpline) compute_baseline_using_LPM_impl() (in module molass_legacy.SerialAnalyzer.ScatteringBaseCorrector) compute_baselines() (in module molass_legacy.SerialAnalyzer.ScatteringViewUtils) (Scattering3dSimpleFrame method) compute_basesurface() (in module molass_legacy.Baseline.LambertBeerProof) compute_basic_range() (IntensityData method) compute_bicomponent_info() (Guinier method) compute_bounadry_ratio() (in module molass_legacy.Simulative.ApproxBoundary) compute_bounce_vector() (SolidGrain method) compute_boundary_impl() (in module molass_legacy.Simulative.ApproxBoundary) compute_boundary_walls() (in module molass_legacy.Stochastic.StationaryMove) compute_bounded_bq() (StructureFactorBounds method) compute_bq_score() (in module molass_legacy.Theory.SphericalFit) compute_bq_scores_for_all_peaks() (in module molass_legacy.Theory.Survey) compute_C() (in module molass_legacy.Microfluidics.ThreeStateDimerSolver) (in module molass_legacy.Microfluidics.ThreeStateMonomerSolver) (RgComputer method) compute_C_error() (MatrixFactorization method) compute_C_matrix() (CompositeInfo method) compute_C_monot_penalty() (MatrixFactorization method) compute_cf() (CfSpace method) compute_chi_square() (in module molass_legacy.Mapping.CurveSimilarity) compute_cmap_param() (CmapAlbulaLikeDynamic method) compute_comformance() (BasicOptimizer method) (EdmParams method) (EghParamsBase method) (SdmParams method) compute_components() (ThreeStateDimerSolver method) (ThreeStateMonomerSolver method) (TwoStateSolver method) compute_conc_factor() (ConcFactorsEntry method) compute_conc_factor_util() (in module molass_legacy.SerialAnalyzer.AnalyzerUtil) compute_concentration() (in module molass_legacy.SerialAnalyzer.BaseSurfaceSpline) compute_confpoints_impl() (in module molass_legacy.SecTheory.MonoporeExclCurve) (in module molass_legacy.SecTheory.OligoporeExclCurve) (in module molass_legacy.SecTheory.TriporeExclCurve) compute_conjugate_solutin() (in module molass_legacy.Theory.Conjugate) compute_constant_k() (in module molass_legacy.Microfluidics.ThreeStateDimerSolver) compute_constant_k1() (in module molass_legacy.Microfluidics.ThreeStateMonomerSolver) compute_constant_k2() (in module molass_legacy.Microfluidics.ThreeStateMonomerSolver) compute_corrected_cy() (EoiiCorrector method) compute_corrected_cy_impl() (in module molass_legacy.LRF.EoiiCorrector) compute_corrected_error() (in module molass_legacy.BoundedLRF.ErrorCorrection) compute_corrected_info() (GuinierRegionInspector method) compute_corrected_Rg() (in module molass_legacy.Theory.Rg) compute_corrected_Rg_impl() (in module molass_legacy.Theory.Rg) compute_cratios() (PilatusImage method) compute_cumsum() (PeakRegion method) compute_cumsum_from_uv() (PeakRegion method) compute_cumsum_impl() (PeakRegion method) compute_curve_for_eval_diff() (ElutionMapper method) compute_cy_list() (in module molass_legacy.Models.ModelUtils) (in module molass_legacy.Selective.PropOptimizerEDM) (in module molass_legacy.Selective.PropOptimizerEGH) (in module molass_legacy.Selective.PropOptimizerEMG) (in module molass_legacy.Selective.PropOptimizerSTC) (in module molass_legacy.V2PropOptimizer.PropOptimizerEGH) (PropOptimizer method), [1] compute_denoised_data() (in module molass_legacy.Decomposer.ErrorAnalysis) compute_denoised_error() (ErrorAnalyzer method) compute_deriv_C_error() (MatrixFactorization method) compute_deriv_C_monot_penalty() (MatrixFactorization method) compute_deriv_P_error() (MatrixFactorization method) compute_deviation() (ExclusionCurvepy method) (GuinierDeviation method) compute_deviation_scales() (ElutionMapper method) compute_diff_atsas() (ZeroExtrapolationResultBook method) compute_distinct_cd() (in module molass_legacy.Conc.ConcDepend) compute_divided_belts() (BaseSurfaceSpike method) compute_draw_params() (SecSimulator method) compute_egh_params() (in module molass_legacy.Peaks.ElutionModels) compute_element_score() (UnifiedDecompResult method) compute_elution_curve() (in module molass_legacy.HdcTheory.ElutionCurve) compute_elution_data() (MethodFile method) compute_end_consistency() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) compute_end_points() (in module molass_legacy.GuinierTools.CpdDecompUtils) compute_error() (ExtrapolationSolver method) (SimpleUnfolding method) (SmoothFactorizer method) compute_error_grad() (ExtrapolationSolver method) (SmoothFactorizer method) compute_excurve_impl() (in module molass_legacy.SecTheory.MonoporeExclCurve) (in module molass_legacy.SecTheory.OligoporeExclCurve) (in module molass_legacy.SecTheory.TriporeExclCurve) compute_expected_length() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) compute_expected_size() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) compute_extrapolated_curve() (GuinierLimit method) compute_fit_recs() (ElutionDecomposer method) Compute_Forces() (in module molass_legacy.MD.LjDemo) (in module molass_legacy.MD.NzDemo) compute_fv() (BasicOptimizer method)

compute_fv_adjustment() (in module molass_legacy.Optimizer.FvScoreConverter) compute_fwd_consistency() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) compute_G2() (BiComponentSolver method) compute_global_fitting() (DecompEditorFrame method) compute_gradient() (FrobeniusNorm method) (Regularization method) compute_gradient_impl() (in module molass_legacy.Optimizer.EghGradient) compute_guinier_stop() (GuinierStartSelector method) compute_head_data_trend() (Guinier method) compute_info_with_changed_trimming() (GradualRegionAnalysis method) compute_init_guess() (EdmParams method) (EghParamsBase method) compute_init_params() (FullBatch method) compute_init_rgs() (in module molass_legacy.RgProcess.RgCurve) compute_initial_params() (ElutionMapper method) compute_initial_values() (DriftLinearModel method) compute_inpore_nextpos() (SolidGrain method) compute_integral_basecurve() (Absorbance method) compute_jsd() (DecompEditorFrame method) compute_judge_info() (ConcDepend method) (SRR method) compute_known_error() (ExtrapolationSolver method) compute_known_error_grad() (ExtrapolationSolver method) compute_known_error_grad_impl() (in module molass_legacy.Extrapolation.KnownPeakPenalty) (in module molass_legacy.Extrapolation.KnownPeakPenaltyNumba) compute_known_error_impl() (in module molass_legacy.Extrapolation.KnownPeakPenalty) (in module molass_legacy.Extrapolation.KnownPeakPenaltyNumba) compute_lines() (ScatteringBasesurface method) compute_lnp_curves() (in module molass_legacy.Simulative.ApproxBoundary) compute_lpm_baselines() (BaseSurface method) compute_lrf_info() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierDemo) compute_LRF_matrices() (BasicOptimizer method) compute_mapped_curve_simimarity() (PeakMapper method) compute_mapping_params() (in module molass_legacy.Microfluidics.MicrofluidicMapping) compute_mapping_penalty() (in module molass_legacy.Optimizer.PenaltyUtils) compute_mass_ratios() (in module molass_legacy.Protein.WypMassRatios) compute_matching_indeces() (in module molass_legacy.Trimming.MatchingPeaks) compute_min_dist() (in module molass_legacy.Factors.PyChemLib3D) compute_min_norm() (in module molass_legacy.Microfluidics.MinimumSurface) compute_min_norm_bq_s_aq() (in module molass_legacy.Conc.ConcDepend) compute_min_norm_scaled() (in module molass_legacy.Conc.ConcDepend) compute_min_norm_scaled_wide() (in module molass_legacy.Conc.ConcDepend) compute_mnp_curves() (in module molass_legacy.Simulative.ApproxBoundary) compute_momemts_from_params() (in module molass_legacy.SecTheory.HermansEmg) compute_moments() (ElCurve method) (ElutionCurve method) (in module molass_legacy.Peaks.ElutionModels) (in module molass_legacy.Peaks.MomentsUtils) compute_moments_from_egh_params() (in module molass_legacy.Peaks.ElutionModels) compute_moments_from_ksec_p_r() (in module molass_legacy.SecTheory.HermansEmg) compute_moments_list() (BasicOptimizer method) compute_monopore_curves() (in module molass_legacy.SSDC.MappingDecomposer) compute_monotonicity() (in module molass_legacy.GuinierAnalyzer.SimpleGuinier) compute_mu_sigma() (in module molass_legacy.SecTheory.MonoPore) compute_mw() (MwRgInfo method) compute_mw_integrity() (BasicOptimizer method) compute_mw_integrity_impl() (in module molass_legacy.Optimizer.MwIntegrity) compute_noise_and_size_sigma_dependency() (in module molass_legacy.SerialAnalyzer.BasePercentileOffset) compute_noisiness() (BestPercentile method) (ElutionBaseCurve method) (ScatteringBaseCorrector method) compute_norm_1d() (in module molass_legacy.Extrapolation.ConjugateGradientThreeD) compute_norm_2d() (in module molass_legacy.Extrapolation.ConjugateGradientThreeD) compute_normalized_resid() (UnifiedDecompResult method) compute_nrmsd() (in module molass_legacy.Extrapolation.ExtrapolationProof) compute_nSRD_info() (RangeInspectorDialog method) compute_num_guinier_steps() (SerialExecuter method) compute_optimal_curves() (OptimalSmoothing method) compute_optimal_proportion() (in module molass_legacy.Selective.PropOptimizer) (in module molass_legacy.Selective.PropOptimizerEDM) (in module molass_legacy.Selective.PropOptimizerEGH) (in module molass_legacy.Selective.PropOptimizerEMG) (in module molass_legacy.Selective.PropOptimizerSTC) (in module molass_legacy.V2PropOptimizer.PropOptimizerEGH) (in module molass_legacy.V2PropOptimizer.PropOptimizerSTC) (in module molass_legacy.V2PropOptimizer.PropOptimizerUtils) compute_optimal_proportion_impl() (in module molass_legacy.Selective.PropOptimizer) (in module molass_legacy.V2PropOptimizer.PropOptimizerUtils) compute_optimized_weights() (in module molass_legacy.Optimizer.FvSynthesisOptimizer) compute_P_error() (MatrixFactorization method) compute_params_from_momemts() (in module molass_legacy.SecTheory.HermansEmg) compute_peak_deviation() (BasicOptimizer method) compute_peak_params() (in module molass_legacy.Selective.VariedPropAnalysis) compute_peak_top_scattering() (RangeInspectorDialog method) compute_peak_width() (ElutionBaseCurve method) compute_peak_width_impl() (ElutionBaseCurve method) compute_penalty() (StructureFactorBounds method) compute_penalty_vector() (ElutionMapper method) compute_Pf() (SimpleUnfolding method) (UnfoldingModel method) compute_plane() (in module molass_legacy.KekLib.ThreeDimUtils) compute_poreentries() (NewGrain method) (SolidGrain method) compute_positive_ratio() (AdapterQualiy method) (IntensityData method) compute_projected_xy() (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) compute_propagated_errors() (ExtrapolationSolver method) compute_propagated_errors_from_denoised_error() (ExtrapolationSolver method) compute_props() (in module molass_legacy.Selective.PropOptimizerEDM) (in module molass_legacy.Selective.PropOptimizerEGH) (in module molass_legacy.Selective.PropOptimizerEMG) (in module molass_legacy.Selective.PropOptimizerSTC) (in module molass_legacy.V2PropOptimizer.PropOptimizerEGH) (PropOptimizer method), [1] compute_range_rgs() (in module molass_legacy.Selective.PropOptimizerImpl) (in module molass_legacy.V2PropOptimizer.PropOptimizer) compute_ratios_from_Puv() (in module molass_legacy.UV.WYF_Ratios) compute_raw_moment1() (in module molass_legacy.Models.ModelUtils) compute_raw_moments1() (in module molass_legacy.Models.ModelUtils) compute_rdf() (in module molass_legacy.Theory.OrnsteinZernike) compute_rdf_prism() (in module molass_legacy.Theory.OrnsteinZernike) compute_rdf_pyoz() (in module molass_legacy.Theory.OrnsteinZernike) compute_rdr_hints() (JudgeHolder method) compute_rdr_legacy() (ConcDepend method) compute_reciprocally_weighted_matrices() (in module molass_legacy.Extrapolation.WeightedLRF) compute_reflected_point() (in module molass_legacy.Stochastic.StationaryMove) compute_residual_curve() (ElutionDecomposer method) compute_residual_error() (ElutionDecomposer method) compute_retention_time() (in module molass_legacy.SecTheory.RetensionTime) compute_retention_time_from_N() (in module molass_legacy.SecTheory.NumPlates) compute_rg() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) (in module molass_legacy.SecTheory.MonoPore) compute_Rg() (in module molass_legacy.SecTheory.ShapeRgFigure) (in module molass_legacy.Theory.Rg) compute_rg() (MwRgInfo method) (OutlineFigure method) (PreliminaryRg method) compute_rg_curves() (in module molass_legacy.GuinierTools.RgCurveUtils) compute_rg_discreteness() (in module molass_legacy.Optimizer.RgDiscreteness) compute_rg_from_qvDEP() (in module molass_legacy.LRF.LrfRgUtils) compute_rg_from_retention_time() (in module molass_legacy.SecTheory.RetensionTime) compute_rg_info() (RangeInspectorDialog method) compute_rg_list() (RgComputer method) compute_rg_params() (OptLrfInfo method) compute_rg_params_impl() (in module molass_legacy.Optimizer.GuinierRg) compute_rg_quartets() (RgDiffRatios method) compute_rg_segment() (in module molass_legacy.RgProcess.RgCurve) compute_rg_segment_proxy() (in module molass_legacy.RgProcess.RgCurve) compute_rg_segment_wrapper() (in module molass_legacy.RgProcess.RgCurve) compute_rgcurve_deviation() (GuinierDeviation method) compute_rgr_legacy_impl() (in module molass_legacy.QuickAnalysis.RgDiffRatios) compute_rgs() (in module molass_legacy.GuinierTools.RgComputer) (LrfSource method) (PeakRegionLrf method) compute_rgs_from_lrf_source() (in module molass_legacy.Selective.LrfRgComputer) compute_rotated_hyperbola_y() (in module molass_legacy.Peaks.Hyperbola) compute_rough_mapping_score() (CurveSimilarity method) compute_scatter() (in module molass_legacy.UV.Absorbance) compute_scatter_factor_at() (Absorbance method) compute_scattering_baseline_discomfort() (SerialData method) compute_sci() (SingleComponent method) compute_sci_ratio() (SingleComponent method) compute_score_text() (SimpleGuinierScoreDialog method) compute_scores() (CdInspectionDailog method) (FvScoreInspecor method) compute_sdm_init_params() (SdmEstimator method) compute_sec_peak_params() (in module molass_legacy.SecTheory.SecParamsPlot) compute_sedimentation_rate() (ElCurve method) (ElutionCurve method) compute_sigma() (in module molass_legacy.SecTheory.FoleyDorseyEmg) (in module molass_legacy.SecTheory.LanJorgensonEgh) compute_similarity_at() (CurveSimilarity method) compute_similarity_impl() (CurveSimilarity method) compute_similarlity_factors() (in module molass_legacy.Mapping.CurveSimilarity) compute_simple_params() (ElutionMapper method) compute_size_sigma() (ElutionBaseCurve method) compute_slope_param_fg() (ScatteringBasesurface method) compute_soomth_surface() (BaseSurfaceSpike method) compute_sq() (in module molass_legacy.Theory.OrnsteinZernike) compute_standard_wCD() (in module molass_legacy.SecTheory.SecPDF) compute_std_diff() (ElutionMapper method) compute_stochastic_init_params() (StcEstimator method) compute_surface() (TwoParamAnalysis method) compute_synthetic_score() (UnifiedDecompResult method) compute_tau() (in module molass_legacy.SecTheory.FoleyDorseyEmg) (in module molass_legacy.SecTheory.LanJorgensonEgh) compute_tau_simple() (in module molass_legacy.SecTheory.FoleyDorseyEmg) compute_tr() (ExclusionCurvepy method) compute_tr_impl() (in module molass_legacy.SecTheory.ExclusionCurveSpike) compute_trend() (WLS_HeadTrend method) compute_valley_bottom_score() (ElutionCurve method) compute_verts() (Canvas3D method) compute_weight_info() (OptDataSets method) compute_weights() (in module molass_legacy.SecTheory.ShapeRgFigure) compute_whole_similarity() (CurveSimilarity method) compute_xr_peak_position() (EghParamsBase method) compute_xray_baseline() (ElutionMapper method) compute_y() (BidirectFft method) compute_y_for_opt() (DualPairSelector method) compute_yf() (SimpleUnfolding method) (TwoStateCurves method) (UnfoldingModel method) compute_yi() (ThreeStateCurves method), [1] compute_yn() (ThreeStateCurves method), [1] compute_yu() (SimpleUnfolding method) (ThreeStateCurves method), [1] (TwoStateCurves method) (UnfoldingModel method) compute_z() (BidirectFft method) compute_zernike_coefficients() (SaxsDetector method) compute_zs() (Canvas3D method) comupute_bico_mono_ratio() (Guinier method) conc_pick() (in module molass_legacy.Theory.SphericalFit) concatinate_data() (in module molass_legacy.LRF.SimultaneousLRF) ConcDepend (class in molass_legacy.Conc.ConcDepend) concentration_class (class in molass_legacy.LRF.regals) concentration_problem() (mixture method) concentration_simple (class in molass_legacy.LRF.regals) concentration_smooth (class in molass_legacy.LRF.regals) concentrations (mixture property) ConcentrationSmootherAveraging (class in molass_legacy.SerialAnalyzer.InputSmootherAveraging) ConcFactorsEntry (class in molass_legacy.GuiParts.ConcFactorsEntry) ConcMatrix (class in molass_legacy.LRF.ConcMatrix) ConcNormalizerDialog (class in molass_legacy.Microfluidics.ConcNormalizerDialog) ConcOptsDialog (class in molass_legacy.Extrapolation.ConcOptsDialog) config() (ColumnTypeSelector method) (ConcFactorsEntry method) (CopyableLabel method) (FileNodeEntry method) (FromToSpinBoxPair method) (PropOptMenu method) (QmmDenssMenu method) (QmmMenu method) (RankViewMenu method) (SaferSpinbox method) (SizableEntry method) (SizableLabel method) (SlimButton method) (V2Menu method) config_states() (PreviewButtonFrame method) config_states_alternative() (PreviewButtonFrame method) configure() (SlimButton method) conform() (SecSimulator method) ConformanceDemo (class in molass_legacy.SecTheory.ConformanceDemo) ConnectedIntervals (class in molass_legacy.SerialAnalyzer.ConnectedIntervals) Console (class in molass_legacy.KekLib.Console) constraints_forget() (SpecPanel method) constraints_restore() (SpecPanel method) construct_bounds() (in module molass_legacy.Theory.BoundedLRF) construct_egh_params_type() (in module molass_legacy.ModelParams.EghParams) construct_optimizer() (FullBatch method) construct_params_type_from_code() (in module molass_legacy.ModelParams.ParamSetUtils) contrast_sigma_info() (in module molass_legacy.SecTheory.NumPlates) control_c() (ResultGui method) control_extrapolation() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) control_gui_automatically() (ElutionMapperCanvas method) control_suite() (SimpleGuinierTester method) ControlPanel (class in molass_legacy.Extrapolation.ExtrapolationControlPanel) convert() (EghAdjuster method) (StcAdjuster method) convert_for_display() (in module molass_legacy.Optimizer.CompositeInfo) convert_score() (in module molass_legacy.Optimizer.FvScoreConverter) convert_score_list() (in module molass_legacy.Optimizer.TheDebugUtils) convert_to_colors() (in module molass_legacy.QuickAnalysis.JudgeHolder) convert_to_degrees() (in module molass_legacy.QuickAnalysis.JudgeHolder) convert_to_fixed_font_latex() (in module molass_legacy.KekLib.OurMatplotlib) convert_to_milder_qualities() (in module molass_legacy.GuinierTools.RgCurveUtils) convert_to_paired_ranges() (in module molass_legacy.DataStructure.AnalysisRangeInfo) convert_to_peak_significances() (in module molass_legacy.Optimizer.TheUtils) convert_to_pixels() (TtkScale method) convert_to_probabilitic_data() (in module molass_legacy.Rgg.RggUtils) convert_to_stochastic_decomposition() (in module molass_legacy.Selective.StochasticAdapter) convert_to_the_least_shape() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) convert_to_the_level() (in module molass_legacy.KekLib.PlotUtils) convert_to_v1_model_ranges() (in module molass_legacy.V2PropOptimizer.V1RangeCoverter) convert_to_xr_params() (in module molass_legacy.SecTheory.PlateNumberEgh) convert_to_xr_params_fd() (in module molass_legacy.SecTheory.FoleyDorseyEmg) convert_to_xr_params_hermans() (in module molass_legacy.SecTheory.HermansEmg) convert_to_xr_params_lj() (in module molass_legacy.SecTheory.LanJorgensonEgh) Convolution (class in molass_legacy.Decomposer.ConvolutionDemo) CoordinateFormatter (class in molass_legacy.KekLib.OurMatplotlib) copy() (AlMergeSolver method) (AnimMapper method) (DataSet method) (IntensityData method) copy_create_dataset_from_sd() (in module molass_legacy.SecSaxs.DataSet) copy_for_mct() (XrayData method) copy_proportions() (VariedPropAnalysis method) CopyableLabel (class in molass_legacy.KekLib.ReadOnlyText) copycreate_optimizer() (in module molass_legacy.Optimizer.SimpleDebugUtils) correct_a_single_q_plane() (ScatteringBaseCorrector method) correct_all_q_planes() (ScatteringBaseCorrector method) correct_flat_negative_baseline() (in module molass_legacy.Irregular.Preprocess) correct_inconsistent_extensions() (AutoRestrictor method) correct_largely_negative_values() (in module molass_legacy.Trimming.OptViewRange) correct_params_list() (EoiiCorrector method) correct_valley_bottm() (ProxyCurve method) correct_with_matrix_base() (ScatteringBaseCorrector method) CorrectedBaseline (class in molass_legacy.Decomposer.DecompUtils) correction_curve() (UvCorrector method) (UvCorrectorEgh method) (UvCorrectorSpline method) CoUninitialize() (in module molass_legacy.KekLib.ExcelCOM) count() (range method) (str method) Counter (class in molass_legacy.Synthesizer.PilatusCounter) cov_params() (ODR_WLS_Result method) (Result method), [1] (SAngler_WLS_Result method) cpt_var() (in module molass_legacy.GuinierTools.Alsaker2017) create_animator() (SpikeDialog method), [1], [2] create_axes() (CdInspectionDailog method) (SecSimulator method) create_bg() (in module molass_legacy.Baseline.BaselineGuinier) create_canvas() (MappingZoomCanvas method) (SpikeDialog method), [1], [2] create_concetration_chart() (ZeroExtrapolationResultBook method) create_corrected_data() (ScatteringPlot method) create_corrected_sd() (in module molass_legacy.Batch.LiteBatch) create_cursor() (DraggableCurves method) create_extrapolated_intensity_chart() (ZeroExtrapolationResultBook method) create_extrapolation_params_chart() (ZeroExtrapolationResultBook method) create_extrapolation_params_chart_() (in module molass_legacy.Reports.ZeroExtrapolationResultBook) create_figure() (DenssFitDataDialog method) (DenssGuiDialog method) create_flow_change_proxy() (MicrofluidicElution method) create_gamma_matrix() (in module molass_legacy.GuinierTools.Alsaker2017) create_gradual_analysis() (DataRestrictor2dFrame method) create_iterator() (in module molass_legacy.Optimizer.ParamsIterator) create_Iz_conc_chart() (ZeroExtrapolationResultBook method) create_line_variables() (RangeInspectorDialog method) create_log_queue() (in module molass_legacy.Test.TesterLogger) create_lowq() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) (Sasrec method), [1] create_lrf_info_for_debug() (BasicOptimizer method) create_mapper() (in module molass_legacy.Mapping.MapperConstructor) (MeasuredData method) create_mapper_for_drift_analysis() (in module molass_legacy.SerialAnalyzer.DriftAnalyzer) create_mass_ratios_file() (in module molass_legacy.Protein.WypMassRatios) create_menu() (MenuButton method) create_new_frame() (DecompEditorDialog method) create_optimizer_for_debug() (in module molass_legacy.Optimizer.FunctionDebuggerUtils) create_our_logger() (in module molass_legacy.KekLib.NoseUtils) (in module molass_legacy.SerialAnalyzer.SerialTestUtils) create_params_chart() (ZeroExtrapolationResultBook method) create_plot_specs() (in module molass_legacy.Extrapolation.ExtrapolationProof) create_popup_menu() (AdvancedFrame method) (ComplementaryView method) (DataRestrictor2dFrame method) (DecompEditorFrame method) (ElutionMapperPlotter method) (FileInfoTable method) (OutlineFigure method) (PeakEditor method) (PreSyncViewer method) (ResultGui method) (SaxsSimulator method) (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ScatteringPlot method) (SecInspection method) (ThreeDimViewer method) (VariedPropAnalysis method), [1] create_popup_menu_0() (JobStateCanvas method) create_popup_menu_1() (JobStateCanvas method) create_popup_menu_devel() (JobStateCanvas method) create_popup_menu_prog() (JobStateCanvas method) create_pr_function_chart() (DatgnomResultBook method) create_QualityChart() (GuinierAnalysisResultBook method) create_range_variables() (RangeInspectorDialog method) create_Rg_chart() (ZeroExtrapolationResultBook method) create_scattering_curve_chart() (DatgnomResultBook method) create_segments_multi_process() (RgCurve method) create_segments_single_process() (RgCurve method) create_shm_singleton() (in module molass_legacy.Optimizer.NpSharedMemory) create_sim_data() (DriftSimulation method) create_spline() (in module molass_legacy.SecTheory.MonoporeExclCurve) (in module molass_legacy.SecTheory.OligoporeExclCurve) (in module molass_legacy.SecTheory.TriporeExclCurve) create_table() (ElutionModelEditor method) (FileInfoTable method) create_thread() (ExcelComClient method) create_vertices() (in module molass_legacy.Prob.ConvolutionByDice) create_xr_baseline_object() (in module molass_legacy.Baseline.BaselineUtils) create_xyz() (SimpleGuinierAnalyzer method) CreateFolderDialog (class in molass_legacy.Synthesizer.CreateFolderDialog) crop_saxs_files() (in module molass_legacy.ATSAS.CorMapAnalysis) CrysolExecutor (class in molass_legacy.ATSAS.Crysol) CrysolResultsEntry (class in molass_legacy.Theory.PdbCrysolRoute) Ct() (in module molass_legacy.Theory.PbMoore1980) (Sasrec method), [1] Ct2() (Sasrec method), [1] cuda_ok() (GpuInfo method) cumsum_inverse() (in module molass_legacy.SecTheory.CumsumInverse) cunstom_button_box() (ScatteringPlot method) cunstom_button_box_add() (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ScatteringPlot method) cupy_ok() (GpuInfo method) curr_folder_tracer() (FullOptDialog method) current (UserHandle attribute) curselection() (Table method) curvalue() (Table method) curvature_curve() (in module molass_legacy.KekLib.OurCurvature) CurveFeatures (class in molass_legacy.SerialAnalyzer.CurveFeatures) CurveSaverDialog (class in molass_legacy.SerialAnalyzer.CurveSaverDialog) CurveSimilarity (class in molass_legacy.Mapping.CurveSimilarity) CurveSimilarityProxy (class in molass_legacy.Microfluidics.MicrofluidicElution) custom_sigmoid() (in module molass_legacy.Trimming.CustomSigmoid) custom_sigmoid_inv() (in module molass_legacy.Trimming.CustomSigmoid) CustomInfo (class in molass_legacy.MultiProc.Manager) CustomMessageBox_ (class in molass_legacy.KekLib.CustomMessageBox) CustomNavigationToolbar (class in molass_legacy.SerialAnalyzer.CustomNavigationToolbar) cut_upper_folders() (in module molass_legacy.SerialAnalyzer.DataUtils)

D

d_egh() (in module molass_legacy.Peaks.EghSupples) darkorange (in module molass_legacy.KekLib.HtmlColorNames) data (Absorbance attribute) (Image property) Data1 (GUID attribute) Data2 (GUID attribute) Data3 (GUID attribute) Data4 (GUID attribute) data_dump() (in module molass_legacy.Models.ModelUtils) DataBridge (class in molass_legacy.Batch.DataBridge) DataCursor (class in molass_legacy.KekLib.OurMatplotlib) DataDebugger (class in molass_legacy.DataStructure.DataDebugger) DataFilter (class in molass_legacy.QuickAnalysis.PeakUtils) (class in molass_legacy.Selective.DataFilter) DataLoader (class in molass_legacy.LoaderProcess.DataLoader) datarange_problem_inspection() (in module molass_legacy.Test.TempInspection) DataRangeDialog (class in molass_legacy.Trimming.DataRange) DataRestrictor2dFrame (class in molass_legacy.Trimming.DataRange) DataRestrictorFrame (class in molass_legacy.Trimming.DataRange) DataSet (class in molass_legacy.SecSaxs.DataSet) DatasetFilter (class in molass_legacy.Test.DatasetFilter) DataTreatment (class in molass_legacy.SecSaxs.DataTreatment) datgnom_read_data() (in module molass_legacy.ATSAS.DatGnom) DatgnomExecutor (class in molass_legacy.ATSAS.DatGnom) DatgnomResultArgs (class in molass_legacy.Reports.DatgnomExcelFormatter) DatgnomResultBook (class in molass_legacy.Reports.DatgnomResultBook) DDList (class in molass_legacy.KekLib.DDList) DEBUG (in module molass_legacy.AutorgKek.KekToolsGP) debug() (Logger method) debug_elution_plot() (in module molass_legacy.Decomposer.DecompUtils) debug_impl() (in module molass_legacy.OnTheFly.DebugImpl) (in module molass_legacy.Tools.DebugCushion) debug_impl_ConcDepend() (in module molass_legacy.OnTheFly.DebugImpl) debug_impl_SummaryBook() (in module molass_legacy.OnTheFly.DebugImpl) debug_log_results() (ElutionMapper method) debug_objective_function() (in module molass_legacy.Tools.EmbedCushion) debug_optimizer() (in module molass_legacy.Optimizer.SimpleDebugUtils) debug_plot() (AutorgKek method) (BasePlane method) (DecompEditorFrame method) (DualOptimzer method) (ElutionDecomposer method) (FullOptResult method) (in module molass_legacy.DataStructure.LPM) (in module molass_legacy.DataStructure.SvdDenoise) (in module molass_legacy.Mapping.PeakMapper) (in module molass_legacy.SerialAnalyzer.BasePlane) (in module molass_legacy.Theory.SphericalFit) (in module molass_legacy.Trimming.UvCorrectorIllust) (MatrixFactorization method) (RangeEditorFrame method) (ScatteringBasecurve method) (ScatteringBaseline method) (SuperEditorFrame method) (UvBaseSurface method) debug_plot_close() (in module molass_legacy.KekLib.DebugPlot) debug_plot_emg_peaks() (MatchingPeaks method) debug_plot_error() (in module molass_legacy.Decomposer.ErrorAnalysis) debug_plot_fitted() (ElutionDecomposer method) debug_plot_gmm() (in module molass_legacy.Prob.GaussianMixture) debug_plot_impl() (in module molass_legacy.Decomposer.DecompEditorDebug) debug_plot_mapping() (in module molass_legacy.Mapping.MappingUtils) debug_plot_ok() (in module molass_legacy.KekLib.DebugPlot) debug_plot_opt_recs() (in module molass_legacy.Decomposer.OptRecsUtils) debug_plot_opt_recs_impl() (in module molass_legacy.Decomposer.OptRecsUtils) debug_plot_params() (BasicOptimizer method) debug_plot_runner() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) debug_plot_smoothing() (in module molass_legacy.Decomposer.ErrorAnalysis) debug_queue_get() (in module molass_legacy.Synthesizer.DebugQueue) debug_queue_put() (in module molass_legacy.Synthesizer.DebugQueue) debug_sd() (DecompEditorDialog method) (ElutionMapperCanvas method) DebugCanvas (class in molass_legacy.KekLib.DebugCanvas) DebugDialog (class in molass_legacy.OnTheFly.DebugDialog) DebugPlot (class in molass_legacy.KekLib.DebugPlot) DebugPlotter (class in molass_legacy.Baseline.BpaInspect) decide_allowance_color() (in module molass_legacy.Simulative.ApproxBoundary) decide_num_workers() (DenssManager method) (Manager method) decode_ret_info() (TrimmingDebugDnd method) decomp_editor_state() (ElutionMapperCanvas method) decomp_proc_needed() (AnalysisGuideInfo method) DecompDummyDialog (class in molass_legacy.RangeEditors.DecompDummyDialog) DecompDummyFrame (class in molass_legacy.RangeEditors.DecompDummyFrame) DecompEditorDialog (class in molass_legacy.RangeEditors.DecompEditorDialog) DecompEditorFrame (class in molass_legacy.RangeEditors.DecompEditorFrame) DecompEditorInfo (class in molass_legacy.DataStructure.RangeInfo) DecompInfo (class in molass_legacy.Decomposer.DecompInfo) DecompLoghandler (class in molass_legacy.MultiProc.Driver) decompose() (in module molass_legacy.RangeEditors.DecompDummyDialog) (PreDecomposer method) decompose_by_bridge() (in module molass_legacy.Selective.BridgeUtils) decompose_by_proportions() (in module molass_legacy.Elution.Proportional) decompose_by_proportions_impl() (in module molass_legacy.Elution.Proportional) decompose_elution_better() (in module molass_legacy.Decomposer.DecompUtils) decompose_elution_impl() (in module molass_legacy.Decomposer.DecompUtils) decompose_elution_uv_to_xray() (in module molass_legacy.Decomposer.DecompUtils) decompose_elution_xray_to_uv() (in module molass_legacy.Decomposer.DecompUtils) decompose_paired_elution_curves() (in module molass_legacy.SSDC.MappingDecomposer) decompose_separatley() (MappingGmmDecomposer method) decompose_toAB() (ElutionDecomposer method) decopose_by_binary_props() (in module molass_legacy.Elution.Proportional) deformed_jsd() (in module molass_legacy.Distance.JensenShannon) degrade_by_anomalies() (Quality method) DelayAdjuster (class in molass_legacy.Microfluidics.DelayAdjuster) delayed_select() (ElutionCurvePicker2dFrame method) delayed_settings_init() (in module molass_legacy.Optimizer.OptimizerSettings) DelayOptimizer (class in molass_legacy.Microfluidics.DelayOptimizer) delete() (FileNodeEntry method) delete_active() (Table method) delete_cols() (Table method) delete_rows() (Table method) Demo (class in molass_legacy.Rank.Synthesized) demo() (in module molass_legacy.Baseline.BaseEstimater) (in module molass_legacy.Baseline.BaselineUtils) (in module molass_legacy.Baseline.BaseScattering) (in module molass_legacy.Baseline.Convex) (in module molass_legacy.Baseline.LpmInspect) (in module molass_legacy.Baseline.LpmInspect_for_paper) (in module molass_legacy.BoundedLRF.HardSphereDemo) (in module molass_legacy.CFSD.SimpleDecomposeDemo) (in module molass_legacy.DENSS.DmaxEstimation) (in module molass_legacy.Error.ErrorModel) (in module molass_legacy.GuinierAnalyzer.SimpleGuinierDemo) (in module molass_legacy.GuinierTools.Alsaker2017_Test) (in module molass_legacy.HdcTheory.ElutionCurve) (in module molass_legacy.HdcTheory.LaminarFlow) (in module molass_legacy.HdcTheory.SpikeDemo) (in module molass_legacy.ICIS.IcisDemo) (in module molass_legacy.KekLib.DraggableArrow) (in module molass_legacy.KekLib.DraggableCurves) (in module molass_legacy.KekLib.mplclofa) (in module molass_legacy.KekLib.SimulatedAnnealing) (in module molass_legacy.KekLib.SplashScreen) (in module molass_legacy.LRF.LrfSolver) (in module molass_legacy.LRF.RegalsDemo) (in module molass_legacy.LRF.SimultaneousLRF) (in module molass_legacy.Mapping.FewerPointMapper) (in module molass_legacy.MD.LjDemo) (in module molass_legacy.MD.NzDemo) (in module molass_legacy.Models.AffineContinuityDemo) (in module molass_legacy.Models.CfsEvalPeaksDemo) (in module molass_legacy.Models.CharacteristicDemo) (in module molass_legacy.Models.ElutionModelDemo) (in module molass_legacy.Models.HistoryDemo) (in module molass_legacy.Models.ProportionalDemo) (in module molass_legacy.Models.TentativeDemo) (in module molass_legacy.Optimizer.BoundsAnalysis) (in module molass_legacy.Optimizer.StructureFactorBoundsDemo) (in module molass_legacy.Peaks.EghTauLimits) (in module molass_legacy.Peaks.HyperbolaDemo) (in module molass_legacy.Peaks.HyperbolaFit) (in module molass_legacy.Peaks.RobustCurve) (in module molass_legacy.Peaks.RobustPeaks) (in module molass_legacy.Peaks.WindowMapping) (in module molass_legacy.Prob.AnimatedHistogram) (in module molass_legacy.Prob.ConvolutionByDice) (in module molass_legacy.Prob.DiscretePdf) (in module molass_legacy.Protein.UvSensitivity) (in module molass_legacy.Rank.Boundary) (in module molass_legacy.Rank.RankControl) (in module molass_legacy.Rank.SrrStats) (in module molass_legacy.Rank.Synthesized) (in module molass_legacy.SecSaxs.DataTreatment) (in module molass_legacy.SecTheory.ColumnIllust) (in module molass_legacy.SecTheory.ConformanceDemo) (in module molass_legacy.SecTheory.DiporeSecSimulation) (in module molass_legacy.SecTheory.DiporeSimulation) (in module molass_legacy.SecTheory.Dondi1986) (in module molass_legacy.SecTheory.ExclusionCurveSpike) (in module molass_legacy.SecTheory.Felinger2005) (in module molass_legacy.SecTheory.LognormalStudy) (in module molass_legacy.SecTheory.MolassProof) (in module molass_legacy.SecTheory.MonoporeExclCurve) (in module molass_legacy.SecTheory.MonoporeSecSimulation) (in module molass_legacy.SecTheory.MonoporeSimulation) (in module molass_legacy.SecTheory.OligoporeExclCurve) (in module molass_legacy.SecTheory.PeakAsymmetry) (in module molass_legacy.SecTheory.PlateTheory) (in module molass_legacy.SecTheory.SecSimulator) (in module molass_legacy.SecTheory.StochasticModels) (in module molass_legacy.SecTheory.TriporeExclCurve) (in module molass_legacy.SecTheory.TriporeSecSimulation) (in module molass_legacy.SecTheory.TriporeSimulation) (in module molass_legacy.SerialAnalyzer.SimulatedAnnealing) (in module molass_legacy.SimTools.ErrorModel) (in module molass_legacy.Simulative.ApproxBoundaryDemo) (in module molass_legacy.Simulative.SimulativeDemo) (in module molass_legacy.Stochastic.ColumnSimulation) (in module molass_legacy.Theory.Anisotropy) (in module molass_legacy.Theory.BoundedLRF) (in module molass_legacy.Theory.JsPedersen1997) (in module molass_legacy.Theory.OrnsteinZernike) (in module molass_legacy.Theory.PbMoore1980) (in module molass_legacy.Theory.PdbCrysolRoute) (in module molass_legacy.Theory.RdfCheck) (in module molass_legacy.Theory.RoigSolvas2019) (in module molass_legacy.Theory.SfBound) (in module molass_legacy.Theory.SphericalFit) (in module molass_legacy.Theory.SynthesizedLRF) (in module molass_legacy.Theory.TdGrant2022) (in module molass_legacy.Trials.BoundedLRF.IterativeLrfSolverDemo) (in module molass_legacy.Trimming.DiniSigmoid) (in module molass_legacy.UV.FoldednessDemo) (in module molass_legacy.UV.LrfMappingDemo) demo0() (in module molass_legacy.SecTheory.CavazziniProof) demo1() (in module molass_legacy.BoundedLRF.HardSphereDemo) (in module molass_legacy.LRF.UnknownConc) (in module molass_legacy.SecTheory.CavazziniProof) (in module molass_legacy.Theory.DjKinning1984) (in module molass_legacy.Theory.EllipsoidPlot) (in module molass_legacy.Theory.ModelData) (in module molass_legacy.Theory.SolidSphere) (in module molass_legacy.Theory.SpherePlot) (in module molass_legacy.Theory.StructureFactor) (in module molass_legacy.Wave.Beam) (in module molass_legacy.Wave.Circle) (in module molass_legacy.Wave.Scattering1) demo1_() (in module molass_legacy.LRF.UnknownConc) demo2() (in module molass_legacy.SecTheory.PlateTheory) (in module molass_legacy.Theory.JsPedersen1997) (in module molass_legacy.Theory.ModelData) (in module molass_legacy.Theory.RDF) (in module molass_legacy.Theory.SolidSphere) (in module molass_legacy.Trials.BoundedLRF.IterativeLrfSolverDemo) (in module molass_legacy.Wave.Scattering2) demo3() (in module molass_legacy.SecTheory.PlateTheory) (in module molass_legacy.Theory.SolidSphere) (in module molass_legacy.Trials.BoundedLRF.IterativeLrfSolverDemo) demo3d() (in module molass_legacy.Prob.ConvolutionByDice) demo4() (in module molass_legacy.Theory.SolidSphere) demo_() (in module molass_legacy.Prob.AnimatedHistogram) demo_2d() (in module molass_legacy.SecTheory.EdmDemo) demo_3d() (in module molass_legacy.SecTheory.EdmDemo) (in module molass_legacy.Tutorials.LPM) demo_accel() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) demo_cushion() (in module molass_legacy.Simulative.SimulationCushion) demo_dipore_cf() (in module molass_legacy.SymPy.StochasticUtils) demo_for_debugger() (in module molass_legacy.Optimizer.StructureFactorBoundsDemo) demo_func() (in module molass_legacy.SerialAnalyzer.BpoDependencyDemo) demo_impl() (in module molass_legacy.Baseline.LpmInspect) (in module molass_legacy.Baseline.LpmInspect_for_paper) (in module molass_legacy.Error.ErrorModel) (in module molass_legacy.GuinierTools.Alsaker2017_Test) (in module molass_legacy.LRF.UnknownConc) (in module molass_legacy.Simulative.ApproxBoundary) (in module molass_legacy.Trials.BoundedLRF.IterativeLrfSolverDemo) demo_lj() (in module molass_legacy.Factors.PyChemLib3D) demo_lj_force() (in module molass_legacy.Factors.PyChemLib) demo_lj_force2() (in module molass_legacy.Factors.PyChemLib) demo_mdtraj() (in module molass_legacy.Theory.RDF) demo_modeled_peaks() (in module molass_legacy.QuickAnalysis.PeakUtils) demo_modeled_peaks_dialog() (in module molass_legacy.QuickAnalysis.PeakUtils) demo_monopore_cf() (in module molass_legacy.SymPy.StochasticUtils) demo_pathpatch_2d_to_3d() (in module molass_legacy.KekLib.OurMatplotlib3D) demo_plot() (in module molass_legacy.SerialAnalyzer.AffineDemo) (ScatteringBaseline method) (SimData method) demo_real() (in module molass_legacy.Peaks.HyperbolaDemo) (in module molass_legacy.Peaks.HyperbolaFit) demo_run_md() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) DemoDialog (class in molass_legacy.SecTheory.FitTrialNonCf) demoN() (in module molass_legacy.Wave.ScatteringN) DenoiseFigures (class in molass_legacy.Prob.DenoiseFigures) denss_3DFs() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) denss_fit_data() (DenssGuiDialog method) denss_thread() (DenssGuiDialog method) DenssFitDataDialog (class in molass_legacy.DENSS.DenssFitData) DenssGuiDialog (class in molass_legacy.DENSS.DenssGui) DenssLoghandler (class in molass_legacy.DENSS.DenssDriver) DenssManager (class in molass_legacy.DENSS.DenssManager) DenssManagerDialog (class in molass_legacy.DENSS.DenssManagerDialog) deriv_C_smooth_penalty_impl() (in module molass_legacy.Decomposer.MatrixFactorization) derivative_curve() (UvCorrectorSpline method) design_figure() (in module molass_legacy.Extrapolation.MatrixFactorAlternate) destroy() (DebugPlot method) (Dialog method) (MplCanvas method) (ScrolledFrame method) (SimpleGuinierAnimation method) destroy_parent() (CanvasDialog method) (DebugCanvas method) (GuinierStartSelector method) destroy_shm_singleton() (in module molass_legacy.Optimizer.NpSharedMemory) detach_figure() (MplCanvas method) determin_2d_fig_limit() (GuinierRegionInspector method) determine_analysis_range() (GradualRegionAnalysis method) determine_integer_ratios() (in module molass_legacy.Optimizer.IntegerRatios) determine_intervals_deprecated() (ElutionDecomposer method) determine_ipi_interval() (Guinier method) determine_knots() (ElutionCurve method) determine_mapping_ranges() (ElutionMapper method) (in module molass_legacy.Microfluidics.MicrofluidicMapping) determine_safe_start() (GuinierLimit method) dev_init() (in module molass_legacy.SerialAnalyzer.DevSettings) dev_trial_entry() (in module molass_legacy.Tools.DevTrial) devel_test() (FullOptDialog method) (PeakEditor method) devel_test_back() (FullOptDialog method) devel_test_impl() (in module molass_legacy.Peaks.PeakDevel) (in module molass_legacy.Selective.DevelTest)

DeveloperOptionsDialog (class in molass_legacy.SerialAnalyzer.DeveloperOptions) (class in molass_legacy.Synthesizer.Development) deviation_ratio_tracer() (ElutionMapperAdjuster method) Dialog (class in molass_legacy.KekLib.OurCommonDialog) (class in molass_legacy.KekLib.OurTkinter) DialogWrapper (class in molass_legacy.KekLib.DebugPlot) diff() (NormalVectorDiff method) (PilatusImage method) diff_matrix() (in module molass_legacy.Extrapolation.SmoothnessPenalty) dini_sigmoid() (in module molass_legacy.Trimming.DiniSigmoid) dini_sigmoid_inv() (in module molass_legacy.Trimming.DiniSigmoid) direct_I2P() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) disable() (EntryFrame method) disable_buttons() (AdvancedFrame method) disable_toggle_button() (OutlineViewerFrame method) disc_demo() (in module molass_legacy.Saxs.PhaseRetrievalDemo) DiscretePdf (class in molass_legacy.Prob.DiscretePdf) DiscreteRV (class in molass_legacy.DMM.discrete_rv) DiscVoxels (class in molass_legacy.Saxs.SaxsSamples) dispersive_monopore() (in module molass_legacy.SecTheory.SecCF) dispersive_sec() (in module molass_legacy.SecTheory.Dondi2002) display_value() (TtkScale method) DisplaySlider (class in molass_legacy.SecTheory.ConformanceDemo) (class in molass_legacy.SecTheory.PeakAsymmetry) disproof_2d() (in module molass_legacy.Baseline.LambertBeerProof) dist_w1() (DiscreteRV method) DistInfo (class in molass_legacy.CharFunc.cf2DistFFT) Diverging (class in molass_legacy.KekLib.OurColorMaps) divide() (Arrow method) (Circles method) (in module molass_legacy.Reports.ZeroExtrapolationResultBook) (Parallelogram method) (TextGroup method) dnd_from_to() (in module molass_legacy.KekLib.TestUtils) do_a_folder() (in module molass_legacy.Batch.DataWalk) (in module molass_legacy.DevelUtils.FolderWalkers) (in module molass_legacy.RgProcess.RgCurveUtils) (SimpleGuinierTester method) do_a_range() (in module molass_legacy.Extrapolation.ExtrapolationProof) do_a_range_almerge() (in module molass_legacy.Extrapolation.ExtrapolationProof) do_a_range_definitive() (in module molass_legacy.Extrapolation.ExtrapolationProof) do_a_range_denoise() (in module molass_legacy.Extrapolation.ExtrapolationProof) do_action() (PilatusImageInfoTable method) do_adjustment() (ScatteringBaseCorrector method) do_analysis() (Analyzer method) do_assert() (VariationBase method) do_CommandMain() (in module molass_legacy.AutorgKek.CommandMainUtils) do_debug_plot() (ZeroExtrapolator method) do_debug_save() (ZeroExtrapolator method) do_devel_test() (ElutionMapperCanvas method) (ModelSelectFrame method) (PreviewButtonFrame method) do_extrapolation() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) do_finish() (Tester method) do_folder() (in module molass_legacy.SerialAnalyzer.DataUtils) do_for_a_file() (Manipulator method), [1], [2], [3] do_fullopt_execution() (Tester method) do_fullopt_initialization() (Tester method) do_fully_automatic() (Tester method) do_magic() (SingleInstance method) do_mapping() (PeakMapper method) do_mfc() (Tester method) do_microfluidic_analysis() (Analyzer method) do_minimal_to_debug() (Analyzer method) do_not_adjust_geometry (in module molass_legacy.KekLib.TkUtils) do_not_repeat() (NoExcelWarningDialog method) do_outline_only() (Tester method) do_preview() (Tester method) do_split() (in module molass_legacy.Prob.pylib_dphem) do_step() (SpikeDialog method), [1], [2] do_summary() (in module molass_legacy.SerialAnalyzer.StageSummary) do_summary_stage() (in module molass_legacy.SerialAnalyzer.StageSummary) do_v2_demo() (Tester method) do_v2_results() (Tester method) do_v2_thru_peak_editor() (Tester method) do_whole() (Tester method) dot_plot_wa() (in module molass_legacy.Extrapolation.ConjugateGradientThreeD) Dp (class in molass_legacy.KekLib.DebugPlot) DraggableArrow (class in molass_legacy.KekLib.DraggableArrow) DraggableCurves (class in molass_legacy.KekLib.DraggableCurves) DraggableLine (class in molass_legacy.SerialAnalyzer.DraggableLine) DraggableListbox (class in molass_legacy.KekLib.DraggableListbox) DraggablePoints (class in molass_legacy.SerialAnalyzer.DraggablePoints) draw() (AbsorbanceViewer method) (AbsorbanceViewerPub method) (AffineDemoDialog method) (Annotation3D method) (Arrow3D method) (BackgroundMaker2dFrame method) (BicomponentSimulator method) (CanvasFrame method) (ComplementaryView method) (DebugPlot method) (Demo method) (DriftLinearModel method) (DualSpace method) (EdViewer method) (ElutionCurveFrame method) (ElutionCurvePicker2dFrame method) (ElutionMapperCanvas method) (ElutionMapperPlotter method) (ElutionModelEditor method) (GdTreedPlot method) (GuinierDiffFrame method) (GuinierDiffViewer method) (GuinierFrame method) (GuinierKratkyPlots method) (GuinierViewer method) (Inset2Din3D method) (LinTranAnim method) (LrfSource method) (ManualDecomposer method) (MappingZoomCanvas method) (MpInverseAnim method) (MpInverseAnim3D method) (NewGrain method) (OutlineViewer2dFrame method) (Particle method) (ProgressChart method) (RdAnim method) (SaxsSimulator method) (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ScatteringCurvePlotter method) (SimpleGuinierAnimation method) (SimpleGuinierScoreDialog method) (SimpleTutorial method) (SimulatedExtrapolationDialog method) (SolidGrain method) (SsdcAnalysis method) (SvdAnimation method) (SvdFrame method) (SvdTutorial method) (UnfoldingTutorial method) (VoxelFFT method) draw1() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) draw1_impl() (in module molass_legacy.RangeEditors.DecompPlotUtils) draw2() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) draw3d() (SvdFrame method) draw_2d_figs() (in module molass_legacy.Trimming.UvDiffEffects) draw_3d() (AbsorbanceViewerPub method) (BpaInspector method) (GuinierRegionInspector method) (in module molass_legacy.UV.AbsorbanceViewUtils) (OutlineViewer3dFrame method) draw_3d_absorbance() (AbsorbancePlot method) draw_3d_absorbance_detail() (AbsorbancePlot method) draw_3d_detail() (AbsorbanceViewerPub method) (in module molass_legacy.UV.AbsorbanceViewUtils) draw_3d_for_gui() (ScatteringPlot method) draw_3d_for_setting_gui() (AbsorbancePlot method) draw_3d_scattering() (in module molass_legacy.SerialAnalyzer.ScatteringViewUtils) (Scattering3dSimpleFrame method) (ScatteringPlot method) draw_3d_with_svd() (AbsorbancePlot method) draw_a_plane() (InvestigatorDialog method) draw_ab_params() (SimpleTutorial method) (UnfoldingTutorial method) draw_all_parames() (AllParameters method) draw_all_parameters() (JobStateCanvas method) draw_anim() (BeamAnimDialog method), [1], [2], [3] draw_annotion() (AbsorbanceViewerPub method) draw_as_image() (in module molass_legacy.KekLib.OurPlotUtils) draw_axis_labels() (ComplementaryView method) draw_baseplane() (AbsorbanceViewer method) draw_blank() (EdViewer method) (SaxsSimulator method) draw_boundary_view() (BoundaryView method) draw_cd1_curve() (CdInspectionDailog method) draw_cd2_curve() (CdInspectionDailog method) draw_column() (in module molass_legacy.SecTheory.PlateTheory) draw_complement_impl() (ComplementaryView method) draw_complements() (ComplementaryView method) draw_components() (EditCanvas method) draw_components_with_bands() (ThreeStateDimerSolver method) (ThreeStateMonomerSolver method) (TwoStateSolver method) draw_corrected_start() (GuinierRegionInspector method) draw_curvature_etc() (Plotter method) draw_curve() (DenssGuiDialog method) draw_curves() (AqBqSimilarityDialog method) (CdInspectionDailog method) (FactorCurvePlot method) (PdbCrysolRouteDialog method) draw_decomposition() (InspectionInAnglesDialog method) draw_default_start() (GuinierRegionInspector method) draw_detector_image() (SaxsDetector method) draw_diff_curve() (CdInspectionDailog method) draw_ecurve() (RgAnalysisDialog method) draw_ecurve_at() (BpaInspector method) draw_elements() (PeakEditor method) draw_ellipse() (in module molass_legacy.Prob.pylib_dphem) draw_elution() (CdInspectionDailog method) (DelayAdjuster method) (ElutionTrimmingDialog method) (MdViewer method) (RangeInspectorDialog method) draw_elution_curve_area() (GuinierStartSelector method) draw_entries() (SolidGrain method) draw_exprapolated() (PairedDataSets method) draw_factor_curves() (SecInspection method) draw_fig1() (ElutionMapperPlotter method) draw_fig2() (ElutionMapperPlotter method) draw_figure() (OutlineFigure method) (RgVisibleFigure method) draw_figure1() (OutlineFigure method) draw_figure2() (OutlineFigure method) draw_figures() (DenoiseFigures method) (ManualAdjuster method) draw_flat_wavelength() (DataRestrictor2dFrame method) draw_folder() (FolderInfoPanel method) draw_func() (GuinierStartSelector method) draw_function() (TwoParamAnalysis method) draw_gamma_3d() (GammaVisualizer method) draw_guide_message() (OutlineFigure method) draw_guineier() (Plotter method) draw_guinier_interval() (GuinierStartSelector method) draw_indexed_state() (JobStateCanvas method) draw_init() (DelayAdjuster method) draw_line() (Worksheet method) draw_main() (JobStateCanvas method) draw_mapped() (ElutionMapperCanvas method) (ElutionMapperPlotter method) draw_mwrg_figure() (MwRgFigure method) draw_mws() (MwIntegrityPlot method) draw_next() (SpikeDialog method), [1], [2], [3], [4], [5] draw_outline_elution() (OutlineFigure method) draw_oval() (Worksheet method) draw_panel() (SvdTutorial method) draw_progress() (JobStateCanvas method) draw_ranges_impl() (ElutionMapperPlotter method) draw_rdr_chart() (in module molass_legacy.Selective.RdrChart) (in module molass_legacy.V2PropOptimizer.RdrChart) draw_recomputed_rg_curve() (RgCurveComputerDialog method) draw_residual_view() (ResidualView method) draw_restrict_lines() (DataRestrictor2dFrame method) draw_rg_bufer() (in module molass_legacy.RgProcess.RgCurve) draw_rg_text() (OutlineFigure method) draw_right_brace() (Worksheet method) draw_s() (SvdFrame method) draw_scatter_and_lines() (Plotter method) draw_scattering() (RangeInspectorDialog method) draw_score() (ScoreTransition method) draw_score_text() (CdInspectionDailog method) draw_scores() (FvScoreInspecor method) (PeakEditor method) draw_scurve() (RgAnalysisDialog method) draw_sec_curve() (in module molass_legacy.SecTheory.SecParamsPlot) draw_selection() (BackgroundMaker2dFrame method) (DataRestrictor2dFrame method) (ElutionCurvePicker2dFrame method) (OutlineViewer2dFrame method) draw_selection_guide() (BackgroundMaker2dFrame method) (DataRestrictor2dFrame method) (ElutionCurvePicker2dFrame method) draw_singular_values() (CdInspectionDailog method) draw_slice_states_impl() (in module molass_legacy.Stochastic.ColumnSliceStates) draw_solved_data() (SimpleTutorial method) (UnfoldingTutorial method) draw_start_impl() (GuinierRegionInspector method) draw_state() (JobStateCanvas method) draw_state_impl() (JobStateCanvas method) draw_suptitle() (JobStateCanvas method) draw_svd() (SvdTutorial method) draw_test_data() (SimpleTutorial method) (UnfoldingTutorial method) draw_textbox() (Worksheet method) draw_texts() (MpInverseAnim3D method) draw_the_bridge_suggested_curves() (BackgroundMaker2dFrame method) draw_title() (PeakEditor method) draw_transition() (ParameterTransitionPlot method) draw_U() (SvdFrame method) draw_V() (SvdFrame method) draw_varied_proportions() (VariedPropAnalysis method), [1] draw_voxel() (in module molass_legacy.Tutorials.VoxelUtils) draw_voxels() (in module molass_legacy.Saxs.Terbium) draw_wave_length_side_2d() (AbsorbancePlot method) draw_wedges() (in module molass_legacy.Stochastic.ColumnSimulation) draw_whole() (Qmm3dFigure method) draw_window() (QmmWindowSetting method) draw_zoomed() (Qmm3dFigure method) draw_zoomed_peaks_for_proof() (in module molass_legacy.Mapping.MappingOptimizer) DriftAnalyzer (class in molass_legacy.SerialAnalyzer.DriftAnalyzer) DriftLinearModel (class in molass_legacy.SerialAnalyzer.DriftLinearModel) DriftLinearModelDialog (class in molass_legacy.SerialAnalyzer.DriftLinearModel) DriftSimulation (class in molass_legacy.SerialAnalyzer.DriftSimulation) DualEghMixture (class in molass_legacy.Prob.DualEghMixture) DualEvaluator (class in molass_legacy.Decomposer.DualEvaluator) DualOptimzer (class in molass_legacy.Decomposer.DualOptimzer) DualPairSelector (class in molass_legacy.Decomposer.DualOptimzer) DualSpace (class in molass_legacy.Tutorials.DualSpace) dummy() (in module molass_legacy.Processes.Dummy) (PilatusImageInfoTable method) dummy_simulation() (RgCurveComputerDialog method) DummyFit (class in molass_legacy.AutorgKek.KekTools) DummyRgCurve (class in molass_legacy.Batch.OptDataSetsProxy) dump_data() (ZeroExtrapolator method) dump_zx_report_args() (in module molass_legacy.Reports.ReportUtils) dw (concentration_smooth property) (profile_real_space property) (profile_smooth property) DxdiagInfo (class in molass_legacy.Env.GpuInfo)

E

e0 (in module molass_legacy.Peaks.ElutionModels) (in module molass_legacy.Prob.EghMixture) E11nInfo (class in molass_legacy.Prob.PairedDataSets) e_curve (BaseSurfaceSpline attribute) e_step() (GMM method) E_step() (in module molass_legacy.Prob.pylib_dphem) ecdf() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) EcurveProxyCds (class in molass_legacy.Baseline.LpmInspect) (class in molass_legacy.Baseline.LpmInspect_for_paper) ed_scatter() (in module molass_legacy.Saxs.EdPlotter) edit_to_full_sdmparams() (in module molass_legacy.Estimators.SdmEstimatorImpl) EditCanvas (class in molass_legacy.Peaks.EditCanvas) Edm (class in molass_legacy.SecTheory.Edm) EDM_estimator_test_impl() (in module molass_legacy.Estimators.TestTools) edm_func() (in module molass_legacy.SecTheory.Edm) edm_inspect() (in module molass_legacy.Models.RateTheoryDemo) EdmEstimator (class in molass_legacy.Estimators.EdmEstimator) EdmParams (class in molass_legacy.ModelParams.EdmParams) EdmParamsSheet (class in molass_legacy.ModelParams.EdmParamsSheet) EdmSliderInfo (class in molass_legacy.ModelParams.EdmSliderInfo) EdPlotter (class in molass_legacy.Saxs.EdPlotter) EdViewer (class in molass_legacy.Saxs.EdViewer) EGH (class in molass_legacy.Models.EGH) egh() (in module molass_legacy.Optimizer.ElutionModelsGPU) (in module molass_legacy.Peaks.ElutionModels) (in module molass_legacy.Prob.EghMixture) EGH_estimator_test_impl() (in module molass_legacy.Estimators.TestTools) egh_impl() (in module molass_legacy.Peaks.ElutionModels) egh_no_affine() (in module molass_legacy.Models.EGH) egh_params() (in module molass_legacy.Models.EGH) egh_pdf() (in module molass_legacy.Peaks.ElutionModels) (in module molass_legacy.Prob.EghMixture) EGH_TAU_UPPER_LIMIT (in module molass_legacy.Models.EGH) egh_x_from_height_ratio() (in module molass_legacy.Models.EGH) EGHA (class in molass_legacy.Models.EGH) egha() (in module molass_legacy.Models.EGH) egha_impl() (in module molass_legacy.Models.EGH) EghAdjuster (class in molass_legacy.ModelParams.EghAdjuster) EghAdvansedParams (class in molass_legacy.ModelParams.EghParams) EghaOptimzer (class in molass_legacy.Decomposer.DualOptimzer) EghEstimator (class in molass_legacy.Estimators.EghEstimator) EghMixture (class in molass_legacy.Prob.EghMixture) EghParams (class in molass_legacy.ModelParams.EghParams) EghParamsBase (class in molass_legacy.ModelParams.EghParams) EghParamsSheet (class in molass_legacy.ModelParams.EghParamsSheet) EghSampler (class in molass_legacy.Prob.EghBySampling) el_option_tracer() (OptStrategyDialog method) ElCurve (class in molass_legacy.SecSaxs.ElCurve) ellipsoid_approx_intensities() (in module molass_legacy.Theory.RoigSolvas2019) ellipsoid_scale() (in module molass_legacy.Theory.Anisotropy) ellipsoid_xyz() (in module molass_legacy.Theory.EllipsoidPlot) EllipsoidVoxels (class in molass_legacy.Saxs.SaxsSamples) elm_recs (PeakInfo attribute) elution_model_gui_tracer() (OptStrategyDialog method) ElutionBaseCurve (class in molass_legacy.SerialAnalyzer.ElutionBaseCurve) ElutionComposer (class in molass_legacy.Optimizer.ElutionComposer) ElutionCurve (class in molass_legacy.SerialAnalyzer.ElutionCurve) ElutionCurveFrame (class in molass_legacy.GuinierAnalyzer.GuinierDiffViewer) ElutionCurvePicker (class in molass_legacy.Tools.ElutionCurvePicker) ElutionCurvePicker2dFrame (class in molass_legacy.Tools.ElutionCurvePicker) ElutionCurvePickerFrame (class in molass_legacy.Tools.ElutionCurvePicker) ElutionDecomposer (class in molass_legacy.Decomposer.ElutionDecomposer) ElutionElementBar (class in molass_legacy.RangeEditors.DecompSpecPanel) ElutionMapper (class in molass_legacy.Mapping.ElutionMapper) ElutionMapperAdjuster (class in molass_legacy.Mapping.ElutionMapperAdjuster) ElutionMapperAnimation (class in molass_legacy.Mapping.ElutionMapperAnimator) ElutionMapperAnimator (class in molass_legacy.Mapping.ElutionMapperAnimator) ElutionMapperCanvas (class in molass_legacy.Mapping.ElutionMapperCanvas) ElutionMapperPlotter (class in molass_legacy.Mapping.ElutionMapperPlotter) ElutionMatrix (class in molass_legacy.LRF.ElutionMatrix) ElutionMixtureModel (class in molass_legacy.Decomposer.ElutionMixtureModel) ElutionModelEditor (class in molass_legacy.Decomposer.ElutionModelEditor) ElutionStainModel (class in molass_legacy.SerialAnalyzer.ElutionStainModel) ElutionTrimmingDialog (class in molass_legacy.Trimming.TrimmingInspection) embed_cushion() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_DecompDummy() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_DispersiveUtils() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_EdmEstimator() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_EdmParamInspect() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_Error() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_ErrorMonteCarlo() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_IFT() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_IterativeLrfSolverDemo() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_Models() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_OptRecsUtils() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_ParamsIterator() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_RatioInterpretIllust() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_Recon() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_SdmEstimator() (in module molass_legacy.Tools.EmbedCushion) embed_cushion_impl_UnifiedDecompResultTest() (in module molass_legacy.Tools.EmbedCushion) EMG (class in molass_legacy.Models.EMG) emg() (in module molass_legacy.Peaks.ElutionModels) emg_guess() (in module molass_legacy.Models.EMG) emg_no_affine() (in module molass_legacy.Models.EMG) emg_orig() (in module molass_legacy.Peaks.ElutionModels) emg_pdf() (in module molass_legacy.Prob.EmgMixture) emg_vs_edm() (in module molass_legacy.SecTheory.EdmDemo) emg_x_demo_plot() (in module molass_legacy.Models.EMG) emg_x_from_height_ratio() (in module molass_legacy.Models.EMG) EMGA (class in molass_legacy.Models.EMG) emga() (in module molass_legacy.Models.EMG) emga_demo_plot() (in module molass_legacy.Models.EMG) emga_guess_impl() (in module molass_legacy.Models.EMG) emga_impl() (in module molass_legacy.Models.EMG) EmgaOptimzer (class in molass_legacy.Decomposer.DualOptimzer) EmgBySampling (class in molass_legacy.Prob.EmgBySampling) EmgConvolutionDemo (class in molass_legacy.Decomposer.ConvolutionDemo) EmgMixture (class in molass_legacy.Prob.EmgMixture) EmgPeak (class in molass_legacy.DataStructure.EmgPeak) EmgPeakLite (class in molass_legacy.DataStructure.EmgPeak) EmgPeakProxy (class in molass_legacy.DataStructure.EmgPeak) emit() (DecompLoghandler method) (DenssLoghandler method) (ProgressLoghandler method), [1], [2] enable() (EntryFrame method) enable_buttons() (AdvancedFrame method) enable_copy() (ParamsSheetBase method) enable_selection() (ParamsSheetBase method) encode() (str method) endswith() (str method) ensure_peak_consistency() (ElutionMapper method) enters_stationary() (Particle method) entryconfig() (MenuButton method) EntryFrame (class in molass_legacy.Synthesizer.GuiSettingInfo) EnvInfo (class in molass_legacy.Env.EnvInfo) eoii_correct_opt_recs() (in module molass_legacy.Decomposer.OptRecsUtils) EoiiCorrector (class in molass_legacy.LRF.EoiiCorrector) eq_() (in module molass_legacy.KekLib.NoseTools) (in module molass_legacy.KekLib.NoseUtils) equal() (PilatusImage method) equation_of_plane_from_sphere_intersection() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) equations() (BiComponentSolver method) (GuinierPorodFit method) erfcxinv() (in module molass_legacy.KekLib.ScipyUtils) erfcxinv_impl() (in module molass_legacy.KekLib.ScipyUtils) error() (Logger method) error_callback() (DenssManager method) (Manager method) error_cleanup() (SerialExecuter method) error_model() (in module molass_legacy.Error.ErrorModel) (in module molass_legacy.SimTools.ErrorModel)

error_wrapup() (SerialExecuter method) ErrorAnalyzer (class in molass_legacy.Decomposer.ErrorAnalysis) ErrorFit (class in molass_legacy.AutorgKek.ErrorResult) ErrorFitResult (class in molass_legacy.AutorgKek.ErrorResult) ErrorModel (class in molass_legacy.Error.ErrorModel) (class in molass_legacy.SimTools.ErrorModel) ErrorResult (class in molass_legacy.AutorgKek.ErrorResult) estimate_coefficients() (in module molass_legacy.Protein.WypMassRatios) estimate_concentration_lambda() (mixture method) estimate_conformance_params() (EdmParams method) (EghParamsBase method) (in module molass_legacy.SecTheory.RetensionTime) estimate_conformance_params_fixed_poreexponent() (in module molass_legacy.SecTheory.RetensionTime) (SimpleSecParams method) estimate_dmax() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) (in module molass_legacy.DENSS.DmaxEstimation) estimate_egh_params() (EghEstimator method) estimate_gunier() (in module molass_legacy.SerialAnalyzer.ProgressInfoUtil) estimate_init_max_dist() (in module molass_legacy.SerialAnalyzer.ProgressInfoUtil) estimate_init_params() (GuinierPorodFit method) estimate_init_rgs() (in module molass_legacy.SecTheory.RetensionTime) estimate_initial_params() (in module molass_legacy.SecTheory.HermansEmg) estimate_L() (in module molass_legacy.Theory.SphericalFit) (StructureFactorBounds method) estimate_lognormal_psd() (AdvancedFrame method) estimate_LR() (in module molass_legacy.Theory.SphericalFit) estimate_monopore_exclcurve() (in module molass_legacy.SecTheory.MonoporeExclCurve) estimate_monopore_params() (in module molass_legacy.SecTheory.MonoPore) estimate_ncalls() (in module molass_legacy.Solvers.NcallsEstimator) estimate_params() (EdmEstimator method) (EghEstimator method) (EmgPeak method) (FdEmgEstimator method) (LjEghEstimator method) (RtEmgEstimator method) (SdmEstimator method) (StcEstimator method) estimate_peak_points() (CompositeInfo method) estimate_polypore_exclcurve() (in module molass_legacy.SecTheory.OligoporeExclCurve) estimate_profile_lambda() (mixture method) estimate_psd() (AdvancedFrame method) estimate_rg() (Guinier method) estimate_Rg() (in module molass_legacy.GuinierTools.Alsaker2017) estimate_RgL() (BoundedLrfSolver method) estimate_sec_params() (in module molass_legacy.SecTheory.MomentAnalysis) estimate_secparams_and_R() (in module molass_legacy.SecTheory.HermansEmg) estimate_side_from_pdb() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) estimate_t0upper_bound() (in module molass_legacy.SecTheory.T0UpperBound) estimate_tripore_exclcurve() (in module molass_legacy.SecTheory.TriporeExclCurve) estimate_true_concentration() (in module molass_legacy.ICIS.XrayLrfConc) estimate_uv_peak_points() (OptLrfInfo method) estimate_uv_scale_params() (in module molass_legacy.SecTheory.MonoPore) estimate_Vp_etal() (Sasrec method), [1] estimate_xmax() (FullOptDialog method) estimate_xr_peak_points() (OptLrfInfo method) estimator_test_impl() (in module molass_legacy.Estimators.TestTools) Et() (Sasrec method), [1] euler2matrix() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) euler_grid_search() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) eval() (EMG method) (EMGA method) (Model method) eval_file() (in module molass_legacy.KekLib.EvalUtils) eval_scaler() (Convolution method) evaluate() (BiComponentSolver method) (LogicalExpression method) (ModifyStateDialog method) (SigmoidChain method) evaluate_basic_quality() (SimpleGuinier method) evaluate_descending_side_upturn() (in module molass_legacy.Baseline.BaselineGuinier) evaluate_gp() (BiComponentSolver method) evaluate_grouping() (PeakMappingSolver method) evaluate_guinier_interval() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) evaluate_interval() (SimpleGuinier method) evaluate_mapping() (PeakMapper method) evaluate_mapping_features() (PeakMapper method) evaluate_mapping_impl() (PeakMapper method) evaluate_range() (IntensityData method) evaluate_rg_consistency() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) evaluate_slope() (HeadAnomalies method) ex_sigmoid() (in module molass_legacy.Trimming.Sigmoid) ex_sigmoid_inv() (in module molass_legacy.Trimming.Sigmoid) excel_availability() (in module molass_legacy.KekLib.ExcelCOM) ExcelComClient (class in molass_legacy.KekLib.ExcelCOM) ExcelLogChart (class in molass_legacy.KekLib.ExcelLogChart) ExcelManager (class in molass_legacy.ExcelProcess.ExcelManager) ExcelTeller (class in molass_legacy.ExcelProcess.ExcelTeller) ExceptionTracebacker (class in molass_legacy.KekLib.ExceptionTracebacker) excl_limit_tracer() (OptStrategyDialog method) exclude_abnormality() (in module molass_legacy.SerialAnalyzer.AbnormalityCheck) exclude_elution() (RawXray method) exclude_elution_impl() (RawXray method) exclude_intensities() (SerialData method) exclude_intensity() (SerialData method) ExclusionCurvepy (class in molass_legacy.SecTheory.ExclusionCurveSpike) exe_name() (in module molass_legacy.KekLib.BasicUtils) exec_callback() (DataRangeDialog method) exec_in_threaded_mainloop() (in module molass_legacy.KekLib.DebugPlot) exec_subprocess() (in module molass_legacy.KekLib.OurSubprocess) ExecInfo (class in molass_legacy.KekLib.ProgressInfo) (class in molass_legacy.SerialAnalyzer.SerialController) executables_check() (in module molass_legacy.KekLib.EnvironCheck) execute() (CommandMain method) (CrysolExecutor method) (DatgnomExecutor method) (ExcelManager method) (InputManager method) execute_and_monitor() (AdvancedFrame method) execute_for_all_data() (in module molass_legacy.Test.TestUtils) ExistingNmf (class in molass_legacy.Decomposer.ExistingNmf) ExistingNmfDemo (class in molass_legacy.Decomposer.ExistingNmf) exists_guinier_analysis_result() (in module molass_legacy.SerialAnalyzer.AnalyzerUtil) exit() (DelayAdjuster method) (LinkedToplevel method) (PreprocessDialog method) (SimpleTutorial method) (UnfoldingTutorial method) expand_coordinates() (in module molass_legacy.Saxs.Terbium) expandtabs() (str method) explode() (in module molass_legacy.Saxs.Terbium) Exponential (class in molass_legacy.Decomposer.ConvolutionDemo) export() (FullOptDialog method) (GraphicResult method) (LrfExporter method) (RgCurve method) (XrLrfResult method) ExSolver (class in molass_legacy.Extrapolation.ExSolver) ext (Image property) extend_debug_plot() (EmgPeak method) extimate_zero_extrapolation() (in module molass_legacy.SerialAnalyzer.ProgressInfoUtil) extract_concentration() (mixture method) extract_profile() (mixture method) extrapolate() (in module molass_legacy.SerialAnalyzer.AveragingDiscussion) (Sasrec method), [1] (ZeroExtrapolator method) extrapolate_impl_MP_inverse() (ZeroExtrapolator method) extrapolate_wiser() (ExtrapolationSolver method) ExtrapolationAnimationDialog (class in molass_legacy.Extrapolation.ExtrapolationAnimation) ExtrapolationDebugger (class in molass_legacy.Extrapolation.ExtrapolationDebugger) ExtrapolationDenssMenu (class in molass_legacy.Extrapolation.ExtrapolationDenssMenu) ExtrapolationSolver (class in molass_legacy.Extrapolation.ExtrapolationSolver) ExtrapolSolverDialog (class in molass_legacy.Extrapolation.ExtrapolSolverDialog)

F

F (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property) f() (in module molass_legacy.SerialAnalyzer.SphericalModel) (in module molass_legacy.SerialAnalyzer.SphericalModelNew) (in module molass_legacy.Theory.SolidSphere) (in module molass_legacy.Wave.dynamic_image2) F1() (in module molass_legacy.Theory.JsPedersen1997) f_imp() (in module molass_legacy.Theory.SolidSphere) FactorAnalysis (class in molass_legacy.Decomposer.FactorAnalysis) FactorCurvePlot (class in molass_legacy.Optimizer.FactorCurvePlot) fast_adjust() (PilatusImage method) fast_make_average_array() (PilatusImage method) fast_make_covered_array() (PilatusImage method) fd_estimate_initial_params() (in module molass_legacy.SecTheory.FoleyDorseyEmg) FdEmgEstimator (class in molass_legacy.Estimators.FdEmgEstimator) FdEmgParamsSheet (class in molass_legacy.ModelParams.FdEmgParamsSheet) feature_deviation() (in module molass_legacy.Distance.DeviationMeasure) fetch() (PdbFetcherDialog method) FewerPointMapper (class in molass_legacy.Mapping.FewerPointMapper) FftInvImpl (class in molass_legacy.SecTheory.SecPDF) FftInvPdf (class in molass_legacy.SecTheory.SecPDF) fienup_phase_retrieval() (in module molass_legacy.Saxs.PhaseRetrieval) figure() (DebugPlot method) (in module molass_legacy.KekLib.DebugPlot) figure_for_doc() (in module molass_legacy.DataStructure.BaseSurfaceDemo) file2string() (in module molass_legacy.KekLib.DiffUtils) FileEntry (class in molass_legacy.KekLib.TkCustomWidgets) FileInfoTable (class in molass_legacy.GuiParts.FileInfoTable) FileNodeEntry (class in molass_legacy.KekLib.TkCustomWidgets) filter_P() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) find() (str method) find_an_alternative_curve() (in module molass_legacy.UV.PlainCurve) find_best_mapping() (PeakMapper method) find_best_mapping_impl() (PeakMapper method) find_best_score() (in module molass_legacy.Rgg.LogUtils) find_better_peak() (SimpleGuinier method) find_boundary() (in module molass_legacy.Theory.SolidSphere) find_conc_file() (in module molass_legacy.Microfluidics.ConcNormalizer) find_conc_files() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) find_counter_part() (PeakMappingRefiner method) find_counter_part_bottom() (PeakMapper method) find_counter_part_peak() (PeakMapper method) find_diff_frames() (ScatterAnalysis method) find_extra_info() (DatasetFilter method) find_first_n_diff_frames() (ScatterAnalysis method) find_fit_limits() (EmgPeak method) find_foot() (CurveFeatures method) find_nearest_i() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) find_nearest_wall() (in module molass_legacy.Stochastic.StationaryMove) find_rotated_extreme_arg() (in module molass_legacy.Elution.CurveUtils) find_the_nearest_index() (PeakMapper method) find_valley_bottom_pair() (PeakMapper method) find_where_to_zoom() (Qmm3dFigure method) find_where_to_zoom_impl() (in module molass_legacy.Prob.Qmm3dFigure) find_widest_possible_ends() (UvCorrector method) find_windows() (in module molass_legacy.KekLib.MessageBoxUtils) findall() (in module molass_legacy.Synthesizer.ErrorLogCheck) fit() (Anisotropy method) (CfDomain method) (DriftLinearModel method) (DualEghMixture method) (EghAdjuster method) (EghMixture method) (EmgMixture method) (ExclusionCurvepy method) (ExtrapolationSolver method) (GMM method), [1], [2] (GmmAdaptor method) (GssMixture method) (GuinierPorodAnalyzer method) (GuinierPorodFit method) (MemAnnealing method) (Model method), [1] (MonoPoreModel method) (MonoPoreMovingZoneModel method) (ODR_WLS method) (OLS method) (RealisticCfDomain method) (RgRefiner method) (RotatedHyperbola method) (SAngler_WLS method) (SimpleUnfolding method) (SingleGmm method) (SmbMixture method) (SolidEllipsoidRev method) (SolidSphere method) (StcAdjuster method) (TriAxialEllipsoid method) (TwoSiteAlphaModel method) (TwoSiteModel method) (UnfoldingModel method) (UvAdjuster method) (UvCorrector method) (UvCorrectorEgh method) (UvCorrectorSpline method) (VariationalMixture method) (WLS method), [1] fit_a_component() (in module molass_legacy.Models.MomentFitting) fit_approx() (Anisotropy method)

fit_bent_sigmoid() (in module molass_legacy.Trimming.Sigmoid) fit_concentrations() (regals method) fit_consistency_func() (in module molass_legacy.AutorgKek.Quality) fit_consistency_with_stdev() (in module molass_legacy.AutorgKek.Quality) fit_curve() (Anisotropy method) fit_data() (in module molass_legacy.DENSS.DenssUtils) fit_data_bc() (in module molass_legacy.DENSS.DenssUtils) fit_data_impl() (in module molass_legacy.DENSS.DenssUtils) fit_data_plot() (in module molass_legacy.DENSS.DenssFitData) fit_elution() (ElutionMixtureModel method) fit_exp_dist() (in module molass_legacy.Theory.BoundedLRF) fit_impl() (CfDomain method) fit_locally() (ModeledCurve method) fit_peak() (ModeledCurve method) fit_peak_models() (RobustCurve method) fit_profiles() (regals method) fit_score_func() (in module molass_legacy.AutorgKek.Quality) fit_sigmoid_impl() (in module molass_legacy.Trimming.FlowChangeUtils) fit_sigmoid_impl_impl() (in module molass_legacy.Trimming.FlowChangeUtils) fit_single_pore() (in module molass_legacy.SecTheory.BasicModels) fit_single_pore_pdf() (in module molass_legacy.SecTheory.SinglePoreNonCf) fit_to_decomposition() (SecEstimator method) FitHistory (class in molass_legacy.Peaks.ModeledCurve) FitRecord (class in molass_legacy.Decomposer.FitRecord) fitting_demo() (in module molass_legacy.SecTheory.FitTrialNonCf) (in module molass_legacy.SecTheory.RealisticProof) fitting_demo_dispersive_sec() (in module molass_legacy.SecTheory.DondiProof) fitting_demo_impl() (in module molass_legacy.SecTheory.CavazziniProof) (in module molass_legacy.SecTheory.DondiProof) (in module molass_legacy.SecTheory.SepseyProof) fitting_demo_lognormal_pore_cf() (in module molass_legacy.SecTheory.SepseyProof) fitting_demo_monopore_gec() (in module molass_legacy.SecTheory.DondiProof) fitting_demo_single_site() (in module molass_legacy.SecTheory.CavazziniProof) fitting_demo_three_site() (in module molass_legacy.SecTheory.CavazziniProof) fitting_demo_two_site() (in module molass_legacy.SecTheory.CavazziniProof) fitting_demo_twopore_gec() (in module molass_legacy.SecTheory.DondiProof) fitting_demo_uniform_adsorption_energy() (in module molass_legacy.SecTheory.CavazziniProof) fitting_demo_uniform_mean_sojourn_time() (in module molass_legacy.SecTheory.CavazziniProof) fix_bubble() (in module molass_legacy.Peaks.RobustPeaks) fixed_guinier_start_tracer() (SpecialistOptionsDialog method) FixedBaselineOptimizer (class in molass_legacy.Optimizer.FixedBaselineOptimizer) FixedBaseResult (class in molass_legacy.UV.Absorbance) FlangeLimit (class in molass_legacy.Trimming.FlangeLimit) flash() (BlinkingFrame method) (BlinkingLabel method) flatten() (in module molass_legacy.Tutorials.VoxelUtils) flatten_remaining_peak() (in module molass_legacy.Trimming.FlowChangePrep) flattenable() (in module molass_legacy.UV.PlainCurve) FlexibleStruct (class in molass_legacy.KekLib.DynamicObjects) float_cut() (in module molass_legacy.Tools.ElutionCurvePicker) FlowChange (class in molass_legacy.Trimming.FlowChange) FlowChangeProxy (class in molass_legacy.SerialAnalyzer.PrerecogProxy) FlowSimulator (class in molass_legacy.Microfluidics.FlowSimulator) flush() (Console method) (StdoutLogger method) (StdoutRedirector method), [1], [2], [3] Foldedness (class in molass_legacy.UV.Foldedness) FolderEntry (class in molass_legacy.KekLib.TkCustomWidgets) FolderEntryDialog (class in molass_legacy.SSDC.FolderEntryDialog) FolderInfo (class in molass_legacy.InputProcess.FolderInfo) (class in molass_legacy.Synthesizer.PilatusUtils) FolderInfoPanel (class in molass_legacy.GuinierAnalyzer.SimpleGuinierGuiUtils) forget_3d_canvas() (BackgroundMakerFrame method) (ElutionCurvePickerFrame method) forget_left_frame() (OutlineViewerFrame method) format() (str method) format_coord() (in module molass_legacy.RangeEditors.DecompEditorFrame) (in module molass_legacy.RangeEditors.RangeEditorFrame) (in module molass_legacy.RangeEditors.SuperEditorFrame) (in module molass_legacy.Tools.OutlineViewer) format_duration() (in module molass_legacy.DENSS.DenssManagerDialog) (in module molass_legacy.MultiProc.ManagerDialog) format_func() (in module molass_legacy.Extrapolation.ExtrapolationAnimation) (in module molass_legacy.Extrapolation.ExtrapolSolverDialog) (OutlineFigure method) format_map() (str method) format_seconds() (in module molass_legacy.KekLib.TimeUtils) format_time() (in module molass_legacy.DENSS.DenssManagerDialog) (in module molass_legacy.MultiProc.ManagerDialog) formfactor() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) formfactor_factor() (in module molass_legacy.SimTools.HardSphere) FoulingBaseline (class in molass_legacy.Baseline.FoulingBaseline) freedom_plot() (in module molass_legacy.SecTheory.PoresizeFreedom) freeze_panes() (Worksheet method) friendly_time_str() (in module molass_legacy.KekLib.TimeUtils) frobenius_xdiffmax() (in module molass_legacy.Distance.FrobeniusXdiffmax) FrobeniusNorm (class in molass_legacy.LRF.LrfSolver) from_1d_curves() (ScatterAnalysis class method) from_space_separated_list_string() (in module molass_legacy.KekLib.NumpyArrayUtils) FromToSpinBoxPair (class in molass_legacy.Baseline.LpmInspect) fsc2res() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) Ft() (Sasrec method), [1] full_matrix() (MF method) FullBatch (class in molass_legacy.Batch.FullBatch) FullOptDialog (class in molass_legacy.Optimizer.FullOptDialog) FullOptInput (class in molass_legacy.Optimizer.FullOptInput) FullOptResult (class in molass_legacy.Optimizer.FullOptResult) func (partial attribute) FunctionChanger (class in molass_legacy.Optimizer.FunctionChanger) FunctionDebugger (class in molass_legacy.Optimizer.FunctionDebugger) FvScoreDetails (class in molass_legacy.Optimizer.FvScoreDetails) FvScoreInspecor (class in molass_legacy.Optimizer.FvScoreInspecor)

G

G() (in module molass_legacy.Theory.DjKinning1984) G0346 (class in molass_legacy.ObjectiveFunctions.G0346) G0525 (class in molass_legacy.ObjectiveFunctions.G0525) G0665 (class in molass_legacy.ObjectiveFunctions.G0665) G0705 (class in molass_legacy.ObjectiveFunctions.G0705) G1100 (class in molass_legacy.ObjectiveFunctions.G1100) G2010 (class in molass_legacy.ObjectiveFunctions.G2010) gamma0() (Sasrec method), [1] GammaVisualizer (class in molass_legacy.Prob.GammaVisualizer) Gaussian (class in molass_legacy.Decomposer.ConvolutionDemo) gaussian() (in module molass_legacy.Decomposer.ElutionMixtureModel) (in module molass_legacy.Gmm.MemAnnealing) (in module molass_legacy.Optimizer.ElutionModelsGPU) (in module molass_legacy.Peaks.ElutionModels) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils) (in module molass_legacy.QuickAnalysis.ModeledPeaks) gaussian_integral() (in module molass_legacy.QuickAnalysis.ModeledPeaks) gaussian_pdf() (in module molass_legacy.Prob.GaussianMixture) gca() (in module molass_legacy.KekLib.DebugPlot) gcentroids() (in module molass_legacy.Prob.pylib_dphem) gcf() (in module molass_legacy.KekLib.DebugPlot) GdAnimationDialog (class in molass_legacy.Extrapolation.ConjugateGradientThreeD) GdTreedPlot (class in molass_legacy.Extrapolation.ConjugateGradientThreeD) gec_dipore_phi() (in module molass_legacy.SecTheory.SecCF) gec_monopore_phi() (in module molass_legacy.SecTheory.SecCF) gec_oligopore_phi_impl() (in module molass_legacy.SecTheory.SecCF) gec_polypore_phi() (in module molass_legacy.SecTheory.SecCF) gec_tripore_phi() (in module molass_legacy.SecTheory.SecCF) generate() (SerialXrayScattering method), [1] generate_baseplane() (LowRankSolver method) generate_data() (SimulatedExtrapolation method) (UvAbsorbance method), [1] generate_demo_data() (in module molass_legacy.Gmm.MatsukenGmm) generate_enantiomers() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) generate_ensemble() (in module molass_legacy.Factors.PyChemLib3D) generate_ensemble_impl() (in module molass_legacy.Factors.PyChemLib3D) generate_funccode() (Proportions_ method) generate_noise() (ErrorAnalyzer method) generate_pattern() (AverageMakerDialog method) (AverageSubtractorDialog method) (IndividualSubtractorDialog method) (SubtractorFrame method) generate_pdb_from_defaults() (PDB method), [1] generate_samle() (SpikeDialog method), [1], [2] generate_samle_datasets() (in module molass_legacy.Prob.ProbDataUtils) (in module molass_legacy.Prob.ProbDensityUtils) generate_sample_data() (in module molass_legacy.Prob.ProbDataUtils) (in module molass_legacy.Prob.ProbDensityUtils) generate_sample_data_impl() (in module molass_legacy.Prob.ProbDataUtils) (in module molass_legacy.Prob.ProbDensityUtils) generate_sample_datasets() (PairedDataSets method) generate_samples() (in module molass_legacy.Decomposer.ElutionMixtureModel) genergy() (in module molass_legacy.Prob.pylib_dphem) geometry_cb() (InspectionInAnglesDialog method) geometry_fix() (in module molass_legacy.KekLib.TestTkUtils) (in module molass_legacy.KekLib.TkUtils) geometry_move() (in module molass_legacy.KekLib.TkUtils) get() (ArrayVar method) (BestPercentile method) (DataTreatment method) (NumComponents method) (OptimizerSettings method) (Table method) (TtkScale method) get_3d_magnitudes() (ReciprocalData method) get_3d_magnitudes_from_curve() (ReciprocalData method) get_3d_magnitudes_from_file() (ReciprocalData method) get_a_mapped_component_params() (in module molass_legacy.SSDC.MappingDecomposer) get_a_peak() (in module molass_legacy.QuickAnalysis.ModeledPeaks) get_a_prefix_record_new_style() (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) get_a_prefix_record_old_style() (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) get_accelerations() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) get_acceptable_XYW() (IntensityData method) get_action() (ExcelManager method) (InputManager method) get_active_indeces() (JobStateInfo method) (OptLogFile method) (ParamsSheetBase method) get_active_uv_data() (SerialDataLoader method) get_add_info() (in module molass_legacy.SerialAnalyzer.MappingAutoHelper) get_adjusted_a_spline() (ElutionMapper method) get_adjusted_result() (QrgLimitsAdjuster method) get_adjuster() (EdmParams method) (EghParamsBase method) get_adjustment_deviation() (ElutionMapper method) get_advanced_settings_text() (in module molass_legacy.Optimizer.OptimizerSettings) get_affine_info() (ElutionMapper method) get_all_param_values() (ModelEvaluator method) get_all_params_string() (ModelEvaluator method) get_all_poresizes() (in module molass_legacy.Experiment.ColumnTypes) get_almerge_results() (Demo method) get_almerge_switch_point() (RdAnim method) get_amino_acids_percent() (in module molass_legacy.Protein.UvSensitivity) get_amino_acids_props() (in module molass_legacy.Protein.WypMassRatios) get_analysis_area() (in module molass_legacy.Reports.GuinierExcelFormatter) get_analysis_folder_from_work_folder() (in module molass_legacy.Optimizer.TheUtils) get_analysis_guide_info() (in module molass_legacy.QuickAnalysis.AnalysisGuide) get_analysis_info_from_curve() (in module molass_legacy.DataStructure.AnalysisRangeInfo) get_analysis_ranges() (in module molass_legacy.SerialAnalyzer.AnalyzerUtil) (PreviewData method) get_analysis_ranges_for_exec() (in module molass_legacy.SerialAnalyzer.AnalysisRangeManager) get_analysis_ranges_from_sd() (in module molass_legacy.SerialAnalyzer.AnalysisRangeManager) get_angle_range() (PreliminaryRecognition method) get_anim_C() (EghMixture method) (EmgMixture method) get_anim_components() (EghMixture method) (EmgMixture method) (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) (in module molass_legacy.Prob.SklMixtureUtils) get_anim_data() (ExtrapolationSolver method) get_annotate_position() (in module molass_legacy.KekLib.MplAnnotate) get_applied_model() (DecompEditorDialog method) get_approx_peak_range() (ProbData method) (ProbDensity method) get_approximate_range() (IntensityData method) get_area() (TwoParamAnalysis method) get_argparser() (in module molass_legacy.DENSS.DenssUtils) get_args() (in module molass_legacy.Baseline.LambertBeer) get_around_slice() (in module molass_legacy.Elution.CurveUtils) (SerialData method) get_array() (SharedArray method), [1] get_array_info() (InputManager method) get_arrays() (SharedArrays method) get_artists() (Animation method) (Arrow method) (Circles method) (Parallelogram method) (TextGroup method) get_assert_info() (EmgPeak method) (in module molass_legacy.Decomposer.DualOptimzer) get_atsas_bin_path() (in module molass_legacy.ATSAS.AtsasVersion) get_atsas_signal() (Result method) get_atsas_versions() (FileInfoTable method) get_autorg_exe_paths() (in module molass_legacy.ATSAS.AutoRg) get_available_cuda_versions() (in module molass_legacy.Env.GpuInfo) get_averaged_data() (SerialData method) get_averaged_data_folder() (in module molass_legacy.QuickAnalysis.AnalyzerDialogProxy) get_averaged_ridge() (OutlineViewerFrame method) get_avgrec() (DualOptimzer method) get_axis() (Canvas3D method) (Inset2Din3D method) get_base_curve() (DataTreatment method) (FullOptInput method) get_base_curve_info() (DataTreatment method) (OptimalTrimming method) (UvPreRecog method) get_base_plane() (in module molass_legacy.Baseline.LambertBeer) get_basecurve() (UvBaseSurface method) get_baseline() (BaseEstimater method) (BasePlane method) (ScatteringBasecomposite method) (ScatteringBasespline method) (UvBaseSolver method) get_baseline_color() (ElutionMapperPlotter method) get_baseline_vertices() (in module molass_legacy.Baseline.Convex) get_baselines() (in module molass_legacy.SerialAnalyzer.DriftAnalyzer) get_baseplane() (BasePlane method) (FoulingBaseline method) (in module molass_legacy.Baseline.BaseScattering) (IntegralBaseline method) get_baseplane_params() (Absorbance method) get_basic_result() (Guinier method) get_best() (JobStateCanvas method) (ScoreTransition method) get_best_adjust_params() (in module molass_legacy.Baseline.Convex) get_best_combination() (MappingGmmDecomposer method) get_best_index() (JobStateCanvas method) (ScoreTransition method) get_best_mapping_features_params() (PeakMapper method) get_best_mapping_params() (PeakMapper method) get_best_params() (FullOptResult method) (JobStateCanvas method) get_better_rank_args() (LrfResultPool method) get_better_restriction() (AutoRestrictor method) get_better_restriction_impl() (AutoRestrictor method) get_better_results() (LrfResultPool method) get_bins() (DualEghMixture method) (QuadMM method) get_bootup_state() (in module molass_legacy.KekLib.MachineTypes) get_both_wavelengths() (in module molass_legacy.UV.PlainCurveUtils) get_bottomline_matrix() (Absorbance method) get_bottomline_vector() (Absorbance method) get_bottomline_vector_near_peak() (Absorbance method) get_bound_penalty() (RgInfo method) get_boundary() (in module molass_legacy.Rank.Boundary) get_boundary_params() (in module molass_legacy.Theory.SolidSphere) get_boundary_params_simple() (in module molass_legacy.Theory.SolidSphere) get_boundary_test_deferred() (Analyzer method) get_bounds() (StructureFactorBounds method) get_bridge_slice() (BackgroundMakerDialog method) (ElutionCurvePicker method) (OutlineViewerDialog method) get_buffer_ready() (SharedInfo method) get_callback_txt_path() (BackRunner method) get_callbacks() (JudgeHolder method) get_caller_attr() (in module molass_legacy.Tools.EmbedCushionUtils) get_caller_module() (in module molass_legacy.KekLib.BasicUtils) get_canvas_width() (DelayAdjuster method) (ElutionMapperCanvas method) (ElutionMapperPlotter method) get_cd_colors() (ElutionMapperCanvas method) (JudgeHolder method) get_cd_degree_from_range() (JudgeHolder method) get_cd_degrees() (JudgeHolder method) get_cd_list() (JudgeHolder method) get_cd_slice() (DataSet method) (SerialData method) get_cdf() (in module molass_legacy.Prob.itsample) get_cell_address() (ParamsSheetBase method) get_cfs_evaluated_peaks() (in module molass_legacy.Models.CfsEvalPeaks) get_ch2_fg_color() (in module molass_legacy.DENSS.DenssManagerDialog) (in module molass_legacy.MultiProc.ManagerDialog) get_change_name() (in module molass_legacy.Selective.AdvancedFrame) get_chart() (Worksheet method) get_chart_data_point() (Worksheet method) get_chart_width_adjust_ratio() (in module molass_legacy.Reports.ExcelEnvDepend) get_chassistype_name() (in module molass_legacy.KekLib.MachineTypes) get_class_code() (FullOptResult method) get_class_code_from_logfile() (in module molass_legacy.Optimizer.FullOptUtils) get_cnv_ranges() (PreviewButtonFrame method) get_code_text() (in module molass_legacy.Selective.VariedPropAnalysis) get_color() (in module molass_legacy.KekLib.OurMatplotlib) (PnoScdMap method) get_colparam_bounds() (SdmEstimator method) (SdmParams method) get_colparam_bounds_bug() (SdmEstimator method) get_columnname() (in module molass_legacy.Experiment.ColumnTypes) get_columntype() (in module molass_legacy.Experiment.DataUtils) get_columntype_from_id() (in module molass_legacy.Experiment.ColumnTypes) get_columntype_from_name() (in module molass_legacy.Experiment.ColumnTypes) get_columntype_id_from_name() (in module molass_legacy.Experiment.ColumnTypes) get_com_version_string() (in module molass_legacy.AutorgKek.AppVersion) get_comid() (ExcelComClient method) get_comments() (FolderInfo method) get_common_parameter_names() (in module molass_legacy.ModelParams.EdmParams) (in module molass_legacy.ModelParams.EghParams) (in module molass_legacy.ModelParams.SdmParams) get_comp_params() (Edm method) get_component() (AbsorbancePlot method) get_component_indeces() (BaseSliderInfo method) get_component_splines() (RealisticCfDomain method) get_components() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils) (RgRefiner method) get_composite_ids() (CompositeInfo method) get_composite_penalty() (CompositeInfo method) get_composite_proportions() (CompositeInfo method) get_composite_show_flags() (CompositeInfo method) get_conc_depend() (DecompEditorDialog method) (PreviewButtonFrame method) (RangeEditorDialog method) (RangeSpecFrame method) (SpecPanel method) get_conc_depend_info() (JudgeHolder method) get_conc_params() (Absorbance method) get_conc_type() (ElutionMapper method) (ElutionMapperAdjuster method) get_conc_vector() (ElutionMapper method) (MapperProxy method) get_concatenated_range() (PairedRange method) get_connected_curve_info() (in module molass_legacy.GuinierTools.RgCurveUtils) get_copy() (DataSet method) (SerialData method) get_corrected() (in module molass_legacy.DataStructure.LPM) get_corrected_data() (Absorbance method) get_corrected_error() (BoundedLrfSolver method) get_corrected_matrix() (in module molass_legacy.DataStructure.LPM) get_corrected_ppn() (UvCorrector method) get_corrected_sd() (DataTreatment method) (StandardProcedure method) get_corrected_sd_impl() (in module molass_legacy.Baseline.BaselineUtils) get_corrected_vector() (Absorbance method) get_corrected_y() (UvCorrector method) get_counter_dict() (Counter method) get_covered_range() (in module molass_legacy.Peaks.RobustPeaks) get_cpuid() (in module molass_legacy.KekLib.MachineTypes) get_crossing_point() (SimpleSolver method) (TwoStateSolver method) get_ctrl_key_state() (in module molass_legacy.KekLib.ControlKeyState) get_cupy_version() (in module molass_legacy.Env.GpuInfo) get_curr_index() (JobStateCanvas method) get_curr_work_folder() (FullOptDialog method) get_current_dialog() (in module molass_legacy.KekLib.DebugPlot) get_current_frame() (DecompEditorDialog method) (OutlineViewerDialog method) get_current_fv() (JobStateCanvas method) get_current_messagebox() (in module molass_legacy.KekLib.CustomMessageBox) get_current_model() (AdvancedFrame method) (DecompEditorDialog method) get_current_modelname() (DecompEditorDialog method) get_current_object() (SerialDataLoader method) get_current_object_impl() (SerialDataLoader method) get_current_params() (JobStateCanvas method) get_current_params_array() (DecompEditorDialog method) get_current_peaks() (VariedPropAnalysis method), [1] get_current_rg_folder() (in module molass_legacy.Optimizer.OptDataSets) get_current_seq_index() (VariedPropAnalysis method) get_current_size() (RecentFolders method) get_cursor_widgets() (ElutionMapperCanvas method) get_curve() (Anisotropy method) get_curve_list() (in module molass_legacy.Models.Proportional) get_curve_segments() (RgCurve method) get_curve_similarity() (StandardProcedure method) get_curve_xy() (FullBatch method) get_curve_xy_impl() (in module molass_legacy.QuickAnalysis.ModeledPeaks) get_curves() (in module molass_legacy.Prob.EghMixture) (in module molass_legacy.Prob.EmgMixture) (in module molass_legacy.Prob.GaussianMixture) get_cut_num_peaks() (in module molass_legacy.Prob.PairedDataSets) get_data() (Image method) (ModelData method) (ModeledData method) (ObjectVoxels method) (SimData method) get_data_array() (FileInfoTable method) get_data_correction_state_text() (in module molass_legacy.QuickAnalysis.AnalysisGuide) get_data_info() (in module molass_legacy.Synthesizer.PilatusUtils) (in module molass_legacy.Synthesizer.PilatusUtilsNewStyle) (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) get_data_object() (SerialDataLoader method) get_data_shapes() (SerialData method) get_databridge() (in module molass_legacy.Batch.DataBridgeUtils) get_datcmp_info() (ScatterAnalysis class method) get_decomp_guide_message() (AnalysisGuide method) get_decomp_info() (AnalyzerDialogProxy method) (StandardProcedure method) get_decomp_necessity() (StandardProcedure method) get_decomp_result() (NumComponents method) get_decomp_score() (DecompDummyFrame method) (DecompEditorFrame method) get_def_expr() (EMGA method) get_default_angle_range() (PreliminaryRecognition method) get_default_angle_range_impl() (in module molass_legacy.Trimming.PreliminaryRg) get_default_baseline_type() (in module molass_legacy.Baseline.BaselineUtils) get_default_browser() (in module molass_legacy.Menus.GuiReferences) get_default_colors() (in module molass_legacy.KekLib.OurMatplotlib) get_default_editor_ranges() (ElutionCurve method) get_default_elution_slice() (BackgroundMaker2dFrame method) get_default_maxnum_trials() (in module molass_legacy.Peaks.PeakEditor) get_default_num_peaks() (in module molass_legacy.Optimizer.DefaultNumPeaks) get_default_num_plates() (in module molass_legacy.Experiment.DataUtils) get_default_paired_ranges() (ElutionCurve method) get_default_uv_wl_trimming() (in module molass_legacy.Trimming.TrimmingUtils) get_demo_index() (FullOptResult method) get_demo_info() (JobStateInfo method) get_denoise_rank_impl() (in module molass_legacy.Prob.PairedDataSets) get_denoised_error() (in module molass_legacy.DataStructure.SvdDenoise) get_denss_log_items() (in module molass_legacy.DENSS.DenssUtils) get_denssfolder() (in module molass_legacy.DENSS.DenssUtils) get_desired_serial_data() (PreviewButtonFrame method) get_dev_setting() (in module molass_legacy.SerialAnalyzer.DevSettings) get_devel_info() (in module molass_legacy.Synthesizer.Development) get_dialog() (LrfResultPool method) get_dict() (ArgParser method) get_dict_from_log() (in module molass_legacy.ATSAS.DatCmp) get_dict_info() (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) get_dictionary() (PersistentInfo method) (PersistentPy method) get_dirs_in_later_order() (in module molass_legacy.ATSAS.AutoRg) get_displacements() (DraggableCurves method) get_display_resolution() (in module molass_legacy.KekLib.MachineTypes) get_distance_ratio() (PeakRegion method) get_dmax_with_datgnom() (in module molass_legacy.DENSS.DenssUtils) get_doc_folder_url() (in module molass_legacy.Menus.GuiReferences) get_downloads_folder() (in module molass_legacy.KekLib.KnownPaths) get_dp() (in module molass_legacy.KekLib.DebugPlot) get_draw_params() (ElutionMapperPlotter method) get_drift_type() (PeakEditor method) (PeProxy method) get_dsets() (FullOptInput method) (PeakEditor method) (PeProxy method) get_dsets_from_work_folder() (JobStateInfo method) get_dsets_impl() (in module molass_legacy.Optimizer.OptDataSets) get_dual_optimized_info() (in module molass_legacy.Decomposer.DualOptimzer) get_dual_optimized_info_old() (in module molass_legacy.Decomposer.DualOptimzer) get_easier_curve_y() (in module molass_legacy.Trimming.FlowChangePrep) get_edit_mode() (ElutionMapperCanvas method) get_editor_ranges() (RangeEditorFrame method) get_egh_moments_list() (LrfSource method) get_elements_rgs() (CompositeInfo method) get_elm_info() (in module molass_legacy.Decomposer.DecompUtils) get_elution() (SimpleSec method) get_elution_curves() (SerialData method) get_elution_data() (MethodFile method) get_elutioncurve() (UvAbsorbance method), [1] get_elutions() (CompositeInfo method) get_emg_peaks() (ElCurve method) (ElutionCurve method) get_end_points() (ElutionCurve method) get_end_slices() (ElCurve method) (ElutionCurve method) (LpmInspector method) get_end_y() (ElCurve method) (ElutionCurve method) get_ends() (PeakRegion method) get_enhanced_params() (ModifyStateDialog method) get_entry_including() (SolidGrain method) get_env_messages() (in module molass_legacy.Env.EnvMessages) get_error_curve() (ErrorModel method), [1] get_estimator() (EdmParams method) (EghAdvansedParams method) (SdmParams method) get_evaluators() (DualOptimzer method) get_exact_emg_peaks_list() (in module molass_legacy.Trimming.AutoRestrictor) get_excluded_indeces() (FileInfoTable method) get_exe_version() (in module molass_legacy.KekLib.VersionUtils) get_exec_copy() (SerialData method) get_exec_copy_inside_of_flowchanges() (SerialData method) get_expected_results() (SimpleGuinierTester method) get_ext() (Image method) (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) get_extended_bounds() (EghParamsBase method) get_extended_x() (CurveSimilarity method) get_extra_num_components() (CompositeInfo method) get_extrapolation_solver() (DecompEditorFrame method) (RangeEditorFrame method) get_facecolors() (in module molass_legacy.KekLib.OurMatplotlib) get_factor_weights() (in module molass_legacy.AutorgKek.Quality) get_factors() (AdapterQualiy method) (Quality method) get_factors_with_fit_score() (AdapterQualiy method) (Quality method) get_figsize() (DecompEditorFrame method) (ElutionMapperPlotter method) (RangeEditorFrame method) (SuperEditorFrame method) get_figure_path() (in module molass_legacy.Rgg.UvAdjuster) (SimultaneousSolver method) get_file_index() (ScatteringPlot method) get_file_name() (UnknownControlPanel method) get_file_no() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) get_file_paths() (CrysolResultsEntry method) get_filename_extension() (in module molass_legacy.KekLib.BasicUtils) get_files() (FolderInfo method) get_filesize() (in module molass_legacy.KekLib.TestUtils) get_filtered_src() (DataFilter method) get_final_log_path() (Logger method) get_final_std_diff() (Analyzer method) get_first() (JobStateCanvas method) (ScoreTransition method) get_first_peak() (PeakRegion method) get_fit_error() (DecompDummyFrame method) (DecompEditorFrame method) (SuperEditorFrame method) get_fit_limits() (EmgPeak method) get_fit_model() (SimpleSolver method) get_fit_score() (UvAdjuster method) get_flange_limit() (in module molass_legacy.Trimming.PreliminaryRg) get_flat_info() (in module molass_legacy.UV.PlainCurveUtils) get_flat_info_impl() (in module molass_legacy.UV.PlainCurveUtils) get_flat_wavelength() (in module molass_legacy.UV.PlainCurveUtils) get_flat_wavelength_simple() (in module molass_legacy.UV.PlainCurveUtils) get_flow_changes() (FlowChange method) (FlowChangeProxy method) (PreliminaryRecognition method) (SimpleFlowChangeProxy method) get_folder_info() (InputManager method) (InputTeller method) get_folder_list() (FolderEntryDialog method) get_font_size() (in module molass_legacy.Prob.GroupingMatrix) get_foot_points() (CurveFeatures method) get_frame_class() (BackgroundMakerDialog method) (DataRangeDialog method) (ElutionCurvePicker method) (OutlineViewerDialog method) get_frame_classes() (BackgroundMakerFrame method) (DataRestrictorFrame method) (ElutionCurvePickerFrame method) (OutlineViewerFrame method) get_fromto_list() (PairedRange method) (PairedRangeProxy method) get_full_data_from_dict() (in module molass_legacy.ATSAS.DatCmp) get_fullopt_dialog() (V2Menu method) get_func() (ModelEvaluator method) get_func_code() (AutoExecManager method) get_function_class() (FullBatch method) (PeProxy method) get_fv_array() (JobStateCanvas method) get_gaussians() (ElutionMixtureModel method) get_geometry() (PilatusImageInfoTable method) get_gk_info() (SecSimulator method) get_global_env_info() (in module molass_legacy.Env.EnvInfo) get_global_frame() (DecompEditorDialog method) get_global_info() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) get_gmm() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils) get_good_top_candidates() (OptimalSmoothing method) get_gpu_reason_texts() (EnvInfo method) get_graphic_result() (LrfExporter method) get_graphics_card_info() (GpuInfo method) get_guide_info() (ElutionMapperCanvas method) (StandardProcedure method) get_guinier_data() (GuinierDiffViewer method) (GuinierViewer method) get_guinier_deviation() (BasicOptimizer method) get_guinier_lengths() (BaselineGuinier method) get_guinier_results() (BaselineGuinier method) get_guinier_start_index() (PreliminaryRg method) get_guinier_valid_xy() (IntensityData method) get_gunier_interval() (PreliminaryRecognition method) get_halfmax_points_of_a_peak() (OptimalSmoothing method) get_header() (Image method) get_header_record() (in module molass_legacy.Reports.ReportUtils) get_height_ratio() (ElutionCurve method) get_helper_info() (ElutionMapperCanvas method) get_hex_color() (in module molass_legacy.KekLib.OurMatplotlib) get_home_folder() (in module molass_legacy.KekLib.BasicUtils) get_home_folder_for_test() (in module molass_legacy.Test.TesterDialog) get_homopeakness_scores() (Homopeakness method) get_i_pos_values() (PairedDataSets method) get_id_info() (DataSet method) (SerialData method) get_ignorable_flags() (SuperEditorInfo method) get_ignore_bq() (ExtrapolSolverDialog method) get_image_file_names() (FolderInfo method) get_image_from_axis() (in module molass_legacy.KekLib.MplAnnotate) get_imermediate_topx() (ThreeStateDimerSolver method) (ThreeStateMonomerSolver method) get_impl_method_name() (in module molass_legacy.Optimizer.OptimizerUtils) get_imroved_mapping() (PeakMapper method) get_in_data_folder() (in module molass_legacy.Optimizer.FullOptUtils) get_in_folder() (in module molass_legacy.SerialAnalyzer.DataUtils) (StateSequence method) get_in_folder_info() (in module molass_legacy.Synthesizer.PilatusUtils) (RscSimulator method) get_ind() (DraggableLine method) get_info() (PdbCrysolRouteDialog method) (ProgressInfo method) (StateSequence method) get_info_for_reset() (RangeSpecFrame method) (SpecPanel method) get_info_from_crysol_fit_log() (in module molass_legacy.ATSAS.Crysol) get_info_from_crysol_log() (in module molass_legacy.ATSAS.Crysol) get_info_from_folder() (StateSequence method) get_info_from_optview_range() (in module molass_legacy.Trimming.MomentTrimming) get_info_list() (DxdiagInfo method) (FolderEntryDialog method) (OutlineViewerFrame method) get_init_end_ranges() (LpmInspector method) get_init_estimate() (LiteBatch method) get_init_info() (FullOptResult method) (JobStateInfo method) get_init_object() (SerialDataLoader method) get_init_params() (PeakEditor method) (PeProxy method) (PropOptimizer method), [1] get_init_ranges() (in module molass_legacy.SerialAnalyzer.AnalyzerUtil) get_initial_data() (DelayOptimizer method) get_initial_range() (RangeInspectorDialog method) get_input_curve_data() (SaxsSimulator method) get_inset_slice() (MatrixData method) get_int_ranges() (ElutionMapper method) get_integral_basecurve() (Absorbance method) get_intensity_array() (SerialExecuter method) get_intersections() (in module molass_legacy.KekLib.CircleGeometry) get_it_ready_for_qmm() (App method) get_job_info() (FullOptDialog method) get_job_list() (FullOptResult method) get_job_name() (FullOptResult method) get_jobnames() (FullOptResult method) get_jump_point_base() (Absorbance method) get_kekpf_signal() (Result method) get_known_best_params() (FullOptDialog method) get_known_info_list() (ExtrapolSolverDialog method) get_labeltext_from_line() (in module molass_legacy.KekLib.MatplotlibUtils) get_largest_gradients() (in module molass_legacy.Trimming.FlowChangeCandidates) get_last() (JobStateCanvas method) (ScoreTransition method) get_last_cell_index() (PilatusImageInfoTable method) get_last_change_id() (AdvancedFrame method) get_last_change_id_from_advanced_frame() (PreviewButtonFrame method) get_last_displacement() (DraggableCurves method) get_last_report_folder() (TesterDialog method) get_latex_availability() (EnvInfo method) get_left_sigma_limit() (RobustPeaks method) get_limit() (CdLimit method) (FlangeLimit method) (GuinierLimit method) get_limit_impl() (CdLimit method) (FlangeLimit method) get_limits_roughly() (RobustPeaks method) get_linear_range_info() (FlowSimulator method) get_linear_slope_ends() (MethodFile method) get_linearity() (in module molass_legacy.GuinierAnalyzer.SimpleGuinierScore) get_list() (in module molass_legacy.DENSS.DenssManager) (in module molass_legacy.MultiProc.Manager) get_local_path() (in module molass_legacy.SerialAnalyzer.DataUtils) get_log_file() (FullOptResult method) get_log_items() (in module molass_legacy.Saxs.EdPlotter) get_log_str() (PairedRange method) get_log_text() (ProgressInfoDialog method) get_logfile() (Analyzer method) get_logger() (OptimalSmoothing method) (ResultFolderSelector method) get_low_peak_stand_out_ratio() (ElutionCurve method) get_low_percentile_params() (ScatteringBasecurve method) (ScatteringBaseline method), [1] get_lower_from_d1y() (ElutionCurve method) get_lower_from_y() (ElutionCurve method) get_lrf_args() (StandardProcedure method) get_lrf_elution_base() (in module molass_legacy.Trimming.UvBaseSolver) get_lrf_info() (SecSimulator method) get_lrf_source() (FullBatch method) get_lrf_source_impl() (in module molass_legacy.Batch.DataBridgeUtils) get_main_peak_rank() (PnoScdMap method) get_major_emg_peaks_list() (AutoRestrictor method) get_major_peak_info() (EcurveProxyCds method), [1] (ElutionCurve method) (MockCurve method) (PeakCurve method) get_major_rank_info() (LrfResultPool method) get_major_valley_bottoms() (ElutionCurve method) get_mapped_curves() (PeakMapper method) get_mapped_flow_changes() (ElutionMapper method) (FlowChange method) get_mapped_info() (CurveSimilarity method) (ElutionMapper method) (in module molass_legacy.Trimming.TrimmingInfo) get_mapped_params() (FullBatch method) (FullOptInput method) get_mapped_peaks() (in module molass_legacy.Batch.BatchMappingImpl) get_mapped_points() (AutoRestrictor method) get_mapped_slope_and_intercept() (Absorbance method) get_mapper() (in module molass_legacy.Tools.MapperSingleton) get_mapper_for_the_test() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) get_mapper_opt_params() (in module molass_legacy.Mapping.MappingParams) get_mapper_simplest_params() (in module molass_legacy.Mapping.MappingParams) get_mapping_params() (ElutionMapperAdjuster method) get_mask() (in module molass_legacy.Synthesizer.SynthesizerSettings) (RgCurve method) get_matching_peak_j() (UvSpecCurve method) get_matching_peak_lists() (MatchingPeaks method) get_matrix() (GroupingMatrix method) get_max() (in module molass_legacy.Reports.ZeroExtrapolationResultBook) get_max_monitor() (in module molass_legacy.KekLib.MultiMonitor) get_maxnum_trials() (PeakEditor method) (PeProxy method) get_method_name() (in module molass_legacy.Optimizer.OptimizerUtils) get_min() (in module molass_legacy.Reports.ZeroExtrapolationResultBook) get_min_max_values() (AdvancedFrame method) (Proportions_ method) get_min_sci() (ElutionMapper method) get_minor_rank_info() (LrfResultPool method) get_model_data() (in module molass_legacy.SimTools.HardSphere) get_model_def_expr() (ModelEvaluator method) get_model_fit_errors() (DecompEditorDialog method) get_model_list() (DecompEditorDialog method) get_model_name() (BasicOptimizer method) (EdmParams method) (EghParamsBase method) (FullBatch method) (in module molass_legacy.Optimizer.OptimizerUtils) (ModelEvaluator method) (ModelSelectFrame method) (OptStrategyDialog method) (QuadMM method) (SdmParams method) get_model_param_list() (ElutionCurve method) get_model_x_from_ratio() (EmgPeak method) get_model_y() (EmgPeak method) get_modeled_curves() (ThreeStateDimerSolver method) (ThreeStateMonomerSolver method) (TwoStateSolver method) get_modeled_peaks() (FullBatch method) get_modeled_peaks_impl() (in module molass_legacy.QuickAnalysis.ModeledPeaks) get_modified_params() (in module molass_legacy.SecTheory.MonoPore) get_molecular_masses() (GuinierKratkyInfo method) get_moment_trimming_info() (in module molass_legacy.Trimming.MomentTrimming) get_monitor_list() (in module molass_legacy.KekLib.MultiMonitor) get_monitors() (in module molass_legacy.KekLib.MachineTypes) get_mouse_position() (in module molass_legacy.KekLib.MultiMonitor) get_mr_start_index() (EdmParams method) (EghAdvansedParams method) (EghParams method) (SdmParams method) get_mrc_file_path() (PdbFetcherDialog method) get_mtd_elution() (in module molass_legacy.Microfluidics.MicrofluidicElution) get_mtd_filename() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) get_mwrg_info() (in module molass_legacy.SecTheory.MwRgInfo) get_n_components() (FullBatch method) (PeProxy method) get_n_iterations() (PeakEditor method) (PeProxy method)

get_name() (BasicOptimizer method) (EGH method) (EGHA method) (EMG method) (EMGA method) (Model method) (SharedArrays method) get_name_for_title() (in module molass_legacy.Saxs.EdPlotter) get_nc() (StateSequence method) get_nearest_major_peak_index() (DualPairSelector method) (UnifiedDecompResult method) get_new_factor_weights() (in module molass_legacy.GuinierAnalyzer.AutorgKekAdapter) get_new_folder() (DataDebugger method) (in module molass_legacy.Pdb.PdbFetcherDialog) get_next() (JobStateCanvas method) (ScoreTransition method) get_next_best() (JobStateCanvas method) (ScoreTransition method) get_next_position_impl() (in module molass_legacy.Stochastic.StationaryMove) get_next_range() (ModeledCurve method) get_next_subfolder() (in module molass_legacy.SerialAnalyzer.DataUtils) get_normal_region() (Absorbance method) get_not_yet_done_indices() (PilatusImageInfoTable method) get_nth_bar_vertices() (DiscretePdf method) get_num_baseparams() (in module molass_legacy.ModelParams.BaselineParams) get_num_charts() (Worksheet method) get_num_components() (BasicOptimizer method) (CompositeInfo method) (in module molass_legacy.Prob.PairedDataSets) get_num_jobs() (FullOptResult method) get_num_matrices() (BasicOptimizer method) get_num_peaks() (ElutionMapper method) (OptStrategyDialog method) get_num_scores() (BasicOptimizer method) get_num_substantial_components() (CompositeInfo method) (OptLrfInfo method) get_nvcc_version() (in module molass_legacy.Env.GpuInfo) get_objective_function_info() (in module molass_legacy.Optimizer.FuncImporter) get_old_style_ranges() (AnalysisRangeInfo method) get_opencv_img_from_buffer() (in module molass_legacy.KekLib.MplAnnotate) get_opposite_frame() (OutlineViewerDialog method) get_opt_mappers() (PeakMappingSolver method) get_opt_params_from_ue() (ElutionMapper method) get_opt_params_from_xe() (ElutionMapper method) get_opt_view_range() (in module molass_legacy.Trimming.OptViewRange) get_opt_weight_info() (OptDataSets method) get_optimal_interval() (GuinierInterval method) get_optimal_props_text() (Proportions_ method) get_optimized_data() (DelayOptimizer method) get_optimizer() (FullBatch method) (FullOptResult method) (PeakEditor method) (ResultProxy method) get_optimizer_folder() (FullOptResult method) (in module molass_legacy.Optimizer.TheUtils) get_optimizer_folder_impl() (FullOptResult method) get_optimizer_indeces() (FlowSimulator method) get_optimizer_jobs_folder() (FullOptResult method) get_options() (OptStrategyDialog method) get_optjob_folder() (BackRunner method) get_optjob_folder_impl() (in module molass_legacy.Optimizer.TheUtils) get_optlogfile() (JobStateInfo method) get_optrec() (DualOptimzer method) get_order_penalty() (RgInfo method) get_original_peak_top_x_pair() (SerialData method) get_original_top_x() (OptimalSmoothing method) get_outfolder() (CustomInfo method) (in module molass_legacy.DENSS.DenssUtils) get_outside() (PeakRegion method) get_paired_range() (RangeSpecFrame method) (SpecPanel method) get_paired_ranges_from_params_array() (in module molass_legacy.Models.ModelUtils) get_param_bounds() (BasicOptimizer method) (EdmParams method) (EghParamsBase method) (SdmParams method) get_param_hints() (EGHA method) (EMGA method) (Model method) get_param_hints_dict() (DecompEditorFrame method) get_param_init_type() (PeakEditor method) (PeProxy method) get_param_value() (ModelEvaluator method) get_param_values() (ModelEvaluator method) get_parameter_names() (BasicOptimizer method) (EdmParams method) (EghAdvansedParams method) (EghParams method) (SdmParams method) get_parameters() (RankViewParamsDialog method) get_params() (Anisotropy method) (BasePlane method) (EmgPeak method) (FewerPointMapper method) (FitRecord method) (GMM method) (InitialGuess method) (JobStateCanvas method) (LambertBeerPlane method) (LinearityScore method) (LowPercentilePlane method) (ManualDecomposer method) (ScoreTransition method) (SecEstimator method) (Uv2dLpm method) get_params_for() (ParamsAdjuster method) get_params_history() (FitHistory method) get_params_sheet() (EdmParams method) (EghParamsBase method) (SdmParams method) get_params_string() (EGH method) (EGHA method) (EMG method) (EMGA method) get_paramslider_info() (BasicOptimizer method) (EdmParams method) (SdmParams method) get_parent() (in module molass_legacy.KekLib.DebugPlot) get_path() (in module molass_legacy.KekLib.KnownPaths) get_pdb_file() (in module molass_legacy.Pdb.PypdbLite) get_pe_proxy() (ModifyStateDialog method) get_peak2elem_dict() (in module molass_legacy.Decomposer.DecompUtils) get_peak_boundaries() (ElutionCurve method) get_peak_curve_info() (in module molass_legacy.Mapping.PeakCurve) get_peak_editor() (V2Menu method) get_peak_ends() (PeakRegion method) get_peak_ends_impl() (PeakRegion method) get_peak_ends_with_rotation() (PeakRegion method) get_peak_mean_x() (EghMixture method) (EmgMixture method) get_peak_models() (RobustCurve method) get_peak_params_advanced() (in module molass_legacy.Estimators.EghEstimator) get_peak_params_set() (EditCanvas method) (FullBatch method) get_peak_pos_array_list() (EdmParams method) (EghParamsBase method) (SdmParams method) get_peak_position() (ElutionCurve method) get_peak_region() (ElutionCurve method) get_peak_region_ends() (in module molass_legacy.QuickAnalysis.ModeledPeaks) get_peak_region_sigma() (ElCurve method) (ElutionCurve method) get_peak_region_width() (ElutionCurve method) (PeakCurve method) (ProxyCurve method) get_peak_top() (RotatedHyperbola method), [1] get_peak_tops() (RobustCurve method) get_peaks() (in module molass_legacy.DataStructure.EmgPeak) (LrfSource method) (RobustPeaks method) get_peaktop() (PeakModel method) get_peaktop_index() (FitHistory method) get_peaktop_slice() (in module molass_legacy.Baseline.BaselineGuinier) get_peaktop_xy() (EGH method) (Model method) get_peaktop_xy_bad() (EMG method) get_penalties() (SmoothnessPenalty method) get_penalties_bq_ignore() (SmoothnessPenalty method) get_penalty_bq_ignore_impl_numba() (in module molass_legacy.Extrapolation.SmoothnessPenaltyNumba) get_penalty_diff() (SmoothnessPenalty method) get_penalty_diff_bq_ignore() (SmoothnessPenalty method) get_penalty_diff_bq_ignore_impl_numba() (in module molass_legacy.Extrapolation.SmoothnessPenaltyNumba) get_penalty_diff_impl() (in module molass_legacy.Extrapolation.SmoothnessPenalty) get_penalty_diff_impl_numba() (in module molass_legacy.Extrapolation.SmoothnessPenaltyNumba) get_penalty_impl() (in module molass_legacy.Extrapolation.SmoothnessPenalty) get_penalty_impl_numba() (in module molass_legacy.Extrapolation.SmoothnessPenaltyNumba) get_penalty_weights() (UnknownControlPanel method) get_pickle_file_path() (in module molass_legacy.KekLib.PersistentInfo) get_pid() (ExcelComClient method) (ExcelTeller method) get_plot_axis() (in module molass_legacy.Saxs.SaxsSamples) get_plotarea() (ExcelLogChart method) get_plotcolors() (Foldedness method) get_pno_map() (LrfSolver method) get_point_from_angle() (SolidGrain method) get_points() (CurveFeatures method) get_ppk() (in module molass_legacy.Trimming.FlowChangeCandidates) get_pre_recog_copy() (PreliminaryRecognition method) get_pre_recog_mapping_params() (FullBatch method) get_preferable_browser() (in module molass_legacy.Menus.GuiReferences) get_preference() (in module molass_legacy.Synthesizer.Preferences) get_prefix_info_list() (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) get_preview_data() (PreviewButtonFrame method) get_preview_results() (StandardProcedure method) get_previous() (JobStateCanvas method) (ScoreTransition method) get_previous_best() (JobStateCanvas method) (ScoreTransition method) get_previous_compare_folder() (TesterDialog method) get_primary_eslice() (in module molass_legacy.ICIS.IcisDemo) get_primary_peak_info() (ElutionCurve method) get_primary_peak_num_points() (ElutionCurve method) get_primary_scurve() (in module molass_legacy.ICIS.IcisDemo) get_primarypeak_i() (ElCurve method) (ElutionCurve method) get_primarypeak_x() (ElCurve method) (ElutionCurve method) get_probabilistic_data() (RgCurve method) get_probably_corresponding_index() (in module molass_legacy.Elution.CurveUtils) get_procstate() (SharedInfo method) get_productnames() (in module molass_legacy.Experiment.ColumnTypes) get_progress() (FullOptDialog method) (ProgressDialog method) get_prop_vector() (AdvancedFrame method) get_propertyies() (in module molass_legacy.Synthesizer.PilatusImageProperty) get_proportional_curves() (in module molass_legacy.Models.Proportional) get_proportional_points() (in module molass_legacy.KekLib.NumpyUtils) get_proportions() (in module molass_legacy.QuickAnalysis.ModeledPeaks) (Model method) get_proportions_func() (AdvancedFrame method) (Proportions_ method) get_pw_data() (ScatterAnalysis method) get_pw_data_array() (ScatterAnalysis method) get_py_file_path() (in module molass_legacy.KekLib.PersistentPy) get_pytools_folder() (in module molass_legacy.SerialAnalyzer.DataUtils) get_q_statistics() (Tester method) get_qrg_limits_indeces() (Guinier method) get_qrg_min_max() (Plotter method) get_quality() (Guinier method) get_quality_signal() (Result method) get_range() (Model method) (OptViewRange method) (RangeInspectorDialog method) (RdAnim method) get_range_boudaries() (ElutionCurve method) get_range_edit_info() (UnifiedDecompResult method) get_range_exceptionally() (in module molass_legacy.Models.ModelUtilsException) get_range_from_elm_recs() (in module molass_legacy.Extrapolation.PeakSetSelector) get_range_info() (ElutionMapperCanvas method) get_range_list() (FitRecord method) get_range_params() (ModelEvaluator method) get_ranges() (AnalysisRangeInfo method) (SuperEditorInfo method) get_ranges_by_ratio() (ElutionCurve method) get_rank_hints() (RgDiffRatios method) get_rating() (MF method) get_ratio() (in module molass_legacy.Protein.UvSensitivity) get_ratio_cy_list() (in module molass_legacy.Optimizer.OptLrfInfo) get_raw_factors() (AdapterQualiy method) (Quality method) get_raw_flow_changes() (FlowChange method) (SimpleFlowChangeProxy method) get_rdr_hints() (JudgeHolder method) get_ready_for_optimization() (PeakEditor method) get_ready_for_peak_editor() (V2Menu method) get_ready_for_prepare() (InputData method) get_ready_for_scores_etc() (PeakEditor method) get_ready_from_folder() (JobStateInfo method) get_real_flow_changes() (FlowChange method) (MeasuredData method) (PreliminaryRecognition method) (SimpleFlowChangeProxy method) get_reason() (LogicalExpression method) get_reason_texts() (GpuInfo method) get_reciprocal() (ReciprocalData method) get_reconstructed_curve() (in module molass_legacy.GuinierTools.RgCurveUtils) get_reduced_conc() (in module molass_legacy.Theory.SynthesizedLRF) get_reduced_rank() (in module molass_legacy.Rank.Synthesized) get_redundant_xr_data() (InputTeller method) get_region_limit() (BasicOptimizer method) get_reliable_peak_top_x() (in module molass_legacy.Mapping.MappingOptimizer) get_remaining_time() (JobStateCanvas method) get_required_params() (BasicOptimizer method) get_reshaped() (SmoothnessPenalty method) get_resize_height() (PilatusImageInfoTable method) get_restart_info() (TesterDialog method) get_restart_info_v2() (TesterDialog method) get_restrict_info() (DataRestrictor2dFrame method) (OutlineFigure method) get_restrict_list_from_uv_flow_changes() (PreliminaryRecognition method) get_restrict_ranges() (in module molass_legacy.SerialAnalyzer.SerialDataLoader) get_restricted_mapped_info() (PreliminaryRecognition method) get_restricted_uv_data() (SerialDataLoader method) get_restricted_xray_data() (SerialDataLoader method) get_result() (Guinier method) (ResultFolderSelector method) get_result_from_log() (in module molass_legacy.Rgg.LogUtils) get_result_from_workfolder() (in module molass_legacy.Optimizer.FullOptResult) get_result_iterator() (FullOptResult method) get_rg() (ConformanceDemo method) (PreliminaryRecognition method) (PrerecogProxy method) get_rg_folder() (FullOptResult method) get_rg_params() (FunctionDebugger method) (SecInspection method) get_rg_start_index() (EdmParams method) (EghAdvansedParams method) (EghParams method) (SdmParams method) get_rgs_from_trs() (DummyRgCurve method) (RgCurve method) get_rgs_from_trs_depricated() (RgCurve method) get_right_sigma_limit() (RobustPeaks method) get_root_folder() (in module molass_legacy.SerialAnalyzer.DataUtils) get_row_index() (RawUv method) (RawXray method) get_row_index_impl() (in module molass_legacy.DataStructure.RawData) get_running_solver_info() (JobStateCanvas method) get_safe_approximate_max() (in module molass_legacy.KekLib.NumpyUtils) get_safe_check_stop() (GuinierLimit method) get_safe_flow_changes() (FlowChange method) get_safe_object() (TrimmingInfo method) get_safer_point() (FlowChange method) get_safer_point_impl() (in module molass_legacy.Trimming.CustomSigmoid) get_sarray() (InputTeller method) get_sasrec() (DenssFitDataDialog method) get_scale_mapped_y() (FewerPointMapper method) get_scaled_recs() (DecompInfo method) get_scaled_xr_params() (OptLrfInfo method) get_scattering_curve() (ReciprocalData method) get_scattering_curves() (BaselineGuinier method) get_scattering_y() (PreliminaryRg method) get_sci_list() (ElutionMapper method) get_score_names() (BasicOptimizer method) get_sd() (ElutionMapperCanvas method) (FullOptInput method) (in module molass_legacy.Theory.Survey) (in module molass_legacy.Tools.SdUtils) (MeasuredData method) (PeProxy method) (StandardProcedure method) get_sd_from_folder() (FullOptInput method) get_sd_from_folder_impl() (in module molass_legacy.Optimizer.TheUtils) get_sec_params() (FunctionDebugger method) (SecInfo method) (SecInspection method) get_seccol_params_for_disp() (EghParamsBase method) get_secparams() (RgVisibleFigure method) get_seed() (PeakEditor method) (PeProxy method) get_selected_indices() (PilatusImageInfoTable method) get_selected_monitor() (in module molass_legacy.KekLib.MultiMonitor) get_selection() (ParamsSelector method) (ParamsSheetBase method) get_serialdata_simply() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) get_setting() (in module molass_legacy.AutorgKek.Settings) (in module molass_legacy.Synthesizer.SynthesizerSettings) get_settings_path() (in module molass_legacy.Optimizer.OptimizerSettings) get_sharedinfo() (RgManager method) get_sheet_data_list() (SecConformance method) get_shift_key_state() (in module molass_legacy.KekLib.ControlKeyState) get_shifted() (UvBaseSpline method) get_shifted_elution_base() (Absorbance method) get_shm_proxy() (in module molass_legacy.Optimizer.NpSharedMemory) get_shm_singleton() (in module molass_legacy.Optimizer.NpSharedMemory) get_shot() (FitHistory method) get_side_residual() (ModeledCurve method) get_sigma() (ConformanceDemo method) (ElCurve method) get_sigma_bounds() (EghParamsBase method) get_sigma_points() (EmgPeak method) get_sigma_restriction() (AutoRestrictor method) get_significance_ratio() (PeakRegion method) get_significant_peaks() (ElutionCurve method) get_similarity() (FlowChange method) get_simple_sigma_points() (AutoRestrictor method) get_simple_sigma_points_impl() (AutoRestrictor method) get_simplest_params() (PeakMapper method) get_simply_mapped_y() (FewerPointMapper method) get_size() (PeakRegion method) get_skipbutton_name() (FullOptDialog method) get_slice() (DelayOptimizer method) (PeakRegion method) (TrimmingInfo method) get_sliced_data() (MatrixData method) get_sliced_peak_mapper() (PeakMapper method) get_slices_from_list() (in module molass_legacy.SecSaxs.DataSet) get_slices_impl() (in module molass_legacy.Trimming.PreliminaryRecognition) get_small_anlge_limit() (in module molass_legacy.Trimming.PreliminaryRg) get_solver_info() (FlowChange method) get_solver_ret_tuple() (LrfResultPool method) get_sorted_list() (RecentFolders method) get_sorted_params() (in module molass_legacy.Prob.EghMixture) (in module molass_legacy.Prob.EmgMixture) (in module molass_legacy.Prob.GaussianMixture) get_spline() (CfDomain method) (in module molass_legacy.KekLib.ScipyUtils) (RealisticCfDomain method) get_spline_smoothing() (in module molass_legacy.SerialAnalyzer.ElutionBaseCurve) get_spline_smoothing_better() (in module molass_legacy.SerialAnalyzer.ElutionBaseCurve) get_spline_smoothing_for_base() (in module molass_legacy.SerialAnalyzer.ScatteringBasecomposite) (in module molass_legacy.SerialAnalyzer.ScatteringBasespline) get_standard_baseline() (in module molass_legacy.Baseline.LambertBeer) get_standard_elution_base() (Absorbance method) get_standard_vector() (Absorbance method) get_start_stop_from_list() (in module molass_legacy.Trimming.OptimalTrimming) get_start_time() (ProgressInfo method) get_startup_info() (in module molass_legacy.KekLib.SubProcess) get_state_color() (in module molass_legacy.DENSS.DenssManagerDialog) (in module molass_legacy.MultiProc.ManagerDialog) get_state_text() (in module molass_legacy.DENSS.DenssManagerDialog) (in module molass_legacy.MultiProc.ManagerDialog) get_stochastic_model() (in module molass_legacy.Peaks.EghTauLimits) get_strategy() (BasicOptimizer method) (G1100 method) get_strategy_dialog() (V2Menu method) get_stream_buffer() (Logger method) get_stream_progresses() (ProgressInfo method) get_stream_states() (ProgressInfo method) get_sub() (DualEghMixture method) (QuadMM method) get_sub_folder() (DataDebugger method) get_suptitle_text() (TwoParamAnalysis method) get_t0_upper_bound() (BaseEstimator method) get_table() (in module molass_legacy.DENSS.DenssManager) (in module molass_legacy.MultiProc.Manager) get_target_ranges() (ElutionMapperPlotter method) get_tau_hints() (SpecPanel method) get_temp_absorbance() (in module molass_legacy.UV.AbsorbancePlot) get_the_background_info() (BackgroundMakerDialog method) get_them_roughly() (AutoRestrictor method) get_theretical_C() (in module molass_legacy.ICIS.IcisDemo) get_thread_count() (ExcelComClient method) get_thread_mode() (ExcelComClient method) get_tiffinfo() (in module molass_legacy.Synthesizer.PilatusImageProperty) get_time_elapsed() (JobStateCanvas method) get_time_started() (JobStateCanvas method) get_tk_root() (in module molass_legacy.KekLib.TkUtils) get_toggle_button_text() (ComplementaryView method) get_toggle_text() (ElutionMapperCanvas method) get_toggle_xlim() (BackgroundMaker2dFrame method) (ElutionCurvePicker2dFrame method) get_toggled_mode() (ElutionMapperCanvas method) get_trace_dialog() (V2Menu method) get_trans_indeces() (EdmParams method) (SdmParams method) get_treat() (PeProxy method) get_treated_sd() (DataTreatment method) get_treatment_path() (in module molass_legacy.Optimizer.TheUtils) get_trim_slice() (UvPreRecog method) get_trimmed_sd() (DataTreatment method) get_trimming_ends_from_list() (in module molass_legacy.Trimming.TrimmingInfo) get_trimming_info() (TrimmingResultDialog method) get_trimming_info_list() (in module molass_legacy.Trimming.TrimmingInfo) get_trimming_slices_from_list() (in module molass_legacy.Trimming.TrimmingInfo) get_tttt_data_objects() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) get_tuple() (SharedArray method), [1] get_tuples() (SharedArrays method) get_uniformly_mapped_a_curve() (CurveSimilarity method) get_uniformly_scaled_vector() (ElutionMapper method) get_upper_from_d1y() (ElutionCurve method) get_upper_from_y() (ElutionCurve method) get_usable_q_limit() (SerialData method) get_usable_range() (IntensityData method) get_usable_slice() (SerialData method) get_used_seeds() (SimultaneousSolver method) get_usual_preference() (in module molass_legacy.Synthesizer.Preferences) get_uv_base_const_state() (ElutionMapperAdjuster method) get_uv_base_params() (FullBatch method) get_uv_base_params_impl() (in module molass_legacy.Baseline.UvBaseline) get_uv_baseline() (FullBatch method) get_uv_baseline_deprecated() (FullBatch method) get_uv_correction_str() (MappingParams method) get_uv_curve() (DataSet method) (SerialData method) get_uv_cy_list() (OptLrfInfo method) get_uv_data() (InputTeller method) get_uv_data_from_file() (in module molass_legacy.Trimming.UvDiffEffects) get_uv_data_separate_ly() (DataSet method) (SerialData method) get_uv_elution_vector() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) (SerialData method) get_uv_filename() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) get_uv_proportions() (OptLrfInfo method) get_uv_sigma_points() (AutoRestrictor method) get_uv_slices() (PreliminaryRecognition method) get_uv_value() (ElutionMapper method) get_v2_copy() (SerialData method) get_valid_curves() (RgCurve method) get_valid_index() (in module molass_legacy.KekLib.NumpyUtils) get_valid_rgs() (CompositeInfo method) (OptLrfInfo method) get_valid_slices() (RgCurve method) get_valid_vector() (ValidComponents method) get_valley_bottom() (CurveFeatures method) get_valleys_to_modify() (ElutionDecomposer method) get_values() (SecInspection method) get_values_from_sliders() (SecSimulator method) get_variables() (ListingFrame method) get_variables_from_context() (in module molass_legacy.KekLib.ContextUtils) get_vars() (FromToSpinBoxPair method) get_vector_at() (Absorbance method) get_vector_from_slice() (in module molass_legacy.SecSaxs.DataSet) get_version() (ExcelComClient method) (in module molass_legacy), [1], [2] (in module molass_legacy.ATSAS.AtsasUtils) (in module molass_legacy.ATSAS.AtsasVersion) get_version_string() (in module molass_legacy.KekLib) get_versions() (in module molass_legacy.ATSAS.AtsasUtils) get_view_width_button_text() (JobStateCanvas method) get_w() (BidirectFft method) (CfSpace method) (FftInvImpl method) get_wanted_params() (EghParamsSheet method) (FdEmgParamsSheet method) (LjEghParamsSheet method) (RtEmgParamsSheet method) get_wave_len_ends() (Absorbance method) get_wavelengths() (Foldedness method) get_weights() (RgCurve method) get_wider_ends() (PeakRegion method) get_wider_info() (in module molass_legacy.Trimming.TrimmingInfo) get_wider_range() (in module molass_legacy.KekLib.PlotUtils) get_widest_possible_fit_slice() (UvCorrector method) get_widget_geometry() (in module molass_legacy.KekLib.TkUtils) get_widget_index() (ListingFrame method) get_Win32_ComputerSystem_str() (in module molass_legacy.KekLib.MachineTypes) get_Win32_Processor_str() (in module molass_legacy.KekLib.MachineTypes) get_window_rect() (in module molass_legacy.KekLib.TestUtils) get_with_props_values() (Proportions_ method) get_work_folder() (BackRunner method) get_work_info() (in module molass_legacy.Optimizer.TheUtils) get_work_info_for_demo() (in module molass_legacy.Optimizer.TheUtils) get_wv_index_vector() (Absorbance method) get_wyf_indeces() (in module molass_legacy.UV.WYF_Ratios) get_wyf_ratios() (in module molass_legacy.UV.WYF_RatiosSurvey) get_x() (UvSpecCurve method) (XrSpecCurve method) get_x2a_scale() (ElutionMapper method) get_xdata_for_mct() (MeasuredData method) get_xies_from_height_ratio() (in module molass_legacy.Models.ElutionModelUtils) get_xkey() (EmgPeak method) get_xlim_prog_axes() (JobStateCanvas method) get_xr_curve() (DataSet method) (SerialData method) get_xr_cy_list() (OptLrfInfo method) get_xr_data() (InputTeller method) (SharedInfo method) get_xr_data_separate_ly() (DataSet method) (SerialData method) get_xr_param_bounds() (EdmParams method) (EghParamsBase method) get_xr_params() (FunctionDebugger method) (SecInspection method) get_xr_peaks() (EditCanvas method) get_xr_proportions() (OptLrfInfo method) (PreDecomposer method) get_xr_slices() (PreliminaryRecognition method) get_xray_base_const_state() (ElutionMapperAdjuster method) get_xray_base_degree() (ElutionMapperAdjuster method) get_xray_baseline_type() (BaselineGuinier method) get_xray_baseline_type_second() (BaselineGuinier method) get_xray_correction_necessity() (ElutionMapperCanvas method) get_xray_correction_str() (MappingParams method) get_xray_curve() (DataSet method) (MockSd method) (SerialData method) get_xray_data() (SerialData method) get_xray_elution_vector() (DataSet method) (in module molass_legacy.Elution.CurveUtils) (SerialData method) get_xray_files() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) get_xray_scale() (DataSet method) (SerialData method) get_xray_scattering_info() (SummaryBook method) get_xray_shift() (PreliminaryRecognition method) (PrerecogProxy method) get_xy() (ElCurve method) (ElutionCurve method) get_xyz() (ObjectVoxels method) get_y() (UvSpecCurve method) (XrSpecCurve method) get_y_channel_index() (FlowSimulator method) get_y_channel_interval() (FlowSimulator method) get_y_channel_point() (DelayOptimizer method) get_yaxis_title_area() (ExcelLogChart method) get_zlim_for_3d_plot() (Absorbance method) get_zoom_area_ratio() (TwoParamAnalysis method) getFileDateTimes() (in module molass_legacy.KekLib.FileTimeUtils) getpid() (BackRunner method) getState() (DraggableListbox method) gini() (in module molass_legacy.KekLib.OurGini) (in module molass_legacy.KekLib.OurGiniSOF) global_fit_tracer() (DecompEditorDialog method) gm_curve() (in module molass_legacy.Prob.GaussianMixture) GMM (class in molass_legacy.Gmm.FoleyGmm) (class in molass_legacy.Gmm.MatsukenGmm) (class in molass_legacy.Gmm.ZhiyaZuoGmm) gmm_demo() (in module molass_legacy.Decomposer.ElutionMixtureModel) gmm_dphem_learn() (in module molass_legacy.Prob.gmm_dphem_learn) gmm_ll() (in module molass_legacy.Prob.pylib_dphem) gmm_plot1d() (in module molass_legacy.Prob.pylib_dphem) GmmAdaptor (class in molass_legacy.Gmm.ZhiyaZuoGmm) Gmn() (Sasrec method), [1] GpuDialog (class in molass_legacy.SerialAnalyzer.DeveloperOptions) GpuInfo (class in molass_legacy.Env.GpuInfo) GradualRegionAnalysis (class in molass_legacy.Trimming.GradualRegionAnalysis) grain_particle_test() (in module molass_legacy.Stochastic.ColumnSimulation) GraphicResult (class in molass_legacy.Optimizer.LrfExporter) grid() (BlinkingLabel method) (SizableEntry method) (SizableLabel method) grid_center() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) GroupingMatrix (class in molass_legacy.Prob.GroupingMatrix) GssMixture (class in molass_legacy.Prob.GssMixture) gt_() (in module molass_legacy.KekLib.NoseUtils) guess() (EGH method) (EGHA method) (EMG method) (EMGA method) (NumComponents method) guess_a_peak_with_prop() (EGH method) (EGHA method) (EMG method) (EMGA method) (Model method) guess_bent_sigmoid() (in module molass_legacy.Trimming.Sigmoid) guess_better_sigmoid_params() (in module molass_legacy.Trimming.UvBaseSolverInfo) guess_binary_peaks() (EGHA method) (Model method) guess_blank_location() (SimpleSolver method) (TwoStateSolver method) guess_boundary_value() (in module molass_legacy.Saxs.EdBoundary) guess_critical_points() (MethodFile method) guess_denoise_rank() (PairedDataSets method) guess_denoise_rank_try() (PairedDataSets method) guess_distortion_params() (in module molass_legacy.Trimming.UvBaseSolverInfo) guess_edm_initial_params() (in module molass_legacy.SecTheory.EdmSpike) guess_ending_time() (JobStateCanvas method) guess_exec_spec() (in module molass_legacy.Estimators.SdmEstimatorImpl) guess_for_all_data() (in module molass_legacy.Experiment.ColumnTypeEstimator) guess_from_decomp_opt_recs() (NumComponents method) guess_from_sd() (ColumnTypeEstimator method) guess_from_the_other() (Model method) guess_init_C() (SimpleSolver method) guess_init_curve_params() (SimultaneousSolver method) guess_init_mapping() (in module molass_legacy.SSDC.MappingDecomposer) (SimultaneousSolver method) guess_init_params() (in module molass_legacy.Selective.PropOptimizerEDM) (in module molass_legacy.Selective.PropOptimizerEGH) (in module molass_legacy.Selective.PropOptimizerEMG) (in module molass_legacy.Selective.PropOptimizerSTC) (in module molass_legacy.V2PropOptimizer.PropOptimizerEGH) guess_init_rgs() (SimultaneousSolver method) guess_initial_mapping_info() (UvAdjuster method) guess_initial_params() (EghMixture method) (EmgMixture method) (GssMixture method) (SmbMixture method) guess_initial_secparams() (in module molass_legacy.SecTheory.SecEstimator) guess_integral_scale() (UvBaseSpline method) guess_interval_from_rg() (GuinierKratkyPlots method) guess_lnpore_params() (LrfSource method) guess_mapping() (in module molass_legacy.SSDC.MappingDecomposer) guess_monopore_params() (LrfSource method) guess_multiple() (Model method) guess_multiple_edms() (in module molass_legacy.SecTheory.Edm) guess_n_compnents_trial() (in module molass_legacy.Optimizer.TheUtils) guess_n_components() (in module molass_legacy.Prob.MixedElutionModel) guess_optimal_prop() (Proportions_ method) guess_params() (UvBaseCurve method) (UvBaseSpline method) guess_peak_params() (in module molass_legacy.QuickAnalysis.PeakUtils) guess_peak_width() (in module molass_legacy.Peaks.RobustPeaks) guess_pointed_elution_no() (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) guess_range() (FlowSimulator method) (MethodFile method) guess_single_edm() (in module molass_legacy.SecTheory.Edm) guess_special_sigmoid_params() (in module molass_legacy.Trimming.SpecialSigmoid) guess_x0() (in module molass_legacy.Trimming.Sigmoid) guess_x0_impl() (in module molass_legacy.Trimming.SigmoidGuessX0) gui_loop() (in module molass_legacy.Processes.GUI) gui_main() (in module molass_legacy.Processes.GUI) GUID (class in molass_legacy.KekLib.KnownPaths) guide_message (DebugPlot attribute) GuiDenssToolsMenu (class in molass_legacy.Menus.GuiDenssTools) GuiDevelopmentMenu (class in molass_legacy.Menus.GuiDevelopment) GuiMctToolsMenu (class in molass_legacy.Menus.GuiMctTools) Guinier (class in molass_legacy.AutorgKek.Guinier) guinier_analysis() (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ScatteringPlot method) guinier_book() (ExcelManager method) guinier_fig_peak_no_tracer() (GuinierStartSelector method) guinier_interval() (SimpleGuinier method) guinier_kratky_plots_impl() (in module molass_legacy.Kratky.GuinierKratkyPlots) guinier_plot_dialog() (SpecialistOptionsDialog method) guinier_porod_fit() (DriftLinearModel method) guinier_start_point_tracer() (GuinierStartSelector method) GuinierAnalysisResultBook (class in molass_legacy.Reports.GuinierAnalysisResultBook) GuinierDeviation (class in molass_legacy.GuinierTools.GuinierDeviation) GuinierDiffFrame (class in molass_legacy.GuinierAnalyzer.GuinierDiffViewer) GuinierDiffViewer (class in molass_legacy.GuinierAnalyzer.GuinierDiffViewer) GuinierFrame (class in molass_legacy.GuinierAnalyzer.GuinierViewer) GuinierInterval (class in molass_legacy.AutorgKek.GuinierInterval) GuinierKratkyInfo (class in molass_legacy.Kratky.GuinierKratkyInfo) GuinierKratkyPlots (class in molass_legacy.Kratky.GuinierKratkyPlots) GuinierLimit (class in molass_legacy.Trimming.GuinierLimit) GuinierPorod (class in molass_legacy.AutorgKek.DataModels) GuinierPorodAgg (class in molass_legacy.AutorgKek.DataModelsAgg) GuinierPorodAnalyzer (class in molass_legacy.SerialAnalyzer.ZeroExtrapolator) GuinierPorodFit (class in molass_legacy.AutorgKek.GuinierPorodFit) GuinierPorodGeneral (class in molass_legacy.AutorgKek.DataModels) GuinierPorodGeneralLmfit (class in molass_legacy.AutorgKek.DataModels) GuinierPorodLmfit (class in molass_legacy.AutorgKek.DataModels) GuinierPorodTripple (class in molass_legacy.AutorgKek.DataModelsTripple) GuinierProofPlot (class in molass_legacy.SerialAnalyzer.GuinierProofPlot) GuinierRegionInspector (class in molass_legacy.Trimming.GuinierRegion) GuinierReportArgs (class in molass_legacy.Reports.GuinierExcelFormatter) GuinierResult (class in molass_legacy.Baseline.BaselineGuinier) GuinierStartSelector (class in molass_legacy.SerialAnalyzer.GuinierStartSelector) GuinierViewer (class in molass_legacy.GuinierAnalyzer.GuinierViewer) GuiReferencesMenu (class in molass_legacy.Menus.GuiReferences) GuiSecToolsMenu (class in molass_legacy.Menus.GuiSecTools) GuiSettingsMenu (class in molass_legacy.Menus.GuiSettings) GuiTutorialsMenu (class in molass_legacy.Menus.GuiTutorials)

H

H_concentration (mixture property) H_profile (mixture property) hard_sphere_curves() (in module molass_legacy.SecTheory.Distinction) has_acceptable_quality() (IntensityData method) has_an_uncomputable_rdr() (AnalysisGuideInfo method) has_bad_sci() (AnalysisGuide method) has_been_changed_after_refresh() (EntryFrame method) has_been_changed_ever() (EntryFrame method) has_decomp_editor() (ElutionMapperCanvas method) has_enough_num_files() (SerialDataLoader method) has_few_points() (ElutionCurve method) has_fronting_peak() (in module molass_legacy.Peaks.PeakFronting) has_gra_dialog() (DataRestrictor2dFrame method) has_mapper_canvas() (Analyzer method)

has_overlapping_peaks() (AnalysisGuide method) has_special() (FlowChange method) has_uncomputable_rdrs() (AnalysisGuide method) (JudgeHolder method) HeadAnomalies (class in molass_legacy.AutorgKek.HeadAnomalies) header (Image property) heading() (TkMiniTable method) height() (Table method) hidden() (Table method) highlight() (ParamsInspection method) highlight_active_params() (SdmParamsSheet method) hist_to_source() (in module molass_legacy.Prob.GaussianMixture) home_dir() (in module molass_legacy.KekLib.BasicUtils) Homopeakness (class in molass_legacy.QuickAnalysis.Homopeak) hyperbola() (in module molass_legacy.Peaks.HyperbolaFit)

I

I (GuinierPorodAnalyzer attribute) I0errf() (Sasrec method), [1] I_reg (mixture property) Icerrt() (Sasrec method), [1] icursor() (Table method) identify_ignorable_elements() (UnifiedDecompResult method) IFD (class in molass_legacy.KekLib.MinimalTiff) IfdEntry (class in molass_legacy.KekLib.MinimalTiff) ift_intensities() (in module molass_legacy.Theory.PbMoore1980) ift_optimize() (in module molass_legacy.IFT.IftOptimizeImpl) ignore_bq_tracer() (UnknownControlPanel method) ignore_tracer() (RangeSpecFrame method) (SpecPanel method) illust() (in module molass_legacy.Trimming.UvCorrectorIllust) illustrate_dmax() (DenssGuiDialog method) (in module molass_legacy.DENSS.DmaxEstimation) Image (class in molass_legacy.KekLib.OurImageIO) image_array() (PilatusImage method) ImagePropertyWindow (class in molass_legacy.Synthesizer.PilatusImageProperty) import_legacy_modules() (in module molass_legacy.DevelUtils.LegacyImporters) import_module_from_path() (in module molass_legacy.KekLib.ImportUtils) (in module molass_legacy.KekLib.OurImporter) import_objective_function() (in module molass_legacy.Optimizer.FuncImporter) improve_slices_if_possible() (PeakMapper method) in_folder_consistency_ok() (in module molass_legacy.Optimizer.FullOptUtils) inactivate() (TkMiniTable method) inc_var_tracer() (InvestigatorDialog method) including_fc_pos() (in module molass_legacy.Trimming.OptimalTrimming) increase_menu_availability() (in module molass_legacy.SerialAnalyzer.MakeItMoreClever) ind_ar_struc() (in module molass_legacy.GuinierTools.Alsaker2017) index() (range method) (str method) (Table method) index_generator() (McAnimation method) index_var_tracer() (InvestigatorDialog method) IndividualSubtractorDialog (class in molass_legacy.Microfluidics.IndividualSubtractorDialog) inertia_tensor() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) info() (Logger method) (LogPicker method) init_control_vars() (RangeInspectorDialog method) init_params (DualOptimzer attribute) init_tag() (ReadOnlyText method) init_velocity() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) initial_guess() (in module molass_legacy.ModelParams.SimpleSecParams) initial_guess_fixed_poreexponent() (SimpleSecParams method) InitialGuess (class in molass_legacy.SecTheory.InitialGuess) InitialGuessAdapter (class in molass_legacy.SecTheory.InitialGuess) InitialInfo (class in molass_legacy.Optimizer.InitialInfo) initialize() (ElutionMapper method) (FullOptDialog method) (in module molass_legacy.AutorgKek.Settings) (in module molass_legacy.DataStructure.InputDataUtils) (IntensityData method) initialize_from_optimizer() (SecSimulator method) initialize_penalties() (PDB2MRC method), [1] initilize() (EghMixture method) (EmgMixture method) (GMM method) (GssMixture method) (SmbMixture method) initilize_buffer() (SharedInfo method) initilize_for_unit_test() (SecSimulator method) InputData (class in molass_legacy.DataStructure.InputData) InputInfo (class in molass_legacy.InputProcess.InputTeller) InputManager (class in molass_legacy.InputProcess.InputManager) InputOutputDisplay (class in molass_legacy.SerialAnalyzer.InputOutputDisplay) InputTeller (class in molass_legacy.InputProcess.InputTeller) insert() (FileNodeEntry method) (ListingFrame method) (StateSequence method) insert_active() (Table method) insert_cols() (Table method) insert_row() (TkMiniTable method) insert_rows() (Table method) Inset2Din3D (class in molass_legacy.KekLib.OurMatplotlib3D) inset_3d_demo() (in module molass_legacy.KekLib.OurMatplotlib3D) inspect() (AutoRangeInspector method) inspect_score_transition() (JobStateCanvas method) inspect_sec_params() (in module molass_legacy.SecTheory.SecParamsSurvey) inspect_start() (AutoRangeInspector method) inspect_thread() (AutoRangeInspector method) inspection_close() (in module molass_legacy.Test.TempInspection) InspectionInAnglesDialog (class in molass_legacy.Microfluidics.InspectionInAngles) install() (UpdateDailog method) install_jupyterlab() (in module molass_legacy.Jupyter.Installer) int2hue() (in module molass_legacy.Tutorials.VoxelUtils) IntegralBaseline (class in molass_legacy.Baseline.IntegralBaseline) integrative_curve() (in module molass_legacy.Baseline.Baseline) integrative_curve_convex() (in module molass_legacy.Baseline.Convex) intensity() (SolidEllipsoidRev method) (SolidSphere method) (TriAxialEllipsoid method) IntensityData (class in molass_legacy.AutorgKek.IntensityData) intensityRC() (PilatusImage method) IntensitySmootherAveraging (class in molass_legacy.SerialAnalyzer.InputSmootherAveraging) interpolate_nan() (in module molass_legacy.GuinierTools.RgComputer) inv_chol() (in module molass_legacy.Prob.pylib_dphem) inverse() (BoundaryNorm method)

inverse_at() (in module molass_legacy.KekLib.NumInverse) inverse_int_value() (CurveSimilarity method) (CurveSimilarityProxy method) invert_score() (in module molass_legacy.Optimizer.FvScoreConverter) InvertibleSpline (class in molass_legacy.Models.InvertibleSpline) InvervalEvaluationModel (class in molass_legacy.AutorgKek.GuinierInterval) investigate_correction() (ElutionMapperCanvas method) investigate_diff_effects() (in module molass_legacy.Trimming.UvDiffEffects) InvestigatorDialog (class in molass_legacy.SerialAnalyzer.ScatteringBaseInvestigator) InvokableButton (class in molass_legacy.KekLib.CustomMessageBox) invoke() (InvokableButton method) (SlimButton method) invoke_excel_manager() (ExcelTeller method) invoke_input_manager() (InputTeller method) is_admin() (in module molass_legacy.KekLib.RunAsAdmin) is_adoptable() (DualPairSelector method) is_alive() (SerialController method) is_alive_cb() (Analyzer method) is_almost_empty_dir() (in module molass_legacy.KekLib.BasicUtils) is_alternating() (ScatteringBaseline method), [1] is_at_end() (ProgressInfoDialog method) is_better_quality() (in module molass_legacy.AutorgKek.Quality) is_blinking() (BlinkingFrame method) (BlinkingLabel method) is_boundary_candidate() (in module molass_legacy.SerialAnalyzer.ZeroExtrapolator) is_boundary_candidate_simple() (in module molass_legacy.SerialAnalyzer.ZeroExtrapolator) is_boundary_reg_params() (in module molass_legacy.SerialAnalyzer.ZeroExtrapolator) is_busy() (AverageMakerDialog method) (AverageSubtractorDialog method) (ConcNormalizerDialog method) (FullOptDialog method) (IndividualSubtractorDialog method) (PeakEditor method) (SubtractorFrame method) is_consistent() (PlateauRegions method) is_delayed() (DecompDummyFrame method) (DecompEditorFrame method) (Model method) is_dependent_peak() (UnifiedDecompResult method) is_empty_dir() (in module molass_legacy.KekLib.BasicUtils) is_empty_val() (in module molass_legacy.KekLib.OurTkinter) (in module molass_legacy.Synthesizer.GuiSettingInfo) is_end_states() (ProgressInfo method) is_ignorable_L_ratio() (in module molass_legacy.Trimming.FlowChangeUtils) is_ignorable_peak() (ElutionCurve method) is_in_the_region() (PeakRegion method) is_in_the_selection() (DatasetFilter method) is_in_the_wider_region() (PeakRegion method) is_included_in() (in module molass_legacy.Elution.CurveUtils) is_low_resolution() (in module molass_legacy.KekLib.TkUtils) is_microfluidic() (in module molass_legacy.SerialAnalyzer.DataUtils) is_new_style() (FolderInfo method) is_on_virtual_machine() (in module molass_legacy.KekLib.MachineTypes) is_optimizable_pair() (DualPairSelector method) is_optimizable_rec() (DualPairSelector method) is_ready() (DecompEditorDialog method) (DenssGuiDialog method) (InputManager method) (InputTeller method) (RangeEditorDialog method) is_roughly_centered() (ElutionCurve method) is_serial() (SerialData method) is_special() (PeakRegion method) is_stochastic() (BasicOptimizer method) (G1100 method) is_to_plot() (in module molass_legacy.SerialAnalyzer.Scattering3dSimple) (in module molass_legacy.SerialAnalyzer.ScatteringBasesurface) (in module molass_legacy.SerialAnalyzer.ScatteringViewUtils) is_traditional() (Model method) is_usedfolder() (in module molass_legacy.KekLib.BasicUtils) is_valid() (ResultEvaluator method) isalnum() (str method) isalpha() (str method) isascii() (str method) isdecimal() (str method) isdigit() (str method) Ish2avgr() (Sasrec method), [1] Ish2I0() (Sasrec method), [1] Ish2Iq() (in module molass_legacy.Theory.PbMoore1980) (Sasrec method), [1] Ish2lc() (Sasrec method), [1] Ish2mwVc() (Sasrec method), [1] Ish2mwVp() (Sasrec method), [1] Ish2P() (Sasrec method), [1] Ish2Q() (Sasrec method), [1] Ish2Qr() (Sasrec method), [1] Ish2rg() (Sasrec method), [1] Ish2Vc() (Sasrec method), [1] Ish2Vp() (Sasrec method), [1] isidentifier() (str method) islower() (str method) isnumeric() (str method) isprintable() (str method) isspace() (str method) istitle() (str method) isupper() (str method) iterate() (GMM method) (SpikeDialog method), [1], [2], [3], [4], [5] IteratedWLS (class in molass_legacy.Extrapolation.ExtrapolationProof) IterativeLrfSolver (class in molass_legacy.Trials.BoundedLRF.IterativeLrfSolver) iterator_test_from_dialog() (in module molass_legacy.Optimizer.ParamsIterator)

J

job_folder_applier() (in module molass_legacy.Optimizer.ResultFolderSelector) job_folder_checker() (in module molass_legacy.Optimizer.ResultFolderSelector) JobArgs (class in molass_legacy.V2PropOptimizer.PropOptimizerDialogs) JobInfo (class in molass_legacy.DENSS.DenssManager) (class in molass_legacy.MultiProc.Manager) joblist_folder_applier() (in module molass_legacy.Optimizer.ResultFolderSelector) joblist_folder_checker() (in module molass_legacy.Optimizer.ResultFolderSelector) JobStateCanvas (class in molass_legacy.Optimizer.JobStateCanvas)

JobStateInfo (class in molass_legacy.Optimizer.JobStateInfo) join() (str method) join_geometry() (in module molass_legacy.KekLib.TestTkUtils) (in module molass_legacy.KekLib.TkUtils) join_load_thread() (InputManager method) JudgeHolder (class in molass_legacy.QuickAnalysis.JudgeHolder) JudgeHolderProxy (class in molass_legacy.V2PropOptimizer.V1PreviewAdapter) JupyterMenu (class in molass_legacy.Menus.JupyterMenu) just_load_guinier_result() (in module molass_legacy.Reports.ReportUtils)

K

k (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property) k_concentration (mixture property) k_profile (mixture property) keep_scattering_curve() (RangeInspectorDialog method) kek_tools_folder() (in module molass_legacy.KekLib.PersistentInfo) (in module molass_legacy.KekLib.PersistentPy) key_press() (MplPlotCanvas method) keys() (DataTreatment method) (OptimizerSettings method)

keywords (partial attribute) kill() (DebugPlot method) (SerialController method) kill_paired_processes() (AutoExecManager method) kl_divergence() (VariationalMixture method) kmeans() (in module molass_legacy.Gmm.KPeaks) known_tracer() (ControlPanel method) KnownControlPanel (class in molass_legacy.Extrapolation.ExtrapolationControlPanel) KnownInfo (class in molass_legacy.Extrapolation.ExtrapolationSolver) KnownRec (class in molass_legacy.Extrapolation.PeakSetSelector) KPeaks (class in molass_legacy.Gmm.KPeaks) kratky_plot() (ScatteringCurveViewer method) kth_diag_indices() (in module molass_legacy.Extrapolation.SmoothnessPenalty)

L

L (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property) LaJudge (class in molass_legacy.Baseline.LinearAdjustment) LambertBeerPlane (class in molass_legacy.SerialAnalyzer.BasePlane) largest_indices() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) last_line() (ExceptionTracebacker method) last_lines() (ExceptionTracebacker method) LastMessage (class in molass_legacy.KekLib.OurMessageBox) latex_init() (in module molass_legacy.KekLib.OurManim) lay_over_scale() (ScatteringCurvePlotter method) lay_over_scale_drawn_data() (ScatteringCurvePlotter method) layout_distinction() (RangeInspectorDialog method) lcerrf() (Sasrec method), [1] learn() (ElutionStainModel method) legend() (in module molass_legacy.KekLib.DebugPlot) (MplClone method) LessPeakCurve (class in molass_legacy.Mapping.PeakMapper) LightFit (class in molass_legacy.AutorgKek.LightObjects) LightIntensity (class in molass_legacy.AutorgKek.LightObjects) LightIntensityData (class in molass_legacy.SerialAnalyzer.ElutionalSmootherUtils) LightResult (class in molass_legacy.AutorgKek.LightObjects) line_buttons_tracer() (RangeInspectorDialog method) linear_model() (in module molass_legacy.AutorgKek.LinearModel) linear_plot() (ScatteringCurveViewer method) linear_regression() (in module molass_legacy.Pomegranate.MappingGmmDecomposer) LinearBaseline (class in molass_legacy.Baseline.LinearBaseline) linearity_score100() (in module molass_legacy.SerialAnalyzer.LinearityScore) LinearityScore (class in molass_legacy.SerialAnalyzer.LinearityScore) lines_to_surface() (BaseSurface method) link() (LinkedToplevel method) LinkedToplevel (class in molass_legacy.KekLib.LinkedToplevel) LinTranAnim (class in molass_legacy.Tutorials.LinTranAnim) list2errorbars() (in module molass_legacy.Reports.ZeroExtrapolationResultBook) ListingFrame (class in molass_legacy.KekLib.ListingFrame) LiteBatch (class in molass_legacy.Batch.LiteBatch) lj_estimate_better() (in module molass_legacy.SecTheory.LanJorgensonEgh) lj_estimate_initial_params() (in module molass_legacy.SecTheory.LanJorgensonEgh) lj_force() (in module molass_legacy.Factors.PyChemLib) LjEghEstimator (class in molass_legacy.Estimators.LjEghEstimator) LjEghParamsSheet (class in molass_legacy.ModelParams.LjEghParamsSheet) ljust() (str method) lmfit_model() (BiComponentSolver method) lnp_model_interactive() (in module molass_legacy.Simulative.SimulationCushion) lnpore_study() (LrfSource method) load() (CompositeInfo method) (DataLoader method) (DataTreatment method) (OptimizerSettings method) (OptJobInfo method) (StandardProcedure method) load_bpo_table() (in module molass_legacy.SerialAnalyzer.BasePercentileOffset) load_callback_info() (FullOptResult method) load_composite() (FullOptResult method) load_conc_array() (SerialData method) load_data() (FullBatch method) (in module molass_legacy.GuinierTools.Alsaker2017_Test) (InputData method) (InputManager method) (PDB2MRC method), [1] (SerialDataLoader method) load_from_folders() (SerialDataLoader method) load_func() (in module molass_legacy.Selective.PropOptimizer) (in module molass_legacy.V2PropOptimizer.PropOptimizerUtils) load_guinier_result() (in module molass_legacy.Reports.ReportUtils) load_info() (FullOptResult method) load_init_params() (FullOptResult method) load_intensity_array() (SerialData method) load_intensity_files() (in module molass_legacy.DataStructure.InputDataUtils) (in module molass_legacy.SerialAnalyzer.SerialDataUtils) load_lrfsrc() (in module molass_legacy.Batch.BatchUtils) load_lrfsrc_with_mapping() (in module molass_legacy.Batch.BatchMappingUtils) load_old_way() (StandardProcedure method)

load_py_file() (in module molass_legacy.KekLib.PersistentPy) load_settings() (PeProxy method) load_trimming_txt() (in module molass_legacy.Trimming.TrimmingInfo) load_uv_array() (in module molass_legacy.DataStructure.InputDataUtils) (in module molass_legacy.SerialAnalyzer.SerialDataUtils) load_uv_data() (SerialDataLoader method) load_uv_file() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) load_v2_result() (in module molass_legacy.Batch.BatchUtils) load_xray_data() (SerialDataLoader method) load_xray_data_in_another_thread() (SerialDataLoader method) load_xray_data_only() (SerialDataLoader method) load_xray_data_only_impl() (SerialDataLoader method) load_xray_files() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) load_zx_report_args() (in module molass_legacy.Reports.ReportUtils) loadDatFile() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) loader() (in module molass_legacy.Processes.Loader) loadFitFile() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) loadOldFitFile() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) loadOutFile() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) loadProfile() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) locally_tall_enough() (ElutionCurve method) locally_tall_enough_evenif_rotated() (ElutionCurve method) LocalOptimizer (class in molass_legacy.SecTheory.LocalOptimizer) log() (ExceptionTracebacker method) log_diff_dialog() (GuiDevelopmentMenu method) log_exception() (in module molass_legacy.KekLib.ExceptionTracebacker) log_final_std_diff_check() (Tester method) log_id_values() (SerialData method) log_info_for_reset() (DecompEditorFrame method) (RangeEditorFrame method) log_paired_ranges() (in module molass_legacy.SerialAnalyzer.PairedRangeLogger) log_peak_info() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) log_plot() (ScatteringCurveViewer method) log_rg_info() (ExtrapolSolverDialog method) logComponent() (in module molass_legacy.Prob.pylib_dphem) logdet_chol() (in module molass_legacy.Prob.pylib_dphem) LogDiffDialog (class in molass_legacy.Test.TesterDialog) Logger (class in molass_legacy.KekLib.ChangeableLogger) (class in molass_legacy.KekLib.NoseUtils) LogGuinierKratkyPlotter (class in molass_legacy.SecTools.LogGuinierKratkyPlotter) LogicalExpression (class in molass_legacy.KekLib.LogicalExpression) loglikelihood() (GMM method) lognormal_pdf() (in module molass_legacy.SecTheory.LognormalStudy) lognormal_pore_cf() (in module molass_legacy.SecTheory.Sepsey2014) lognormal_pore_cf_iterate() (in module molass_legacy.SecTheory.Sepsey2014) lognormal_pore_phi_impl() (in module molass_legacy.SecTheory.LognormalPoreCF) lognormalpore_model_interactive() (in module molass_legacy.Simulative.SimulationMain) lognormalpore_model_interactive_impl() (in module molass_legacy.Simulative.LognormalPsd) LogPicker (class in molass_legacy.Env.EnvMessages) logpyt() (SmcModel method) logsumexp() (in module molass_legacy.Prob.pylib_dphem) logtrick2() (in module molass_legacy.Prob.pylib_dphem) lookup_unique_volume() (PDB method), [1] low_peak_stands_out_clearly() (ElutionCurve method) lower() (str method) lower_right_button_toggle() (ScrolledFrame method) LowPercentilePlane (class in molass_legacy.SerialAnalyzer.BasePlane) LowPercentileSpline (class in molass_legacy.SerialAnalyzer.LowPercentileSpline) LowRankSolver (class in molass_legacy.SerialAnalyzer.LowRankSolver) LPM_3d (class in molass_legacy.DataStructure.LPM) LPM_AnimationDialog (class in molass_legacy.SerialAnalyzer.LPM_Animation) lpm_right_button() (ElutionMapperAdjuster method) LpmInspector (class in molass_legacy.Baseline.LpmInspect) (class in molass_legacy.Baseline.LpmInspect_for_paper) LrfExporter (class in molass_legacy.Optimizer.LrfExporter) LrfInfo (class in molass_legacy.LRF.LrfInfo) LrfInfoProxy (class in molass_legacy.LRF.LrfInfoProxy) LrfResultPool (class in molass_legacy.LRF.LrfResultPool) LrfSolver (class in molass_legacy.LRF.LrfSolver) LrfSource (class in molass_legacy.Selective.LrfSource) LS_Rg (class in molass_legacy.AutorgKek.WLS_Rg) lstrip() (str method)

M

m_step() (GMM method) M_step() (in module molass_legacy.Prob.pylib_dphem) main() (in module molass_legacy.DENSS.denss.scripts.denss_fit_data) (in module molass_legacy.DENSS.denss.scripts.denss_pdb2mrc) (in module molass_legacy.MD.LjDemo) (in module molass_legacy.MD.NzDemo) (in module molass_legacy.Optimizer.optimizer) (in module molass_legacy.Processes.Main) main_impl() (in module molass_legacy.Optimizer.optimizer) main_tk() (in module molass_legacy.Optimizer.optimizer) MajorCurve (class in molass_legacy.Mapping.PeakMapper) make_a_curve() (ElutionMapper method) make_a_new_suggestion() (ModifyStateDialog method) make_an_rg_folder() (in module molass_legacy.RgProcess.RgCurveUtils) make_and_save_rgcurves() (in module molass_legacy.RgProcess.RgCurveUtils) make_anim() (EdPlotter method) make_animation() (Collection method) (UnknownControlPanel method) make_area_points() (in module molass_legacy.Baseline.PatchUtils) make_atsas_folder() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) make_availability_slices() (in module molass_legacy.RgProcess.RgCurve) make_average() (AverageMakerDialog method) make_average_array() (PilatusImage method) make_better_curve() (PeakMapper method) make_better_lower_part() (UvBaseSpline method) make_bounds() (SimultaneousSolver method) make_bounds_mask() (EdmParams method) (EghAdvansedParams method) (EghParams method) (SdmParams method) make_C_init() (MatrixFactorization method) make_C_matrix() (BasePlane method) (ModeledData method) make_cadidate_pairs() (SimpleGuinier method) make_call_back() (RgCurveDbMaker method) make_composite() (ElutionComposer method) make_composites_from_deviations() (in module molass_legacy.Optimizer.ElutionComposer) make_conc_vector() (PdataProxy method) (PreviewData method) (SimpleUnfolding method) make_covered_array() (PilatusImage method) make_cx_vector() (ZeroExtrapolator method) make_cx_vector_impl() (in module molass_legacy.SerialAnalyzer.ZeroExtrapolator) make_data() (SimpleUnfolding method) make_data_array() (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) make_data_sheet() (SecConformance method) make_datgnom_result_book() (in module molass_legacy.Reports.DatgnomResultBook) make_decomp_result() (VariedPropAnalysis method) make_decomp_result_impl() (in module molass_legacy.Selective.V1ParamsAdapter) make_default_analysis_range_info() (in module molass_legacy.Decomposer.DecompUtils) make_disp_time() (in module molass_legacy.KekLib.ProgressInfoDialog) make_elution_curves() (ElutionMapper method) make_elution_matrix() (ElutionMatrix method) make_entire_summary() (SummaryBook method) make_exclcurve_spline() (in module molass_legacy.Selective.LrfRgComputer) make_filename() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) make_filter_indeces() (DataFilter method) make_from_conc() (ConcMatrix method) make_from_mc_vector() (ConcMatrix method) make_from_sec_model() (ConcMatrix method) make_from_xr_ecurve() (ConcMatrix method) make_grids() (PDB2MRC method), [1] make_guinier_analysis_book() (in module molass_legacy.Reports.ReportUtils) make_guinier_analysis_report() (in module molass_legacy.SerialAnalyzer.StageGuinier) make_guinier_result_stamp() (in module molass_legacy.SerialAnalyzer.AnalyzerUtil) make_helper_info() (in module molass_legacy.SerialAnalyzer.MappingAutoHelper) make_indecies_text() (in module molass_legacy.KekLib.BasicUtils) make_index() (CheckbuttonFrame method) make_info_lists() (in module molass_legacy.Trimming.UvBaseSolverInfo) make_initial_guess() (in module molass_legacy.SecTheory.RetensionTime) make_it_compatible_from_sliced() (PeakMapper method) make_it_into_a_movie() (in module molass_legacy.Microfluidics.MinimumSurface) make_judge_info() (ElutionComposer method) make_just_one_peak_info() (ElutionCurve method) make_log_diff() (in module molass_legacy.KekLib.LogDiff) (Tester method) make_low_quality_rec() (SimpleGuinier method) make_mapped_adjustment() (ElutionMapper method) make_mapped_info_for_v2() (in module molass_legacy.Mapping.MappingV2Utils) make_mapped_uv() (in module molass_legacy.Pomegranate.MappingGmmDecomposer) make_mapped_valley_vector() (ElutionMapper method) make_mapped_vector() (ElutionMapper method) make_microfluidic_mapped_vector() (in module molass_legacy.Microfluidics.MicrofluidicMapping) make_microfluidic_mapping_info_impl() (in module molass_legacy.Microfluidics.MicrofluidicMapping) make_mtd_simulated_uv_data() (SerialDataLoader method) make_P_init() (MatrixFactorization method) make_P_matrix() (BasePlane method) (ModeledData method) make_params() (Model method) (SimpleTutorial method) (UnfoldingTutorial method) make_patch() (in module molass_legacy.KekLib.DiffUtils) make_pickle_file_path() (in module molass_legacy.KekLib.PersistentInfo) make_proof_info() (ElutionMapper method) make_proportional_mapping_info_impl() (in module molass_legacy.UV.XrayProportional) make_proportional_opt_results_impl() (in module molass_legacy.UV.XrayProportional) make_pseudo_result() (SecConformance method) make_publication_summary() (SummaryBook method) make_py_file_path() (in module molass_legacy.KekLib.PersistentPy) make_random_proportions() (SimultaneousSolver method) make_range_info() (AnalyzerDialogProxy method) (DecompEditorDialog method) (DecompEditorFrame method) (RangeEditorDialog method) (RangeEditorFrame method) make_range_info_impl() (in module molass_legacy.Decomposer.DecompUtils) make_record() (in module molass_legacy.Reports.ReportUtils) make_reduced_curve() (in module molass_legacy.Mapping.ReducedCurve) make_redundant_xray_data() (InputData method) make_restorable_ranges() (DecompEditorFrame method) (RangeEditorFrame method) make_reversed() (Parallelogram method) make_rg_curves() (RgCurveDbMaker method) make_rg_folders() (in module molass_legacy.RgProcess.RgCurveUtils) make_rich_peak_info() (ElutionCurve method) make_scaled_xray_curve_y() (ElutionMapper method) make_secondary_e_curve_at() (in module molass_legacy.UV.PlainCurve) make_simulation_data() (FlowSimulator method) make_slice_for_optimization() (in module molass_legacy.Mapping.MappingOptimizer) make_smooth_line() (SimpleGuinier method) make_smoothed_y() (in module molass_legacy.Elution.CurveUtils) make_summary_book() (in module molass_legacy.Reports.ReportUtils) make_temp_folder() (Analyzer method) (SerialExecuter method) make_thinner_curve() (PeakMapper method) make_traditional_fitrecs() (in module molass_legacy.Selective.BridgeUtils) make_uniformly_scaled_vector() (ElutionMapper method) make_uniformly_scaled_vector_in_another_way() (ElutionMapper method) make_unique_boundaries() (in module molass_legacy.Mapping.PeakMapper) make_unique_peak_info() (in module molass_legacy.Mapping.PeakMapper) make_uv_opt_recs() (PropOptimizer method) make_uv_opt_recs_adapted() (in module molass_legacy.Selective.V1ParamsAdapter) make_uv_proxy() (RawXray method) make_v2_results_dict() (Tester method) make_whole_mapped_vector() (ElutionMapper method) make_x_curve() (ElutionMapper method) make_xr_opt_recs() (PropOptimizer method) make_xr_opt_recs_adapted() (in module molass_legacy.Selective.V1ParamsAdapter) make_xray_proportinal_uv_data() (SerialDataLoader method) make_xray_proportinal_uv_data_impl() (in module molass_legacy.UV.XrayProportional) make_zero_extrapolation_book() (in module molass_legacy.Reports.ReportUtils) make_zero_extrapolation_overlay_book() (in module molass_legacy.Reports.ReportUtils) make_zx_filename() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) make_zx_summary() (SummaryBook method) makeOffsetPoly() (in module molass_legacy.KekLib.PolygonGeometry) maketrans() (str static method) manage_loop() (ExcelManager method) (InputManager method) Manager (class in molass_legacy.MultiProc.Manager) ManagerDialog (class in molass_legacy.MultiProc.ManagerDialog) manim_init() (in module molass_legacy.KekLib.OurManim) manipulate() (Manipulator method) Manipulator (class in molass_legacy.Trimming.DataRangeTestUtils) (class in molass_legacy.Trimming.FlowChangeTestUtils) (class in molass_legacy.Trimming.PeakRegionTestUtils) (class in molass_legacy.Trimming.UvCorrectorTestUtils) ManualAdjuster (class in molass_legacy.Mapping.ManualAdjuster) ManualDecomposer (class in molass_legacy.Decomposer.ManualDecomposer) map (class in molass_legacy.DENSS.denss) map_1to2() (SimplestMapper method) map_back_to_xray() (AutoRestrictor method) map_estimate() (VariationalMixture method) mapped_int_value() (CurveSimilarity method) mapped_value() (CurveSimilarity method) MappedInfo (class in molass_legacy.Mapping.MappingParams) (class in molass_legacy.Mapping.PeakMapper) MapperCanvasVariation1 (class in molass_legacy.Test.TesterMiscellaneous) MapperCanvasVariation2 (class in molass_legacy.Test.TesterMiscellaneous) MapperProxy (class in molass_legacy.V2PropOptimizer.V1PreviewAdapter) mapping_proof() (in module molass_legacy.Mapping.PeakMapper) MappingBatch (class in molass_legacy.Batch.BatchMappingUtils) MappingGmmDecomposer (class in molass_legacy.Pomegranate.MappingGmmDecomposer) MappingParams (class in molass_legacy.Mapping.MappingParams) MappingZoomCanvas (class in molass_legacy.SerialAnalyzer.MappingZoomCanvas) maps_well_linearly() (PeakMappingRefiner method) MatchingPeaks (class in molass_legacy.Trimming.MatchingPeaks) MatrixData (class in molass_legacy.DataStructure.MatrixData) MatrixFactorAlternate (class in molass_legacy.Extrapolation.MatrixFactorAlternate) MatrixFactorization (class in molass_legacy.Decomposer.ExistingNmf) (class in molass_legacy.Decomposer.MatrixFactorization) max_diff() (in module molass_legacy.KekLib.TestUtils) max_diff_assert_lt() (in module molass_legacy.KekLib.TestUtils) MAX_ITERATION_FMIN_CG (in module molass_legacy.Microfluidics.SimpleUnfolding) maxnum_trials_tracer() (FullOptDialog method) McAnimation (class in molass_legacy.Decomposer.ErrorAnalysis) McmcTrial_impl() (in module molass_legacy.Tools.EmbedCushion) mct_folder_walk() (in module molass_legacy.SerialAnalyzer.DataUtils) MctRangeInfo (class in molass_legacy.Microfluidics.MctRangeInfo) MdViewer (class in molass_legacy.DataStructure.MdViewer) MeasuredData (class in molass_legacy.DataStructure.MeasuredData) MemAnnealing (class in molass_legacy.Gmm.MemAnnealing) memorize_exclusion() (SerialDataLoader method) memorize_preview_data() (PreviewButtonFrame method) MenuButton (class in molass_legacy.KekLib.MenuButton) merge_books() (ExcelComClient method) (in module molass_legacy.SerialAnalyzer.StageSummary) merge_books_impl() (in module molass_legacy.SerialAnalyzer.StageSummary) merge_excel_books() (ExcelManager method) merge_into_a_book() (in module molass_legacy.KekLib.ExcelCOM) (in module molass_legacy.KekLib.OpenPyXlUtils) MergeBooksArgs (class in molass_legacy.SerialAnalyzer.StageSummary) Message (class in molass_legacy.KekLib.OurMessageBox) messagebox_shown() (in module molass_legacy.KekLib.TkTester) MethodAdjusterFrame (class in molass_legacy.Microfluidics.MethodAdjusterFrame) MethodFile (class in molass_legacy.Microfluidics.MethodFile) MethodFileSimulator (class in molass_legacy.Microfluidics.MethodFileSimulator) MF (class in molass_legacy.Decomposer.MF_Tutorial) MicrofluidicElution (class in molass_legacy.Microfluidics.MicrofluidicElution) midpoints() (in module molass_legacy.Saxs.SaxsSamples) mimimize() (SmoothFactorizer method) min_dist_inside() (in module molass_legacy.ATSAS.CorMapAnalysis) minima_callback() (BaselineOptimizer method) (BasicOptimizer method) (FixedBaselineOptimizer method) (StrategicOptimizer method) (UvBaselineEstimator method) MinimalTiff (class in molass_legacy.KekLib.MinimalTiff) minimize() (in module molass_legacy.KekLib.LmfitThreadSafe) (SimulatedAnnealing method), [1] (SmcSolver method) minimize_kpd() (AdvancedFrame method) minimize_lower_limit() (QrgLimitsAdjuster method) minimize_parameters() (PDB2MRC method), [1] minimize_rdr() (AdvancedFrame method) minimize_rho() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) minimize_rho_score() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) minimize_window() (JobStateCanvas method) MinimumSurface (class in molass_legacy.Microfluidics.MinimumSurface) mirrorImage() (in module molass_legacy.Stochastic.StationaryMove) MixedElutionModel (class in molass_legacy.Prob.MixedElutionModel) mixture (class in molass_legacy.LRF.regals) mkdirs_with_retry() (in module molass_legacy.KekLib.BasicUtils) MmAnimator (class in molass_legacy.Prob.MmAnimator) MockAnalyzer (class in molass_legacy.Prob.QmmMenu) MockAnalyzerDialog (class in molass_legacy.Mapping.MapperConstructor) MockCurve (class in molass_legacy.Prob.QmmMenu) MockEditor (class in molass_legacy.Batch.StandardProcedure) MockExecuter (class in molass_legacy.SerialAnalyzer.SerialTestUtils) MockMain (class in molass_legacy.Test.MockMain) MockSd (class in molass_legacy.Prob.QmmMenu) mode_tracer() (RdAnim method) Model (class in molass_legacy.Models.Tentative) (class in molass_legacy.Peaks.ModeledCurve) (class in molass_legacy.SerialAnalyzer.QuantileRegressionSklearn) model_curve() (UvCorrectorEgh method) model_debug_plot() (in module molass_legacy.Models.ModelUtils) model_name (EghMixture attribute) (EmgMixture attribute) model_plot() (in module molass_legacy.ModelParams.ModelDebugUtils) ModelCurve (class in molass_legacy.QuickAnalysis.PeakUtils) ModelData (class in molass_legacy.Theory.ModelData) ModelDecompInfo (class in molass_legacy.RangeEditors.DecompEditorFrame) ModeledCurve (class in molass_legacy.Peaks.ModeledCurve) ModeledData (class in molass_legacy.DataStructure.ModeledData) ModelEvaluator (class in molass_legacy.Decomposer.ModelEvaluator) ModelFrameStatus (class in molass_legacy.Selective.ModelFrameStatus) modelled_peaks_method() (MappingBatch method) ModelSelectFrame (class in molass_legacy.Selective.ModelSelectFrame) moderate_sigmas() (EghMixture method) (EmgMixture method) (GssMixture method) (SmbMixture method) modify_limits_using_moments() (AutoRestrictor method) modify_opt_params() (LaJudge method) modify_ranges_to_avoid_too_narrow_valley() (ElutionCurve method) modify_restart() (FullOptDialog method) modify_y() (ElutionDecomposer method) ModifyStateDialog (class in molass_legacy.Optimizer.ModifyStateDialog) module molass_legacy, [1], [2] molass_legacy.Alsaker molass_legacy.Alsaker.Compare molass_legacy.Alsaker.ComparisonPlot molass_legacy.ATSAS molass_legacy.ATSAS.AtsasUtils molass_legacy.ATSAS.AtsasVersion molass_legacy.ATSAS.AutoRg molass_legacy.ATSAS.AutorgRunner molass_legacy.ATSAS.CorMapAnalysis molass_legacy.ATSAS.Crysol molass_legacy.ATSAS.DatCmp molass_legacy.ATSAS.DatGnom molass_legacy.ATSAS.ExecCheck molass_legacy.AutorgKek molass_legacy.AutorgKek.AppVersion molass_legacy.AutorgKek.AtsasTools molass_legacy.AutorgKek.BiComponentSolver molass_legacy.AutorgKek.CommandLineOptions molass_legacy.AutorgKek.CommandMain molass_legacy.AutorgKek.CommandMainUtils molass_legacy.AutorgKek.DataModels molass_legacy.AutorgKek.DataModelsAgg molass_legacy.AutorgKek.DataModelsTripple molass_legacy.AutorgKek.ErrorResult molass_legacy.AutorgKek.Guinier molass_legacy.AutorgKek.GuinierInterval molass_legacy.AutorgKek.GuinierPorodFit molass_legacy.AutorgKek.HeadAnomalies molass_legacy.AutorgKek.IntensityData molass_legacy.AutorgKek.KekTools molass_legacy.AutorgKek.KekToolsGP molass_legacy.AutorgKek.LightObjects molass_legacy.AutorgKek.LinearModel molass_legacy.AutorgKek.LinRegSmoother molass_legacy.AutorgKek.ODR_WLS molass_legacy.AutorgKek.QrgLimitsAdjuster molass_legacy.AutorgKek.Quality molass_legacy.AutorgKek.Result molass_legacy.AutorgKek.ResultPrinter molass_legacy.AutorgKek.SAngler_WLS molass_legacy.AutorgKek.Settings molass_legacy.AutorgKek.SmoothSpline molass_legacy.AutorgKek.WLS_Basics molass_legacy.AutorgKek.WLS_Rg molass_legacy.Baseline molass_legacy.Baseline.BaseEstimater molass_legacy.Baseline.Baseline molass_legacy.Baseline.BaselineGuinier molass_legacy.Baseline.BaselineUtils molass_legacy.Baseline.BaseScattering molass_legacy.Baseline.BoBaseline molass_legacy.Baseline.BpaInspect molass_legacy.Baseline.Constants molass_legacy.Baseline.Convex molass_legacy.Baseline.FoulingBaseline molass_legacy.Baseline.Inspect molass_legacy.Baseline.IntegralBaseline molass_legacy.Baseline.LambertBeer molass_legacy.Baseline.LambertBeerProof molass_legacy.Baseline.LambertBeerTester molass_legacy.Baseline.LinearAdjustment molass_legacy.Baseline.LinearBaseline molass_legacy.Baseline.LpmInspect molass_legacy.Baseline.LpmInspect_for_paper molass_legacy.Baseline.PatchUtils molass_legacy.Baseline.ScatteringBaseline molass_legacy.Baseline.UvBaseCurve molass_legacy.Baseline.UvBaseline molass_legacy.Baseline.UvBaseSpline molass_legacy.Batch molass_legacy.Batch.BatchMappingImpl molass_legacy.Batch.BatchMappingUtils molass_legacy.Batch.BatchUtils molass_legacy.Batch.DataBridge molass_legacy.Batch.DataBridgeUtils molass_legacy.Batch.DataWalk molass_legacy.Batch.FullBatch molass_legacy.Batch.LiteBatch molass_legacy.Batch.OptDataSetsProxy molass_legacy.Batch.StandardProcedure molass_legacy.BoundedLRF molass_legacy.BoundedLRF.BoundedLrfSolver molass_legacy.BoundedLRF.ErrorCorrection molass_legacy.BoundedLRF.HardSphereDemo molass_legacy.BoundedLRF.NaiiveLrfSolver molass_legacy.CFSD molass_legacy.CFSD.SimpleDecomposeDemo molass_legacy.CharFunc molass_legacy.CharFunc.cf2DistFFT molass_legacy.CharFunc.CfDomainOptimizer molass_legacy.CharFunc.CfDomainStudy molass_legacy.CharFunc.PdfCfStudy molass_legacy.Conc molass_legacy.Conc.AqBqSimilarity molass_legacy.Conc.CdInspection molass_legacy.Conc.ConcDepend molass_legacy.Conc.RdAnim molass_legacy.Conc.SimData molass_legacy.DataStructure molass_legacy.DataStructure.AnalysisRangeInfo molass_legacy.DataStructure.BaseSurface molass_legacy.DataStructure.BaseSurfaceDemo molass_legacy.DataStructure.CrysolUtils molass_legacy.DataStructure.DataDebugger molass_legacy.DataStructure.EmgPeak molass_legacy.DataStructure.InputData molass_legacy.DataStructure.InputDataUtils molass_legacy.DataStructure.LPM molass_legacy.DataStructure.MatrixData molass_legacy.DataStructure.MdViewer molass_legacy.DataStructure.MeasuredData molass_legacy.DataStructure.ModeledData molass_legacy.DataStructure.PeakInfo molass_legacy.DataStructure.RangeInfo molass_legacy.DataStructure.RawData molass_legacy.DataStructure.ScatteringCurvePlotter molass_legacy.DataStructure.SvdDataSaver molass_legacy.DataStructure.SvdDenoise molass_legacy.DataStructure.SvdTutorial molass_legacy.DataStructure.SvdViewer molass_legacy.DataStructure.UvData molass_legacy.DataStructure.UvSpecCurve molass_legacy.DataStructure.XrayData molass_legacy.DataStructure.XrSpecCurve molass_legacy.Decomposer molass_legacy.Decomposer.ConvolutionDemo molass_legacy.Decomposer.DecompEditorDebug molass_legacy.Decomposer.DecompInfo molass_legacy.Decomposer.DecompUtils molass_legacy.Decomposer.DualEvaluator molass_legacy.Decomposer.DualOptimzer molass_legacy.Decomposer.ElutionDecomposer molass_legacy.Decomposer.ElutionMixtureModel molass_legacy.Decomposer.ElutionModelEditor molass_legacy.Decomposer.ElutionModelScaler molass_legacy.Decomposer.ErrorAnalysis molass_legacy.Decomposer.ExistingNmf molass_legacy.Decomposer.FactorAnalysis molass_legacy.Decomposer.FitRecord molass_legacy.Decomposer.ManualDecomposer molass_legacy.Decomposer.MatrixFactorization molass_legacy.Decomposer.MF_Tutorial molass_legacy.Decomposer.ModelEvaluator molass_legacy.Decomposer.OptRecsUtils molass_legacy.Decomposer.UnifiedDecompResult molass_legacy.Decomposer.UnifiedDecompResultTest molass_legacy.Decomposer.WlsDecomposer molass_legacy.DENSS molass_legacy.DENSS.denss molass_legacy.DENSS.denss.core molass_legacy.DENSS.denss.options molass_legacy.DENSS.denss.resources molass_legacy.DENSS.denss.resources.resources molass_legacy.DENSS.denss.scripts molass_legacy.DENSS.denss.scripts.denss_fit_data molass_legacy.DENSS.denss.scripts.denss_pdb2mrc molass_legacy.DENSS.DenssDriver molass_legacy.DENSS.DenssFitData molass_legacy.DENSS.DenssGui molass_legacy.DENSS.DenssManager molass_legacy.DENSS.DenssManagerDialog molass_legacy.DENSS.DenssUtils molass_legacy.DENSS.DmaxDependency molass_legacy.DENSS.DmaxEstimation molass_legacy.DENSS.resources molass_legacy.DENSS.resources.resources molass_legacy.DevelUtils molass_legacy.DevelUtils.FolderWalkers molass_legacy.DevelUtils.LegacyImporters molass_legacy.Distance molass_legacy.Distance.DeviationMeasure molass_legacy.Distance.FrobeniusXdiffmax molass_legacy.Distance.JensenShannon molass_legacy.Distance.NormalizedRmsd molass_legacy.DMM molass_legacy.DMM.discrete_rv molass_legacy.EFA molass_legacy.Elution molass_legacy.Elution.CurveUtils molass_legacy.Elution.Proportional molass_legacy.Env molass_legacy.Env.CheckEnvDialog molass_legacy.Env.EnvInfo molass_legacy.Env.EnvMessages molass_legacy.Env.GpuInfo molass_legacy.Error molass_legacy.Error.ErrorModel molass_legacy.Estimators molass_legacy.Estimators.BaseEstimator molass_legacy.Estimators.EdmEstimator molass_legacy.Estimators.EghEstimator molass_legacy.Estimators.FdEmgEstimator molass_legacy.Estimators.LjEghEstimator molass_legacy.Estimators.RtEmgEstimator molass_legacy.Estimators.SdmEstimator molass_legacy.Estimators.SdmEstimatorDebug molass_legacy.Estimators.SdmEstimatorImpl molass_legacy.Estimators.SdmEstimatorProxy molass_legacy.Estimators.StcEstimator molass_legacy.Estimators.TestTools molass_legacy.ExcelProcess molass_legacy.ExcelProcess.ExcelManager molass_legacy.ExcelProcess.ExcelTeller molass_legacy.Experiment molass_legacy.Experiment.ColumnTypeEstimator molass_legacy.Experiment.ColumnTypes molass_legacy.Experiment.DataUtils molass_legacy.Extrapolation molass_legacy.Extrapolation.AlmergeAnalyzer molass_legacy.Extrapolation.AutoRangeInspector molass_legacy.Extrapolation.ConcOptsDialog molass_legacy.Extrapolation.ConjugateGradientThreeD molass_legacy.Extrapolation.ExSolver molass_legacy.Extrapolation.ExtrapolationAnimation molass_legacy.Extrapolation.ExtrapolationControlPanel molass_legacy.Extrapolation.ExtrapolationDebugger molass_legacy.Extrapolation.ExtrapolationDenssMenu molass_legacy.Extrapolation.ExtrapolationProof molass_legacy.Extrapolation.ExtrapolationSolver molass_legacy.Extrapolation.ExtrapolSolverDialog molass_legacy.Extrapolation.KnownPeakPenalty molass_legacy.Extrapolation.KnownPeakPenaltyNumba molass_legacy.Extrapolation.MatrixFactorAlternate molass_legacy.Extrapolation.PeakSetSelector molass_legacy.Extrapolation.PreviewButtonFrame molass_legacy.Extrapolation.PreviewData molass_legacy.Extrapolation.PreviewResultSaver molass_legacy.Extrapolation.RangeInspector molass_legacy.Extrapolation.RankInspection molass_legacy.Extrapolation.ScatteringCurveViewer molass_legacy.Extrapolation.SmoothFactorizer molass_legacy.Extrapolation.SmoothnessPenalty molass_legacy.Extrapolation.SmoothnessPenaltyNumba molass_legacy.Extrapolation.WeightedLRF molass_legacy.Factors molass_legacy.Factors.PyChemLib molass_legacy.Factors.PyChemLib2D molass_legacy.Factors.PyChemLib3D molass_legacy.Global molass_legacy.Global.V2Init molass_legacy.Gmm molass_legacy.Gmm.FoleyGmm molass_legacy.Gmm.KPeaks molass_legacy.Gmm.MatsukenGmm molass_legacy.Gmm.MemAnnealing molass_legacy.Gmm.SingleGmm molass_legacy.Gmm.ZhiyaZuoGmm molass_legacy.GuinierAnalyzer molass_legacy.GuinierAnalyzer.AutorgKekAdapter molass_legacy.GuinierAnalyzer.GuinierDiffViewer molass_legacy.GuinierAnalyzer.GuinierViewer molass_legacy.GuinierAnalyzer.SimpleGuinier molass_legacy.GuinierAnalyzer.SimpleGuinierAnalyzer molass_legacy.GuinierAnalyzer.SimpleGuinierAnimation molass_legacy.GuinierAnalyzer.SimpleGuinierDemo molass_legacy.GuinierAnalyzer.SimpleGuinierGuiUtils molass_legacy.GuinierAnalyzer.SimpleGuinierScore molass_legacy.GuinierAnalyzer.SimpleGuinierScoreDialog molass_legacy.GuinierAnalyzer.SimpleGuinierTester molass_legacy.GuinierTools molass_legacy.GuinierTools.Alsaker2017 molass_legacy.GuinierTools.Alsaker2017_Test molass_legacy.GuinierTools.CompareGdevMeasures molass_legacy.GuinierTools.CpdDecompUtils molass_legacy.GuinierTools.GuinierDeviation molass_legacy.GuinierTools.GuinierDeviationTester molass_legacy.GuinierTools.RgComputer molass_legacy.GuinierTools.RgCurveDbMaker molass_legacy.GuinierTools.RgCurveUtils molass_legacy.GuiParts molass_legacy.GuiParts.ColumnTypeSelector molass_legacy.GuiParts.ConcFactorsEntry molass_legacy.GuiParts.FileInfoTable molass_legacy.GuiParts.NonAsciiPaths molass_legacy.GuiParts.UvFolderEntry molass_legacy.HdcTheory molass_legacy.HdcTheory.ElutionCurve molass_legacy.HdcTheory.LaminarFlow molass_legacy.HdcTheory.SpikeDemo molass_legacy.Hplc molass_legacy.ICIS molass_legacy.ICIS.IcisDemo molass_legacy.ICIS.XrayLrfConc molass_legacy.IFT molass_legacy.IFT.IftOptimizeImpl molass_legacy.InputProcess molass_legacy.InputProcess.FolderInfo molass_legacy.InputProcess.InputManager molass_legacy.InputProcess.InputTeller molass_legacy.Irregular molass_legacy.Irregular.Preprocess molass_legacy.Jupyter molass_legacy.Jupyter.Installer molass_legacy.Jupyter.JupyterLab molass_legacy.KDE molass_legacy.KekLib molass_legacy.KekLib.Affine molass_legacy.KekLib.ArgParser molass_legacy.KekLib.BasicUtils molass_legacy.KekLib.BraceWidgets molass_legacy.KekLib.CallStack molass_legacy.KekLib.Canvas3D molass_legacy.KekLib.CanvasDialog molass_legacy.KekLib.CanvasFrame molass_legacy.KekLib.ChangeableLogger molass_legacy.KekLib.CircleGeometry molass_legacy.KekLib.CleanerThread molass_legacy.KekLib.Console molass_legacy.KekLib.ContextUtils molass_legacy.KekLib.ControlKeyState molass_legacy.KekLib.CustomMessageBox molass_legacy.KekLib.DDList molass_legacy.KekLib.DebugCanvas molass_legacy.KekLib.DebugPlot molass_legacy.KekLib.DebugPlotUtils molass_legacy.KekLib.DebugUtils molass_legacy.KekLib.DiffUtils molass_legacy.KekLib.DisguinsingWidgets molass_legacy.KekLib.DpiAware molass_legacy.KekLib.DraggableArrow molass_legacy.KekLib.DraggableCurves molass_legacy.KekLib.DraggableListbox molass_legacy.KekLib.DynamicObjects molass_legacy.KekLib.EnvironCheck molass_legacy.KekLib.EvalUtils molass_legacy.KekLib.ExcelCOM molass_legacy.KekLib.ExcelLogChart molass_legacy.KekLib.ExceptionTracebacker molass_legacy.KekLib.FileTimeUtils molass_legacy.KekLib.GeometryUtils molass_legacy.KekLib.Gmail molass_legacy.KekLib.HookableMessageBox molass_legacy.KekLib.HtmlColorNames molass_legacy.KekLib.ImportUtils molass_legacy.KekLib.IntegrateUtils molass_legacy.KekLib.KillableThread molass_legacy.KekLib.KnownPaths molass_legacy.KekLib.LinkedToplevel molass_legacy.KekLib.ListingFrame molass_legacy.KekLib.LmfitThreadSafe molass_legacy.KekLib.LogDiff molass_legacy.KekLib.LogicalExpression molass_legacy.KekLib.MachineTypes molass_legacy.KekLib.MatplotlibUtils molass_legacy.KekLib.MenuButton molass_legacy.KekLib.MessageBoxUtils molass_legacy.KekLib.MinimalTiff molass_legacy.KekLib.MplAnnotate molass_legacy.KekLib.MplCanvas molass_legacy.KekLib.mplclofa molass_legacy.KekLib.MplUtils molass_legacy.KekLib.MultiMonitor molass_legacy.KekLib.NaturalSort molass_legacy.KekLib.NoseTools molass_legacy.KekLib.NoseUtils molass_legacy.KekLib.NumInverse molass_legacy.KekLib.NumpyArrayUtils molass_legacy.KekLib.NumpyUtils molass_legacy.KekLib.OnTheFlyUtils molass_legacy.KekLib.OpenPyXlUtil molass_legacy.KekLib.OpenPyXlUtils molass_legacy.KekLib.OurColorMaps molass_legacy.KekLib.OurCommonDialog molass_legacy.KekLib.OurCurvature molass_legacy.KekLib.OurException molass_legacy.KekLib.OurGeomdl molass_legacy.KekLib.OurGini molass_legacy.KekLib.OurGiniSOF molass_legacy.KekLib.OurImageIO molass_legacy.KekLib.OurImporter molass_legacy.KekLib.OurManim molass_legacy.KekLib.OurManim3D molass_legacy.KekLib.OurMatplotlib molass_legacy.KekLib.OurMatplotlib3D molass_legacy.KekLib.OurMessageBox molass_legacy.KekLib.OurMmap molass_legacy.KekLib.OurMock molass_legacy.KekLib.OurMultiprocessing molass_legacy.KekLib.OurNavigationToolbar molass_legacy.KekLib.OurPlotUtils molass_legacy.KekLib.OurProfiler molass_legacy.KekLib.OurScreenShot molass_legacy.KekLib.OurStatsModels molass_legacy.KekLib.OurSubprocess molass_legacy.KekLib.OurTk molass_legacy.KekLib.OurTkinter molass_legacy.KekLib.OurToplevel molass_legacy.KekLib.OurTtk molass_legacy.KekLib.PathUtils molass_legacy.KekLib.PersistentInfo molass_legacy.KekLib.PersistentPy molass_legacy.KekLib.PlotUtils molass_legacy.KekLib.PolygonGeometry molass_legacy.KekLib.Polynomial molass_legacy.KekLib.PopupMenuUtils molass_legacy.KekLib.ProgressInfo molass_legacy.KekLib.ProgressInfoDialog molass_legacy.KekLib.ProgressMinDialog molass_legacy.KekLib.ReadOnlyText molass_legacy.KekLib.RecentFolders molass_legacy.KekLib.RollingStats molass_legacy.KekLib.RunAsAdmin molass_legacy.KekLib.RunPython molass_legacy.KekLib.SaferSpinbox molass_legacy.KekLib.SciPyCookbook molass_legacy.KekLib.SciPyMisc molass_legacy.KekLib.ScipyUtils molass_legacy.KekLib.ScrolledFrame molass_legacy.KekLib.SharedArray molass_legacy.KekLib.SharedArrays molass_legacy.KekLib.SharedArrayTry molass_legacy.KekLib.Shutdown molass_legacy.KekLib.SimulatedAnnealing molass_legacy.KekLib.SingleInstance molass_legacy.KekLib.SliceUtils molass_legacy.KekLib.SplashScreen molass_legacy.KekLib.StdoutLogger molass_legacy.KekLib.StdoutRedirector molass_legacy.KekLib.SubProcess molass_legacy.KekLib.TestTkUtils molass_legacy.KekLib.TestUtils molass_legacy.KekLib.TextShowDialog molass_legacy.KekLib.ThreadUtils molass_legacy.KekLib.ThreeDimUtils molass_legacy.KekLib.TimeUtils molass_legacy.KekLib.TkAppInit molass_legacy.KekLib.TkCustomWidgets molass_legacy.KekLib.TkDebugDnd molass_legacy.KekLib.TkMiniTable molass_legacy.KekLib.TkMplUtils molass_legacy.KekLib.TkSizableWidgets molass_legacy.KekLib.TkSupplements molass_legacy.KekLib.TkTableWrapper molass_legacy.KekLib.TkTester molass_legacy.KekLib.TkUtils molass_legacy.KekLib.Unicode molass_legacy.KekLib.UpdateDailog molass_legacy.KekLib.VersionUtils molass_legacy.Kratky molass_legacy.Kratky.GuinierKratkyInfo molass_legacy.Kratky.GuinierKratkyPlots molass_legacy.LoaderProcess molass_legacy.LoaderProcess.DataLoader molass_legacy.LRF molass_legacy.LRF.ConcMatrix molass_legacy.LRF.ElutionMatrix molass_legacy.LRF.EoiiCorrector molass_legacy.LRF.LrfInfo molass_legacy.LRF.LrfInfoProxy molass_legacy.LRF.LrfResultPool molass_legacy.LRF.LrfRgUtils molass_legacy.LRF.LrfSolver molass_legacy.LRF.PnoScdMap molass_legacy.LRF.regals molass_legacy.LRF.RegalsDemo molass_legacy.LRF.SimultaneousLRF molass_legacy.LRF.UnknownConc molass_legacy.main molass_legacy.Mapping molass_legacy.Mapping.CurveSimilarity molass_legacy.Mapping.ElutionMapper molass_legacy.Mapping.ElutionMapperAdjuster molass_legacy.Mapping.ElutionMapperAnimator molass_legacy.Mapping.ElutionMapperCanvas molass_legacy.Mapping.ElutionMapperPlotter molass_legacy.Mapping.FewerPointMapper molass_legacy.Mapping.ManualAdjuster molass_legacy.Mapping.MapperConstructor molass_legacy.Mapping.MappingOptimizer molass_legacy.Mapping.MappingParams molass_legacy.Mapping.MappingUtils molass_legacy.Mapping.MappingV2Utils molass_legacy.Mapping.PeakCurve molass_legacy.Mapping.PeakMapper molass_legacy.Mapping.PeakMappingRefiner molass_legacy.Mapping.PeakMappingSolver molass_legacy.Mapping.ReducedCurve molass_legacy.Mapping.SimplestMapper molass_legacy.Mapping.SingleComponent molass_legacy.Mapping.SurveyUtils molass_legacy.MD molass_legacy.MD.code1 molass_legacy.MD.LjDemo molass_legacy.MD.NzDemo molass_legacy.Menus molass_legacy.Menus.GuiDenssTools molass_legacy.Menus.GuiDevelopment molass_legacy.Menus.GuiMctTools molass_legacy.Menus.GuiReferences molass_legacy.Menus.GuiSecTools molass_legacy.Menus.GuiSettings molass_legacy.Menus.GuiTutorials molass_legacy.Menus.JupyterMenu molass_legacy.Menus.V2Menu molass_legacy.Microfluidics molass_legacy.Microfluidics.AverageSubtractorDialog molass_legacy.Microfluidics.BackgroundMaker molass_legacy.Microfluidics.ConcNormalizer molass_legacy.Microfluidics.ConcNormalizerDialog molass_legacy.Microfluidics.DataSubtractor molass_legacy.Microfluidics.DelayAdjuster molass_legacy.Microfluidics.DelayOptimizer molass_legacy.Microfluidics.FlowSimulator molass_legacy.Microfluidics.IndividualSubtractorDialog molass_legacy.Microfluidics.InspectionInAngles molass_legacy.Microfluidics.MctRangeInfo molass_legacy.Microfluidics.MethodAdjusterFrame molass_legacy.Microfluidics.MethodFile molass_legacy.Microfluidics.MethodFileSimulator molass_legacy.Microfluidics.MicrofluidicElution molass_legacy.Microfluidics.MicrofluidicMapping molass_legacy.Microfluidics.MinimumSurface molass_legacy.Microfluidics.PreprocessDialog molass_legacy.Microfluidics.SimpleSolver molass_legacy.Microfluidics.SimpleTutorial molass_legacy.Microfluidics.SimpleUnfolding molass_legacy.Microfluidics.SubtractorFrame molass_legacy.Microfluidics.ThreeStateDimerSolver molass_legacy.Microfluidics.ThreeStateMonomerSolver molass_legacy.Microfluidics.TwoStateSolver molass_legacy.Microfluidics.UnfoldingModel molass_legacy.Microfluidics.UnfoldingTutorial molass_legacy.ModelParams molass_legacy.ModelParams.BaselineParams molass_legacy.ModelParams.BaseSliderInfo molass_legacy.ModelParams.BoundedSecParams molass_legacy.ModelParams.EdmParams molass_legacy.ModelParams.EdmParamsSheet molass_legacy.ModelParams.EdmPlotUtils molass_legacy.ModelParams.EdmSliderInfo molass_legacy.ModelParams.EghAdjuster molass_legacy.ModelParams.EghParams molass_legacy.ModelParams.EghParamsSheet molass_legacy.ModelParams.EghPlotUtils molass_legacy.ModelParams.FdEmgParamsSheet molass_legacy.ModelParams.LjEghParamsSheet molass_legacy.ModelParams.ModelDebugUtils molass_legacy.ModelParams.ParamSetUtils molass_legacy.ModelParams.ParamsSheetBase molass_legacy.ModelParams.RtEmgParamsSheet molass_legacy.ModelParams.SdmParams molass_legacy.ModelParams.SdmParamsSheet molass_legacy.ModelParams.SdmPlotUtils molass_legacy.ModelParams.SdmSliderInfo molass_legacy.ModelParams.SeccolFunctions molass_legacy.ModelParams.SimpleSecParams molass_legacy.ModelParams.StcAdjuster molass_legacy.ModelParams.StcParamsSheet molass_legacy.Models molass_legacy.Models.AffineContinuityDemo molass_legacy.Models.CfsEvalPeaks molass_legacy.Models.CfsEvalPeaksDemo molass_legacy.Models.Characteristic molass_legacy.Models.CharacteristicDemo molass_legacy.Models.EGH molass_legacy.Models.Egh2Emg molass_legacy.Models.ElutionCurveModels molass_legacy.Models.ElutionModelDemo molass_legacy.Models.ElutionModelUtils molass_legacy.Models.EMG molass_legacy.Models.HistoryDemo molass_legacy.Models.InvertibleSpline molass_legacy.Models.ModelUtils molass_legacy.Models.ModelUtilsException molass_legacy.Models.MomentFitting molass_legacy.Models.Proportional molass_legacy.Models.ProportionalDemo molass_legacy.Models.RateTheoryDemo molass_legacy.Models.Tentative molass_legacy.Models.TentativeDemo molass_legacy.MultiProc molass_legacy.MultiProc.Driver molass_legacy.MultiProc.Manager molass_legacy.MultiProc.ManagerDialog molass_legacy.MXD molass_legacy.ObjectiveFunctions molass_legacy.ObjectiveFunctions.G0346 molass_legacy.ObjectiveFunctions.G0525 molass_legacy.ObjectiveFunctions.G0665 molass_legacy.ObjectiveFunctions.G0705 molass_legacy.ObjectiveFunctions.G1100 molass_legacy.ObjectiveFunctions.G2010 molass_legacy.OnTheFly molass_legacy.OnTheFly.DebugDialog molass_legacy.OnTheFly.DebugImpl molass_legacy.Optimizer molass_legacy.Optimizer.AdhocFigure molass_legacy.Optimizer.AllParameters molass_legacy.Optimizer.AscDscDifference molass_legacy.Optimizer.Asymptotical molass_legacy.Optimizer.BackRunner molass_legacy.Optimizer.BaselineOptimizer molass_legacy.Optimizer.BasicOptimizer molass_legacy.Optimizer.BoundaryView molass_legacy.Optimizer.BoundsAnalysis molass_legacy.Optimizer.BoundsInspection molass_legacy.Optimizer.ColumnInterp molass_legacy.Optimizer.ColumnInterpGPU molass_legacy.Optimizer.ComplementaryView molass_legacy.Optimizer.CompositeInfo molass_legacy.Optimizer.DefaultNumPeaks molass_legacy.Optimizer.EghGradient molass_legacy.Optimizer.ElutionComposer molass_legacy.Optimizer.ElutionModelsGPU molass_legacy.Optimizer.FactorCurvePlot molass_legacy.Optimizer.FixedBaselineOptimizer molass_legacy.Optimizer.FullOptDialog molass_legacy.Optimizer.FullOptInput molass_legacy.Optimizer.FullOptResult molass_legacy.Optimizer.FullOptUtils molass_legacy.Optimizer.FuncImporter molass_legacy.Optimizer.FuncReloadUtils molass_legacy.Optimizer.FunctionChanger molass_legacy.Optimizer.FunctionDebugger molass_legacy.Optimizer.FunctionDebuggerUtils molass_legacy.Optimizer.FvScoreConverter molass_legacy.Optimizer.FvScoreDetails 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molass_legacy.Theory.SphericalFit molass_legacy.Theory.StructureFactor molass_legacy.Theory.Survey molass_legacy.Theory.SynthesizedLRF molass_legacy.Theory.TdGrant2022 molass_legacy.Theory.WLS molass_legacy.Tools molass_legacy.Tools.AutoExecManager molass_legacy.Tools.DebugCushion molass_legacy.Tools.DevTrial molass_legacy.Tools.ElutionCurvePicker molass_legacy.Tools.EmbedCushion molass_legacy.Tools.EmbedCushionUtils molass_legacy.Tools.EmbedDialog molass_legacy.Tools.LogChecker molass_legacy.Tools.MapperSingleton molass_legacy.Tools.OutlineViewer molass_legacy.Tools.SdUtils molass_legacy.Tools.SimpleThreedView molass_legacy.Tools.SpotDebugger molass_legacy.Tools.ThreeDimViewer molass_legacy.Trials molass_legacy.Trials.BoundedLRF molass_legacy.Trials.BoundedLRF.IterativeLrfSolver molass_legacy.Trials.BoundedLRF.IterativeLrfSolverDemo molass_legacy.Trimming molass_legacy.Trimming.AutoRestrictor molass_legacy.Trimming.AutoRestrictorProxy molass_legacy.Trimming.CdLimit molass_legacy.Trimming.CustomSigmoid molass_legacy.Trimming.DataRange molass_legacy.Trimming.DataRangeTestUtils molass_legacy.Trimming.DiniSigmoid molass_legacy.Trimming.EndingAnomaly molass_legacy.Trimming.FlangeLimit molass_legacy.Trimming.FlowChange molass_legacy.Trimming.FlowChangeCandidates molass_legacy.Trimming.FlowChangePrep molass_legacy.Trimming.FlowChangeTestUtils molass_legacy.Trimming.FlowChangeUtils molass_legacy.Trimming.GradualRegionAnalysis molass_legacy.Trimming.GuinierLimit molass_legacy.Trimming.GuinierRegion molass_legacy.Trimming.MatchingPeaks molass_legacy.Trimming.MomentTrimming molass_legacy.Trimming.OptimalTrimming molass_legacy.Trimming.OptViewRange molass_legacy.Trimming.OutlineFigure molass_legacy.Trimming.OutlineFigureSaver molass_legacy.Trimming.PeakRegion molass_legacy.Trimming.PeakRegionTestUtils molass_legacy.Trimming.PreliminaryRecognition molass_legacy.Trimming.PreliminaryRg molass_legacy.Trimming.Sigmoid molass_legacy.Trimming.SigmoidApplicability molass_legacy.Trimming.SigmoidChain molass_legacy.Trimming.SigmoidDemo molass_legacy.Trimming.SigmoidGuessX0 molass_legacy.Trimming.SpecialSigmoid molass_legacy.Trimming.TrimmingDebugDnd molass_legacy.Trimming.TrimmingDebugUtils molass_legacy.Trimming.TrimmingInfo molass_legacy.Trimming.TrimmingInspection molass_legacy.Trimming.TrimmingResult molass_legacy.Trimming.TrimmingUtils molass_legacy.Trimming.UvBaseSolver molass_legacy.Trimming.UvBaseSolverInfo molass_legacy.Trimming.UvCorrector molass_legacy.Trimming.UvCorrectorEgh molass_legacy.Trimming.UvCorrectorIllust molass_legacy.Trimming.UvCorrectorSpline molass_legacy.Trimming.UvCorrectorTestUtils molass_legacy.Trimming.UvDiffEffects molass_legacy.Tutorials molass_legacy.Tutorials.DualSpace molass_legacy.Tutorials.LinearEquations molass_legacy.Tutorials.LinTranAnim molass_legacy.Tutorials.LPM molass_legacy.Tutorials.MpInverseAnim molass_legacy.Tutorials.MpInverseAnim3D molass_legacy.Tutorials.MpInverseBasic molass_legacy.Tutorials.SvdAnimation molass_legacy.Tutorials.VoxelFFT molass_legacy.Tutorials.VoxelUtils molass_legacy.UV molass_legacy.UV.Absorbance molass_legacy.UV.AbsorbancePlot molass_legacy.UV.AbsorbanceSaveDialog molass_legacy.UV.AbsorbanceViewer molass_legacy.UV.AbsorbanceViewerPub molass_legacy.UV.AbsorbanceViewUtils molass_legacy.UV.Foldedness molass_legacy.UV.FoldednessDemo molass_legacy.UV.LrfMappingDemo molass_legacy.UV.PlainCurve molass_legacy.UV.PlainCurveUtils molass_legacy.UV.Spike molass_legacy.UV.UvPreRecog molass_legacy.UV.WYF_Ratios molass_legacy.UV.WYF_RatiosPlot molass_legacy.UV.WYF_RatiosSurvey molass_legacy.UV.XrayProportional molass_legacy.V2PropOptimizer molass_legacy.V2PropOptimizer.PropOptimizer molass_legacy.V2PropOptimizer.PropOptimizerDialogs molass_legacy.V2PropOptimizer.PropOptimizerEGH molass_legacy.V2PropOptimizer.PropOptimizerSTC molass_legacy.V2PropOptimizer.PropOptimizerUtils molass_legacy.V2PropOptimizer.PropOptMenu molass_legacy.V2PropOptimizer.RdrChart molass_legacy.V2PropOptimizer.V1PreviewAdapter molass_legacy.V2PropOptimizer.V1RangeCoverter molass_legacy.V2PropOptimizer.VariedPropAnalysis molass_legacy.Wave molass_legacy.Wave.Beam molass_legacy.Wave.Circle molass_legacy.Wave.dynamic_image2 molass_legacy.Wave.Euler molass_legacy.Wave.Scattering1 molass_legacy.Wave.Scattering2 molass_legacy.Wave.ScatteringN molass_gui() (in module molass_legacy.main) molass_legacy module, [1], [2] molass_legacy.Alsaker module molass_legacy.Alsaker.Compare module molass_legacy.Alsaker.ComparisonPlot module molass_legacy.ATSAS module molass_legacy.ATSAS.AtsasUtils module molass_legacy.ATSAS.AtsasVersion module molass_legacy.ATSAS.AutoRg module molass_legacy.ATSAS.AutorgRunner module molass_legacy.ATSAS.CorMapAnalysis module molass_legacy.ATSAS.Crysol module molass_legacy.ATSAS.DatCmp module molass_legacy.ATSAS.DatGnom module molass_legacy.ATSAS.ExecCheck module molass_legacy.AutorgKek module molass_legacy.AutorgKek.AppVersion module molass_legacy.AutorgKek.AtsasTools module molass_legacy.AutorgKek.BiComponentSolver module molass_legacy.AutorgKek.CommandLineOptions module molass_legacy.AutorgKek.CommandMain module molass_legacy.AutorgKek.CommandMainUtils module molass_legacy.AutorgKek.DataModels module molass_legacy.AutorgKek.DataModelsAgg module molass_legacy.AutorgKek.DataModelsTripple module molass_legacy.AutorgKek.ErrorResult module molass_legacy.AutorgKek.Guinier module molass_legacy.AutorgKek.GuinierInterval module molass_legacy.AutorgKek.GuinierPorodFit module molass_legacy.AutorgKek.HeadAnomalies module molass_legacy.AutorgKek.IntensityData module molass_legacy.AutorgKek.KekTools module molass_legacy.AutorgKek.KekToolsGP module molass_legacy.AutorgKek.LightObjects module molass_legacy.AutorgKek.LinearModel module molass_legacy.AutorgKek.LinRegSmoother module molass_legacy.AutorgKek.ODR_WLS module molass_legacy.AutorgKek.QrgLimitsAdjuster module molass_legacy.AutorgKek.Quality module molass_legacy.AutorgKek.Result module molass_legacy.AutorgKek.ResultPrinter module molass_legacy.AutorgKek.SAngler_WLS module molass_legacy.AutorgKek.Settings module molass_legacy.AutorgKek.SmoothSpline module molass_legacy.AutorgKek.WLS_Basics module molass_legacy.AutorgKek.WLS_Rg module molass_legacy.Baseline module molass_legacy.Baseline.BaseEstimater module molass_legacy.Baseline.Baseline module molass_legacy.Baseline.BaselineGuinier module molass_legacy.Baseline.BaselineUtils module molass_legacy.Baseline.BaseScattering module molass_legacy.Baseline.BoBaseline module molass_legacy.Baseline.BpaInspect module molass_legacy.Baseline.Constants module molass_legacy.Baseline.Convex module molass_legacy.Baseline.FoulingBaseline module molass_legacy.Baseline.Inspect module molass_legacy.Baseline.IntegralBaseline module molass_legacy.Baseline.LambertBeer module molass_legacy.Baseline.LambertBeerProof module molass_legacy.Baseline.LambertBeerTester module molass_legacy.Baseline.LinearAdjustment module molass_legacy.Baseline.LinearBaseline module molass_legacy.Baseline.LpmInspect module molass_legacy.Baseline.LpmInspect_for_paper module molass_legacy.Baseline.PatchUtils module molass_legacy.Baseline.ScatteringBaseline module molass_legacy.Baseline.UvBaseCurve module molass_legacy.Baseline.UvBaseline module molass_legacy.Baseline.UvBaseSpline module molass_legacy.Batch module molass_legacy.Batch.BatchMappingImpl module molass_legacy.Batch.BatchMappingUtils module molass_legacy.Batch.BatchUtils module molass_legacy.Batch.DataBridge module molass_legacy.Batch.DataBridgeUtils module molass_legacy.Batch.DataWalk module molass_legacy.Batch.FullBatch module molass_legacy.Batch.LiteBatch module molass_legacy.Batch.OptDataSetsProxy module molass_legacy.Batch.StandardProcedure module molass_legacy.BoundedLRF module molass_legacy.BoundedLRF.BoundedLrfSolver module molass_legacy.BoundedLRF.ErrorCorrection module molass_legacy.BoundedLRF.HardSphereDemo module molass_legacy.BoundedLRF.NaiiveLrfSolver module molass_legacy.CFSD module molass_legacy.CFSD.SimpleDecomposeDemo module molass_legacy.CharFunc module molass_legacy.CharFunc.cf2DistFFT module molass_legacy.CharFunc.CfDomainOptimizer module molass_legacy.CharFunc.CfDomainStudy module molass_legacy.CharFunc.PdfCfStudy module molass_legacy.Conc module molass_legacy.Conc.AqBqSimilarity module molass_legacy.Conc.CdInspection module molass_legacy.Conc.ConcDepend module molass_legacy.Conc.RdAnim module molass_legacy.Conc.SimData module molass_legacy.DataStructure module molass_legacy.DataStructure.AnalysisRangeInfo module molass_legacy.DataStructure.BaseSurface module molass_legacy.DataStructure.BaseSurfaceDemo module molass_legacy.DataStructure.CrysolUtils module molass_legacy.DataStructure.DataDebugger module molass_legacy.DataStructure.EmgPeak module molass_legacy.DataStructure.InputData module molass_legacy.DataStructure.InputDataUtils module molass_legacy.DataStructure.LPM module molass_legacy.DataStructure.MatrixData module molass_legacy.DataStructure.MdViewer module molass_legacy.DataStructure.MeasuredData module molass_legacy.DataStructure.ModeledData module molass_legacy.DataStructure.PeakInfo module molass_legacy.DataStructure.RangeInfo module molass_legacy.DataStructure.RawData module molass_legacy.DataStructure.ScatteringCurvePlotter module molass_legacy.DataStructure.SvdDataSaver module molass_legacy.DataStructure.SvdDenoise module molass_legacy.DataStructure.SvdTutorial module molass_legacy.DataStructure.SvdViewer module molass_legacy.DataStructure.UvData module molass_legacy.DataStructure.UvSpecCurve module molass_legacy.DataStructure.XrayData module molass_legacy.DataStructure.XrSpecCurve module molass_legacy.Decomposer module molass_legacy.Decomposer.ConvolutionDemo module molass_legacy.Decomposer.DecompEditorDebug module molass_legacy.Decomposer.DecompInfo module molass_legacy.Decomposer.DecompUtils module molass_legacy.Decomposer.DualEvaluator module molass_legacy.Decomposer.DualOptimzer module molass_legacy.Decomposer.ElutionDecomposer module molass_legacy.Decomposer.ElutionMixtureModel module molass_legacy.Decomposer.ElutionModelEditor module molass_legacy.Decomposer.ElutionModelScaler module molass_legacy.Decomposer.ErrorAnalysis module molass_legacy.Decomposer.ExistingNmf module molass_legacy.Decomposer.FactorAnalysis module molass_legacy.Decomposer.FitRecord module molass_legacy.Decomposer.ManualDecomposer module molass_legacy.Decomposer.MatrixFactorization module molass_legacy.Decomposer.MF_Tutorial module molass_legacy.Decomposer.ModelEvaluator module molass_legacy.Decomposer.OptRecsUtils module molass_legacy.Decomposer.UnifiedDecompResult module molass_legacy.Decomposer.UnifiedDecompResultTest module molass_legacy.Decomposer.WlsDecomposer module molass_legacy.DENSS module molass_legacy.DENSS.denss module molass_legacy.DENSS.denss.core module molass_legacy.DENSS.denss.options module molass_legacy.DENSS.denss.resources module molass_legacy.DENSS.denss.resources.resources module molass_legacy.DENSS.denss.scripts module molass_legacy.DENSS.denss.scripts.denss_fit_data module molass_legacy.DENSS.denss.scripts.denss_pdb2mrc module molass_legacy.DENSS.DenssDriver module molass_legacy.DENSS.DenssFitData module molass_legacy.DENSS.DenssGui module molass_legacy.DENSS.DenssManager module molass_legacy.DENSS.DenssManagerDialog module molass_legacy.DENSS.DenssUtils module molass_legacy.DENSS.DmaxDependency module molass_legacy.DENSS.DmaxEstimation module molass_legacy.DENSS.resources module molass_legacy.DENSS.resources.resources module molass_legacy.DevelUtils module molass_legacy.DevelUtils.FolderWalkers module molass_legacy.DevelUtils.LegacyImporters module molass_legacy.Distance module molass_legacy.Distance.DeviationMeasure module molass_legacy.Distance.FrobeniusXdiffmax module molass_legacy.Distance.JensenShannon module molass_legacy.Distance.NormalizedRmsd module molass_legacy.DMM module molass_legacy.DMM.discrete_rv module molass_legacy.EFA module molass_legacy.Elution module molass_legacy.Elution.CurveUtils module molass_legacy.Elution.Proportional module molass_legacy.Env module molass_legacy.Env.CheckEnvDialog module molass_legacy.Env.EnvInfo module molass_legacy.Env.EnvMessages module molass_legacy.Env.GpuInfo module molass_legacy.Error module molass_legacy.Error.ErrorModel module molass_legacy.Estimators module molass_legacy.Estimators.BaseEstimator module molass_legacy.Estimators.EdmEstimator module molass_legacy.Estimators.EghEstimator module molass_legacy.Estimators.FdEmgEstimator module molass_legacy.Estimators.LjEghEstimator module molass_legacy.Estimators.RtEmgEstimator module molass_legacy.Estimators.SdmEstimator module molass_legacy.Estimators.SdmEstimatorDebug module molass_legacy.Estimators.SdmEstimatorImpl module molass_legacy.Estimators.SdmEstimatorProxy module molass_legacy.Estimators.StcEstimator module molass_legacy.Estimators.TestTools module molass_legacy.ExcelProcess module molass_legacy.ExcelProcess.ExcelManager module molass_legacy.ExcelProcess.ExcelTeller module molass_legacy.Experiment module molass_legacy.Experiment.ColumnTypeEstimator module molass_legacy.Experiment.ColumnTypes module molass_legacy.Experiment.DataUtils module molass_legacy.Extrapolation module molass_legacy.Extrapolation.AlmergeAnalyzer module molass_legacy.Extrapolation.AutoRangeInspector module molass_legacy.Extrapolation.ConcOptsDialog module molass_legacy.Extrapolation.ConjugateGradientThreeD module molass_legacy.Extrapolation.ExSolver module molass_legacy.Extrapolation.ExtrapolationAnimation module molass_legacy.Extrapolation.ExtrapolationControlPanel module molass_legacy.Extrapolation.ExtrapolationDebugger module molass_legacy.Extrapolation.ExtrapolationDenssMenu module molass_legacy.Extrapolation.ExtrapolationProof module molass_legacy.Extrapolation.ExtrapolationSolver module molass_legacy.Extrapolation.ExtrapolSolverDialog module molass_legacy.Extrapolation.KnownPeakPenalty module molass_legacy.Extrapolation.KnownPeakPenaltyNumba module molass_legacy.Extrapolation.MatrixFactorAlternate module molass_legacy.Extrapolation.PeakSetSelector module molass_legacy.Extrapolation.PreviewButtonFrame module molass_legacy.Extrapolation.PreviewData module molass_legacy.Extrapolation.PreviewResultSaver module molass_legacy.Extrapolation.RangeInspector module molass_legacy.Extrapolation.RankInspection module molass_legacy.Extrapolation.ScatteringCurveViewer module molass_legacy.Extrapolation.SmoothFactorizer module molass_legacy.Extrapolation.SmoothnessPenalty module molass_legacy.Extrapolation.SmoothnessPenaltyNumba module molass_legacy.Extrapolation.WeightedLRF module molass_legacy.Factors module molass_legacy.Factors.PyChemLib module molass_legacy.Factors.PyChemLib2D module molass_legacy.Factors.PyChemLib3D module molass_legacy.Global module molass_legacy.Global.V2Init module molass_legacy.Gmm module molass_legacy.Gmm.FoleyGmm module molass_legacy.Gmm.KPeaks module molass_legacy.Gmm.MatsukenGmm module molass_legacy.Gmm.MemAnnealing module molass_legacy.Gmm.SingleGmm module molass_legacy.Gmm.ZhiyaZuoGmm module molass_legacy.GuinierAnalyzer module molass_legacy.GuinierAnalyzer.AutorgKekAdapter module molass_legacy.GuinierAnalyzer.GuinierDiffViewer module molass_legacy.GuinierAnalyzer.GuinierViewer module molass_legacy.GuinierAnalyzer.SimpleGuinier module molass_legacy.GuinierAnalyzer.SimpleGuinierAnalyzer module molass_legacy.GuinierAnalyzer.SimpleGuinierAnimation module molass_legacy.GuinierAnalyzer.SimpleGuinierDemo module molass_legacy.GuinierAnalyzer.SimpleGuinierGuiUtils module molass_legacy.GuinierAnalyzer.SimpleGuinierScore module molass_legacy.GuinierAnalyzer.SimpleGuinierScoreDialog module molass_legacy.GuinierAnalyzer.SimpleGuinierTester module molass_legacy.GuinierTools module molass_legacy.GuinierTools.Alsaker2017 module

molass_legacy.GuinierTools.Alsaker2017_Test module molass_legacy.GuinierTools.CompareGdevMeasures module molass_legacy.GuinierTools.CpdDecompUtils module molass_legacy.GuinierTools.GuinierDeviation module molass_legacy.GuinierTools.GuinierDeviationTester module molass_legacy.GuinierTools.RgComputer module molass_legacy.GuinierTools.RgCurveDbMaker module molass_legacy.GuinierTools.RgCurveUtils module molass_legacy.GuiParts module molass_legacy.GuiParts.ColumnTypeSelector module molass_legacy.GuiParts.ConcFactorsEntry module molass_legacy.GuiParts.FileInfoTable module molass_legacy.GuiParts.NonAsciiPaths module molass_legacy.GuiParts.UvFolderEntry module molass_legacy.HdcTheory module molass_legacy.HdcTheory.ElutionCurve module molass_legacy.HdcTheory.LaminarFlow module molass_legacy.HdcTheory.SpikeDemo module molass_legacy.Hplc module molass_legacy.ICIS module molass_legacy.ICIS.IcisDemo module molass_legacy.ICIS.XrayLrfConc module molass_legacy.IFT module molass_legacy.IFT.IftOptimizeImpl module molass_legacy.InputProcess module molass_legacy.InputProcess.FolderInfo module molass_legacy.InputProcess.InputManager module molass_legacy.InputProcess.InputTeller module molass_legacy.Irregular module molass_legacy.Irregular.Preprocess module molass_legacy.Jupyter module molass_legacy.Jupyter.Installer module molass_legacy.Jupyter.JupyterLab module molass_legacy.KDE module molass_legacy.KekLib module molass_legacy.KekLib.Affine module molass_legacy.KekLib.ArgParser module molass_legacy.KekLib.BasicUtils module molass_legacy.KekLib.BraceWidgets module molass_legacy.KekLib.CallStack module molass_legacy.KekLib.Canvas3D module molass_legacy.KekLib.CanvasDialog module molass_legacy.KekLib.CanvasFrame module molass_legacy.KekLib.ChangeableLogger module molass_legacy.KekLib.CircleGeometry module molass_legacy.KekLib.CleanerThread module molass_legacy.KekLib.Console module molass_legacy.KekLib.ContextUtils module molass_legacy.KekLib.ControlKeyState module molass_legacy.KekLib.CustomMessageBox module molass_legacy.KekLib.DDList module molass_legacy.KekLib.DebugCanvas module molass_legacy.KekLib.DebugPlot module molass_legacy.KekLib.DebugPlotUtils module molass_legacy.KekLib.DebugUtils module molass_legacy.KekLib.DiffUtils module molass_legacy.KekLib.DisguinsingWidgets module molass_legacy.KekLib.DpiAware module molass_legacy.KekLib.DraggableArrow module molass_legacy.KekLib.DraggableCurves module molass_legacy.KekLib.DraggableListbox module molass_legacy.KekLib.DynamicObjects module molass_legacy.KekLib.EnvironCheck module molass_legacy.KekLib.EvalUtils module molass_legacy.KekLib.ExcelCOM module molass_legacy.KekLib.ExcelLogChart module molass_legacy.KekLib.ExceptionTracebacker module molass_legacy.KekLib.FileTimeUtils module molass_legacy.KekLib.GeometryUtils module molass_legacy.KekLib.Gmail module molass_legacy.KekLib.HookableMessageBox module molass_legacy.KekLib.HtmlColorNames module molass_legacy.KekLib.ImportUtils module molass_legacy.KekLib.IntegrateUtils module molass_legacy.KekLib.KillableThread module molass_legacy.KekLib.KnownPaths module molass_legacy.KekLib.LinkedToplevel module molass_legacy.KekLib.ListingFrame module molass_legacy.KekLib.LmfitThreadSafe module molass_legacy.KekLib.LogDiff module molass_legacy.KekLib.LogicalExpression module molass_legacy.KekLib.MachineTypes module molass_legacy.KekLib.MatplotlibUtils module molass_legacy.KekLib.MenuButton module molass_legacy.KekLib.MessageBoxUtils module molass_legacy.KekLib.MinimalTiff module molass_legacy.KekLib.MplAnnotate module molass_legacy.KekLib.MplCanvas module molass_legacy.KekLib.mplclofa module molass_legacy.KekLib.MplUtils module molass_legacy.KekLib.MultiMonitor module molass_legacy.KekLib.NaturalSort module molass_legacy.KekLib.NoseTools module molass_legacy.KekLib.NoseUtils module molass_legacy.KekLib.NumInverse module molass_legacy.KekLib.NumpyArrayUtils module molass_legacy.KekLib.NumpyUtils module molass_legacy.KekLib.OnTheFlyUtils module molass_legacy.KekLib.OpenPyXlUtil module molass_legacy.KekLib.OpenPyXlUtils module molass_legacy.KekLib.OurColorMaps module molass_legacy.KekLib.OurCommonDialog module molass_legacy.KekLib.OurCurvature module molass_legacy.KekLib.OurException module molass_legacy.KekLib.OurGeomdl module molass_legacy.KekLib.OurGini module molass_legacy.KekLib.OurGiniSOF module molass_legacy.KekLib.OurImageIO module molass_legacy.KekLib.OurImporter module molass_legacy.KekLib.OurManim module molass_legacy.KekLib.OurManim3D module molass_legacy.KekLib.OurMatplotlib module molass_legacy.KekLib.OurMatplotlib3D module molass_legacy.KekLib.OurMessageBox module molass_legacy.KekLib.OurMmap module molass_legacy.KekLib.OurMock module molass_legacy.KekLib.OurMultiprocessing module molass_legacy.KekLib.OurNavigationToolbar module molass_legacy.KekLib.OurPlotUtils module molass_legacy.KekLib.OurProfiler module molass_legacy.KekLib.OurScreenShot module molass_legacy.KekLib.OurStatsModels module molass_legacy.KekLib.OurSubprocess module molass_legacy.KekLib.OurTk module molass_legacy.KekLib.OurTkinter module molass_legacy.KekLib.OurToplevel module molass_legacy.KekLib.OurTtk module molass_legacy.KekLib.PathUtils module molass_legacy.KekLib.PersistentInfo module molass_legacy.KekLib.PersistentPy module molass_legacy.KekLib.PlotUtils module molass_legacy.KekLib.PolygonGeometry module molass_legacy.KekLib.Polynomial module molass_legacy.KekLib.PopupMenuUtils module molass_legacy.KekLib.ProgressInfo module molass_legacy.KekLib.ProgressInfoDialog module molass_legacy.KekLib.ProgressMinDialog module molass_legacy.KekLib.ReadOnlyText module molass_legacy.KekLib.RecentFolders module molass_legacy.KekLib.RollingStats module molass_legacy.KekLib.RunAsAdmin module molass_legacy.KekLib.RunPython module molass_legacy.KekLib.SaferSpinbox module molass_legacy.KekLib.SciPyCookbook module molass_legacy.KekLib.SciPyMisc module molass_legacy.KekLib.ScipyUtils module molass_legacy.KekLib.ScrolledFrame module molass_legacy.KekLib.SharedArray module molass_legacy.KekLib.SharedArrays module molass_legacy.KekLib.SharedArrayTry module molass_legacy.KekLib.Shutdown module molass_legacy.KekLib.SimulatedAnnealing module molass_legacy.KekLib.SingleInstance module molass_legacy.KekLib.SliceUtils module molass_legacy.KekLib.SplashScreen module molass_legacy.KekLib.StdoutLogger module molass_legacy.KekLib.StdoutRedirector module molass_legacy.KekLib.SubProcess module molass_legacy.KekLib.TestTkUtils module molass_legacy.KekLib.TestUtils module molass_legacy.KekLib.TextShowDialog module molass_legacy.KekLib.ThreadUtils module molass_legacy.KekLib.ThreeDimUtils module molass_legacy.KekLib.TimeUtils module molass_legacy.KekLib.TkAppInit module molass_legacy.KekLib.TkCustomWidgets module molass_legacy.KekLib.TkDebugDnd module molass_legacy.KekLib.TkMiniTable module molass_legacy.KekLib.TkMplUtils module molass_legacy.KekLib.TkSizableWidgets module molass_legacy.KekLib.TkSupplements module molass_legacy.KekLib.TkTableWrapper module molass_legacy.KekLib.TkTester module molass_legacy.KekLib.TkUtils module molass_legacy.KekLib.Unicode module molass_legacy.KekLib.UpdateDailog module molass_legacy.KekLib.VersionUtils module molass_legacy.Kratky module molass_legacy.Kratky.GuinierKratkyInfo module molass_legacy.Kratky.GuinierKratkyPlots module molass_legacy.LoaderProcess module molass_legacy.LoaderProcess.DataLoader module molass_legacy.LRF module molass_legacy.LRF.ConcMatrix module molass_legacy.LRF.ElutionMatrix module molass_legacy.LRF.EoiiCorrector module molass_legacy.LRF.LrfInfo module molass_legacy.LRF.LrfInfoProxy module molass_legacy.LRF.LrfResultPool module molass_legacy.LRF.LrfRgUtils module molass_legacy.LRF.LrfSolver module molass_legacy.LRF.PnoScdMap module molass_legacy.LRF.regals module molass_legacy.LRF.RegalsDemo module molass_legacy.LRF.SimultaneousLRF module molass_legacy.LRF.UnknownConc module molass_legacy.main module molass_legacy.Mapping module molass_legacy.Mapping.CurveSimilarity module molass_legacy.Mapping.ElutionMapper module molass_legacy.Mapping.ElutionMapperAdjuster module molass_legacy.Mapping.ElutionMapperAnimator module molass_legacy.Mapping.ElutionMapperCanvas module molass_legacy.Mapping.ElutionMapperPlotter module molass_legacy.Mapping.FewerPointMapper module molass_legacy.Mapping.ManualAdjuster module molass_legacy.Mapping.MapperConstructor module molass_legacy.Mapping.MappingOptimizer module molass_legacy.Mapping.MappingParams module molass_legacy.Mapping.MappingUtils module molass_legacy.Mapping.MappingV2Utils module molass_legacy.Mapping.PeakCurve module molass_legacy.Mapping.PeakMapper module molass_legacy.Mapping.PeakMappingRefiner module molass_legacy.Mapping.PeakMappingSolver module molass_legacy.Mapping.ReducedCurve module molass_legacy.Mapping.SimplestMapper module molass_legacy.Mapping.SingleComponent module molass_legacy.Mapping.SurveyUtils module molass_legacy.MD module molass_legacy.MD.code1 module molass_legacy.MD.LjDemo module molass_legacy.MD.NzDemo module molass_legacy.Menus module molass_legacy.Menus.GuiDenssTools module molass_legacy.Menus.GuiDevelopment module molass_legacy.Menus.GuiMctTools module molass_legacy.Menus.GuiReferences module molass_legacy.Menus.GuiSecTools module molass_legacy.Menus.GuiSettings module molass_legacy.Menus.GuiTutorials module molass_legacy.Menus.JupyterMenu module molass_legacy.Menus.V2Menu module molass_legacy.Microfluidics module molass_legacy.Microfluidics.AverageSubtractorDialog module molass_legacy.Microfluidics.BackgroundMaker module molass_legacy.Microfluidics.ConcNormalizer module molass_legacy.Microfluidics.ConcNormalizerDialog module molass_legacy.Microfluidics.DataSubtractor module molass_legacy.Microfluidics.DelayAdjuster module molass_legacy.Microfluidics.DelayOptimizer module molass_legacy.Microfluidics.FlowSimulator module molass_legacy.Microfluidics.IndividualSubtractorDialog module molass_legacy.Microfluidics.InspectionInAngles module molass_legacy.Microfluidics.MctRangeInfo module molass_legacy.Microfluidics.MethodAdjusterFrame module molass_legacy.Microfluidics.MethodFile module molass_legacy.Microfluidics.MethodFileSimulator module molass_legacy.Microfluidics.MicrofluidicElution module molass_legacy.Microfluidics.MicrofluidicMapping module molass_legacy.Microfluidics.MinimumSurface module molass_legacy.Microfluidics.PreprocessDialog module molass_legacy.Microfluidics.SimpleSolver module molass_legacy.Microfluidics.SimpleTutorial module molass_legacy.Microfluidics.SimpleUnfolding module molass_legacy.Microfluidics.SubtractorFrame module molass_legacy.Microfluidics.ThreeStateDimerSolver module molass_legacy.Microfluidics.ThreeStateMonomerSolver module molass_legacy.Microfluidics.TwoStateSolver module molass_legacy.Microfluidics.UnfoldingModel module molass_legacy.Microfluidics.UnfoldingTutorial module molass_legacy.ModelParams module molass_legacy.ModelParams.BaselineParams module molass_legacy.ModelParams.BaseSliderInfo module molass_legacy.ModelParams.BoundedSecParams module molass_legacy.ModelParams.EdmParams module molass_legacy.ModelParams.EdmParamsSheet module molass_legacy.ModelParams.EdmPlotUtils module molass_legacy.ModelParams.EdmSliderInfo module molass_legacy.ModelParams.EghAdjuster module molass_legacy.ModelParams.EghParams module molass_legacy.ModelParams.EghParamsSheet module molass_legacy.ModelParams.EghPlotUtils module molass_legacy.ModelParams.FdEmgParamsSheet module molass_legacy.ModelParams.LjEghParamsSheet module molass_legacy.ModelParams.ModelDebugUtils module molass_legacy.ModelParams.ParamSetUtils module molass_legacy.ModelParams.ParamsSheetBase module molass_legacy.ModelParams.RtEmgParamsSheet module molass_legacy.ModelParams.SdmParams module molass_legacy.ModelParams.SdmParamsSheet module molass_legacy.ModelParams.SdmPlotUtils module molass_legacy.ModelParams.SdmSliderInfo module molass_legacy.ModelParams.SeccolFunctions module molass_legacy.ModelParams.SimpleSecParams module molass_legacy.ModelParams.StcAdjuster module molass_legacy.ModelParams.StcParamsSheet module molass_legacy.Models module molass_legacy.Models.AffineContinuityDemo module molass_legacy.Models.CfsEvalPeaks module molass_legacy.Models.CfsEvalPeaksDemo module molass_legacy.Models.Characteristic module molass_legacy.Models.CharacteristicDemo module molass_legacy.Models.EGH module molass_legacy.Models.Egh2Emg module molass_legacy.Models.ElutionCurveModels module molass_legacy.Models.ElutionModelDemo module molass_legacy.Models.ElutionModelUtils module molass_legacy.Models.EMG module molass_legacy.Models.HistoryDemo module molass_legacy.Models.InvertibleSpline module molass_legacy.Models.ModelUtils module molass_legacy.Models.ModelUtilsException module molass_legacy.Models.MomentFitting module molass_legacy.Models.Proportional module molass_legacy.Models.ProportionalDemo module molass_legacy.Models.RateTheoryDemo module molass_legacy.Models.Tentative module molass_legacy.Models.TentativeDemo module molass_legacy.MultiProc module molass_legacy.MultiProc.Driver module molass_legacy.MultiProc.Manager module molass_legacy.MultiProc.ManagerDialog module molass_legacy.MXD module molass_legacy.ObjectiveFunctions module molass_legacy.ObjectiveFunctions.G0346 module molass_legacy.ObjectiveFunctions.G0525 module molass_legacy.ObjectiveFunctions.G0665 module molass_legacy.ObjectiveFunctions.G0705 module molass_legacy.ObjectiveFunctions.G1100 module molass_legacy.ObjectiveFunctions.G2010 module molass_legacy.OnTheFly module molass_legacy.OnTheFly.DebugDialog module molass_legacy.OnTheFly.DebugImpl module molass_legacy.Optimizer module molass_legacy.Optimizer.AdhocFigure module molass_legacy.Optimizer.AllParameters module molass_legacy.Optimizer.AscDscDifference module molass_legacy.Optimizer.Asymptotical module molass_legacy.Optimizer.BackRunner module molass_legacy.Optimizer.BaselineOptimizer module molass_legacy.Optimizer.BasicOptimizer module molass_legacy.Optimizer.BoundaryView module molass_legacy.Optimizer.BoundsAnalysis module molass_legacy.Optimizer.BoundsInspection module molass_legacy.Optimizer.ColumnInterp module molass_legacy.Optimizer.ColumnInterpGPU module molass_legacy.Optimizer.ComplementaryView module molass_legacy.Optimizer.CompositeInfo module molass_legacy.Optimizer.DefaultNumPeaks module molass_legacy.Optimizer.EghGradient module molass_legacy.Optimizer.ElutionComposer module molass_legacy.Optimizer.ElutionModelsGPU module molass_legacy.Optimizer.FactorCurvePlot module molass_legacy.Optimizer.FixedBaselineOptimizer module molass_legacy.Optimizer.FullOptDialog module molass_legacy.Optimizer.FullOptInput module molass_legacy.Optimizer.FullOptResult module molass_legacy.Optimizer.FullOptUtils module molass_legacy.Optimizer.FuncImporter module molass_legacy.Optimizer.FuncReloadUtils module molass_legacy.Optimizer.FunctionChanger module molass_legacy.Optimizer.FunctionDebugger module molass_legacy.Optimizer.FunctionDebuggerUtils module molass_legacy.Optimizer.FvScoreConverter module molass_legacy.Optimizer.FvScoreDetails module molass_legacy.Optimizer.FvScoreInspecor module molass_legacy.Optimizer.FvSynthesisOptimizer module molass_legacy.Optimizer.FvSynthesizer module molass_legacy.Optimizer.FvSynthesizerHistory module molass_legacy.Optimizer.GuinierRg module molass_legacy.Optimizer.InitialInfo module molass_legacy.Optimizer.IntegerRatios module molass_legacy.Optimizer.JobStateCanvas module molass_legacy.Optimizer.JobStateInfo module molass_legacy.Optimizer.LrfExporter module molass_legacy.Optimizer.LrfOptimizer module molass_legacy.Optimizer.ModifyStateDialog module molass_legacy.Optimizer.MwIntegrity module molass_legacy.Optimizer.NaviFrame module molass_legacy.Optimizer.NpSharedMemory module molass_legacy.Optimizer.NumComponents module molass_legacy.Optimizer.NumericalUtils module molass_legacy.Optimizer.OptConstants module molass_legacy.Optimizer.OptDataSets module molass_legacy.Optimizer.optimizer module molass_legacy.Optimizer.OptimizerMain module molass_legacy.Optimizer.OptimizerSettings module molass_legacy.Optimizer.OptimizerUtils module molass_legacy.Optimizer.OptJobInfo module molass_legacy.Optimizer.OptJobResultInfo module molass_legacy.Optimizer.OptLogFile module molass_legacy.Optimizer.OptLrfInfo module molass_legacy.Optimizer.OptLrfInfoDebug module molass_legacy.Optimizer.OptStrategyDialog module molass_legacy.Optimizer.ParameterTransition module molass_legacy.Optimizer.ParameterTransitionPlot module molass_legacy.Optimizer.ParamsAdjuster module molass_legacy.Optimizer.ParamsInspection module molass_legacy.Optimizer.ParamsIterator module molass_legacy.Optimizer.ParamsSelector module molass_legacy.Optimizer.PenaltyUtils module molass_legacy.Optimizer.RatioInterpretIllust module molass_legacy.Optimizer.ResidualView module molass_legacy.Optimizer.RestartPatcher module molass_legacy.Optimizer.ResultAnimation module molass_legacy.Optimizer.ResultFolderSelector module molass_legacy.Optimizer.ResultProxy module molass_legacy.Optimizer.RgCurveInspect module molass_legacy.Optimizer.RgDiscreteness module molass_legacy.Optimizer.RgSecUpdater module molass_legacy.Optimizer.RgVisibleFigure module molass_legacy.Optimizer.ScaleAdjustInspect module molass_legacy.Optimizer.ScoreTransition module molass_legacy.Optimizer.SecConformance module molass_legacy.Optimizer.SecInspection module molass_legacy.Optimizer.SettingsSerializer module molass_legacy.Optimizer.SimpleDebugUtils module molass_legacy.Optimizer.StateSequence module molass_legacy.Optimizer.StrategicOptimizer module molass_legacy.Optimizer.StrategyEditor module molass_legacy.Optimizer.StructureFactorBounds module molass_legacy.Optimizer.StructureFactorBoundsDemo module molass_legacy.Optimizer.SvdTutorial module molass_legacy.Optimizer.temp module molass_legacy.Optimizer.TheDebugUtils module molass_legacy.Optimizer.TheUtils module molass_legacy.Optimizer.TwoParamAnalysis module molass_legacy.Optimizer.UvBaselineEstimator module molass_legacy.Optimizer.ValidComponents module molass_legacy.Optimizer.WFM module molass_legacy.Optimizer.XrStateFigure module molass_legacy.Optimizer.XrUvScaleRatio module molass_legacy.Particles module molass_legacy.Particles.SmcModel module molass_legacy.Particles.SmcSolver module molass_legacy.Pdb module molass_legacy.Pdb.MwRgSurvey module molass_legacy.Pdb.PdbFetcherDialog module molass_legacy.Pdb.PypdbLite module molass_legacy.Peaks module molass_legacy.Peaks.EditCanvas module molass_legacy.Peaks.EghSupples module molass_legacy.Peaks.EghTauLimits module molass_legacy.Peaks.ElutionModels module molass_legacy.Peaks.Hyperbola module molass_legacy.Peaks.HyperbolaDemo module molass_legacy.Peaks.HyperbolaFit module molass_legacy.Peaks.ModeledCurve module molass_legacy.Peaks.MomentsUtils module molass_legacy.Peaks.PeakDevel module molass_legacy.Peaks.PeakEditor module molass_legacy.Peaks.PeakEditorUtils module molass_legacy.Peaks.PeakFronting module molass_legacy.Peaks.PeakParamsSet module molass_legacy.Peaks.PeProgressConstants module molass_legacy.Peaks.RobustCurve module molass_legacy.Peaks.RobustPeaks module molass_legacy.Peaks.WindowMapping module molass_legacy.Pomegranate module molass_legacy.Pomegranate.MappingGmmDecomposer module molass_legacy.Prob module molass_legacy.Prob.AnimatedHistogram module molass_legacy.Prob.ClusteringUtils module molass_legacy.Prob.ConvolutionByDice module molass_legacy.Prob.DenoiseFigures module molass_legacy.Prob.DiscretePdf module molass_legacy.Prob.DualEghMixture module molass_legacy.Prob.DualEghMixtureUtils module molass_legacy.Prob.EghBySampling module molass_legacy.Prob.EghMixture module molass_legacy.Prob.EghMixtureUtils module molass_legacy.Prob.EmgBySampling module molass_legacy.Prob.EmgEstimation module molass_legacy.Prob.EmgMixture module molass_legacy.Prob.EmgMixtureUtils module molass_legacy.Prob.GammaVisualizer module molass_legacy.Prob.GaussianMixture module molass_legacy.Prob.gmm_dphem_learn module molass_legacy.Prob.GroupingMatrix module molass_legacy.Prob.GssMixture module molass_legacy.Prob.GssMixtureUtils module molass_legacy.Prob.itsample module molass_legacy.Prob.KL_Divergence module molass_legacy.Prob.MixedElutionModel module molass_legacy.Prob.MmAnimator module molass_legacy.Prob.PairedDataSets module molass_legacy.Prob.ProbData module molass_legacy.Prob.ProbDataUtils module molass_legacy.Prob.ProbDensity module molass_legacy.Prob.ProbDensityUtils module molass_legacy.Prob.pylib_dphem module molass_legacy.Prob.Qmm3dFigure module molass_legacy.Prob.QmmDenssMenu module molass_legacy.Prob.QmmMenu module molass_legacy.Prob.QmmOptions module molass_legacy.Prob.QmmResultSaver module molass_legacy.Prob.QmmWindowSetting module molass_legacy.Prob.QuadEghMixtureUtils module molass_legacy.Prob.QuadEmgMixtureUtils module molass_legacy.Prob.QuadMM module molass_legacy.Prob.QuadMmUtils module molass_legacy.Prob.SklMixtureUtils module molass_legacy.Prob.SmbMixture module molass_legacy.Prob.SmbMixtureUtils module molass_legacy.Processes module molass_legacy.Processes.Dummy module molass_legacy.Processes.GUI module molass_legacy.Processes.Loader module molass_legacy.Processes.Main module molass_legacy.Processes.Recognizer module molass_legacy.Processes.RgComputer module molass_legacy.Processes.SharedInfo module molass_legacy.Protein module molass_legacy.Protein.UvSensitivity module molass_legacy.Protein.WypMassRatios module molass_legacy.PSD module molass_legacy.Python module molass_legacy.QuickAnalysis module molass_legacy.QuickAnalysis.AnalysisGuide module molass_legacy.QuickAnalysis.Analyzer module molass_legacy.QuickAnalysis.AnalyzerDialogProxy module molass_legacy.QuickAnalysis.Homopeak module molass_legacy.QuickAnalysis.JudgeHolder module molass_legacy.QuickAnalysis.ModeledPeaks module molass_legacy.QuickAnalysis.ModeledPeaksTester module molass_legacy.QuickAnalysis.ParammedModel module molass_legacy.QuickAnalysis.PeakUtils module molass_legacy.QuickAnalysis.PreDecomposer module molass_legacy.QuickAnalysis.RgDiffRatios module molass_legacy.RangeEditors module molass_legacy.RangeEditors.DecompDummyDialog module molass_legacy.RangeEditors.DecompDummyFrame module molass_legacy.RangeEditors.DecompEditorDialog module molass_legacy.RangeEditors.DecompEditorFrame module molass_legacy.RangeEditors.DecompPlotUtils module molass_legacy.RangeEditors.DecompSpecPanel module molass_legacy.RangeEditors.RangeEditorDialog module molass_legacy.RangeEditors.RangeEditorFrame module molass_legacy.RangeEditors.RangeSpecFrame module molass_legacy.RangeEditors.SuperEditorFrame module molass_legacy.Rank module molass_legacy.Rank.Boundary module molass_legacy.Rank.RankControl module molass_legacy.Rank.RankView module molass_legacy.Rank.SRR module molass_legacy.Rank.SrrStats module molass_legacy.Rank.SrrTutor module molass_legacy.Rank.Synthesized module molass_legacy.ReAtsas module molass_legacy.ReAtsas.Almerge module molass_legacy.ReAtsas.AtsasPlotter module molass_legacy.ref_codes module molass_legacy.Reports module molass_legacy.Reports.CharacterFormatter module molass_legacy.Reports.ClipboardConstants module molass_legacy.Reports.DatgnomExcelFormatter module molass_legacy.Reports.DatgnomResultBook module molass_legacy.Reports.DefaultFont module molass_legacy.Reports.ExcelEnvDepend module molass_legacy.Reports.GuinierAnalysisResultBook module molass_legacy.Reports.GuinierExcelFormatter module molass_legacy.Reports.ReportUtils module molass_legacy.Reports.SummaryBook module molass_legacy.Reports.SummaryExcelFormatter module molass_legacy.Reports.ZeroExExcelFormatter module molass_legacy.Reports.ZeroExtrapolationOverlayBook module molass_legacy.Reports.ZeroExtrapolationResultBook module molass_legacy.Rgg module molass_legacy.Rgg.LogUtils module molass_legacy.Rgg.MostSimultaneous module molass_legacy.Rgg.RggUtils module molass_legacy.Rgg.RgRefiner module molass_legacy.Rgg.UvAdjuster module molass_legacy.Rgg.VariationalMixture module molass_legacy.RgProcess module molass_legacy.RgProcess.RgAnalysis module molass_legacy.RgProcess.RgCurve module molass_legacy.RgProcess.RgCurveComputer module molass_legacy.RgProcess.RgCurveProxy module molass_legacy.RgProcess.RgCurveUtils module molass_legacy.RgProcess.RgManager module molass_legacy.Saxs module molass_legacy.Saxs.EdBoundary module molass_legacy.Saxs.EdPlotter module molass_legacy.Saxs.EdViewer module molass_legacy.Saxs.PhaseRetrieval module molass_legacy.Saxs.PhaseRetrievalDemo module molass_legacy.Saxs.RankAnalysis module molass_legacy.Saxs.ReciprocalData module molass_legacy.Saxs.SaxsCurve module molass_legacy.Saxs.SaxsCurveUtils module molass_legacy.Saxs.SaxsDetector module molass_legacy.Saxs.SaxsSamples module molass_legacy.Saxs.SaxsSimulator module molass_legacy.Saxs.Terbium module molass_legacy.SaxsTools module molass_legacy.SaxsTools.PdbCrysol module molass_legacy.SecSaxs module molass_legacy.SecSaxs.DataSet module molass_legacy.SecSaxs.DataTreatment module molass_legacy.SecSaxs.ElCurve module molass_legacy.SecTheory module molass_legacy.SecTheory.BasicModels module molass_legacy.SecTheory.BasicProofs module molass_legacy.SecTheory.BoundControl module molass_legacy.SecTheory.Cavazzini1999 module molass_legacy.SecTheory.CavazziniProof module molass_legacy.SecTheory.ColumnConstants module molass_legacy.SecTheory.ColumnIllust module molass_legacy.SecTheory.ConformanceDemo module molass_legacy.SecTheory.CumsumInverse module molass_legacy.SecTheory.DiporeSecSimulation module molass_legacy.SecTheory.DiporeSimulation module molass_legacy.SecTheory.Distinction module molass_legacy.SecTheory.Dondi1986 module molass_legacy.SecTheory.Dondi2002 module molass_legacy.SecTheory.DondiProof module molass_legacy.SecTheory.Edm module molass_legacy.SecTheory.EdmDemo module molass_legacy.SecTheory.EdmSpike module molass_legacy.SecTheory.EghCompat module molass_legacy.SecTheory.ExclCurveUtils module molass_legacy.SecTheory.ExclusionCurveSpike module molass_legacy.SecTheory.Felinger2005 module molass_legacy.SecTheory.FitTrialNonCf module molass_legacy.SecTheory.FoleyDorseyEmg module molass_legacy.SecTheory.HermansEmg module molass_legacy.SecTheory.InitialGuess module molass_legacy.SecTheory.LanJorgensonEgh module molass_legacy.SecTheory.LocalOptimizer module molass_legacy.SecTheory.LognormalPoreCF module molass_legacy.SecTheory.LognormalStudy module molass_legacy.SecTheory.MartinSynge module molass_legacy.SecTheory.MolassProof module molass_legacy.SecTheory.MomentAnalysis module molass_legacy.SecTheory.MonoPore module molass_legacy.SecTheory.MonoporeExclCurve module molass_legacy.SecTheory.MonoporeSecSimulation module molass_legacy.SecTheory.MonoporeSimulation module molass_legacy.SecTheory.MwRgFigure module molass_legacy.SecTheory.MwRgInfo module molass_legacy.SecTheory.NumPlates module molass_legacy.SecTheory.OligoporeExclCurve module molass_legacy.SecTheory.PeakAsymmetry module molass_legacy.SecTheory.PlateNumberEgh module molass_legacy.SecTheory.PlateTheory module molass_legacy.SecTheory.PoresizeFreedom module molass_legacy.SecTheory.RealisticProof module molass_legacy.SecTheory.RealisticSolver module molass_legacy.SecTheory.RetensionTime module molass_legacy.SecTheory.SecCF module molass_legacy.SecTheory.SecEstimator module molass_legacy.SecTheory.SecParamsPlot module molass_legacy.SecTheory.SecParamsSurvey module molass_legacy.SecTheory.SecPDF module molass_legacy.SecTheory.SecSimulator module molass_legacy.SecTheory.Sepsey2014 module molass_legacy.SecTheory.SepseyProof module molass_legacy.SecTheory.ShapeRgFigure module molass_legacy.SecTheory.SinglePoreNonCf module molass_legacy.SecTheory.StochasticModels module molass_legacy.SecTheory.StochasticSolver module molass_legacy.SecTheory.T0UpperBound module molass_legacy.SecTheory.TriporeExclCurve module molass_legacy.SecTheory.TriporeSecSimulation module molass_legacy.SecTheory.TriporeSimulation module molass_legacy.SecTools module molass_legacy.SecTools.AverageMakerDialog module molass_legacy.SecTools.DataAverager module molass_legacy.SecTools.LogGuinierKratkyPlotter module molass_legacy.Selective module molass_legacy.Selective.AdvancedAdapter module molass_legacy.Selective.AdvancedFrame module molass_legacy.Selective.BridgeUtils module molass_legacy.Selective.DataFilter module molass_legacy.Selective.DevelTest module molass_legacy.Selective.IftOptimizer module molass_legacy.Selective.KpdMinimizer module molass_legacy.Selective.LrfRgComputer module molass_legacy.Selective.LrfSource module molass_legacy.Selective.MinimizerUtils module molass_legacy.Selective.ModelFrameStatus module molass_legacy.Selective.ModelSelectFrame module molass_legacy.Selective.NumComponents module molass_legacy.Selective.PeakProxy module molass_legacy.Selective.PropOptimizer module molass_legacy.Selective.PropOptimizerEDM module molass_legacy.Selective.PropOptimizerEGH module molass_legacy.Selective.PropOptimizerEMG module molass_legacy.Selective.PropOptimizerImpl module molass_legacy.Selective.PropOptimizerSTC module molass_legacy.Selective.Proportions module molass_legacy.Selective.RdrChart module molass_legacy.Selective.RdrMinimizer module molass_legacy.Selective.StochasticAdapter module molass_legacy.Selective.V1ParamsAdapter module molass_legacy.Selective.VariedPropAnalysis module molass_legacy.SerialAnalyzer module molass_legacy.SerialAnalyzer.AbnormalityCheck module molass_legacy.SerialAnalyzer.AffineDemo module molass_legacy.SerialAnalyzer.AnalysisRangeManager module molass_legacy.SerialAnalyzer.AnalyzerUtil module molass_legacy.SerialAnalyzer.AnimObjects module molass_legacy.SerialAnalyzer.AveragingDiscussion module molass_legacy.SerialAnalyzer.BasePercentileOffset module molass_legacy.SerialAnalyzer.BasePlane module molass_legacy.SerialAnalyzer.BaseSurfaceSpline module molass_legacy.SerialAnalyzer.BpoDependencyDemo module molass_legacy.SerialAnalyzer.ConnectedIntervals module molass_legacy.SerialAnalyzer.CurveFeatures module molass_legacy.SerialAnalyzer.CurveSaverDialog module molass_legacy.SerialAnalyzer.CustomNavigationToolbar module molass_legacy.SerialAnalyzer.DataUtils module molass_legacy.SerialAnalyzer.DeveloperOptions module molass_legacy.SerialAnalyzer.DevSettings module molass_legacy.SerialAnalyzer.DraggableLine module molass_legacy.SerialAnalyzer.DraggablePoints module molass_legacy.SerialAnalyzer.DriftAnalyzer module molass_legacy.SerialAnalyzer.DriftLinearModel module molass_legacy.SerialAnalyzer.DriftSimulation module molass_legacy.SerialAnalyzer.ElutionalSmootherUtils module molass_legacy.SerialAnalyzer.ElutionBaseCurve module molass_legacy.SerialAnalyzer.ElutionCurve module molass_legacy.SerialAnalyzer.ElutionStainModel module molass_legacy.SerialAnalyzer.GuinierProofPlot module molass_legacy.SerialAnalyzer.GuinierStartSelector module molass_legacy.SerialAnalyzer.InputOutputDisplay module molass_legacy.SerialAnalyzer.InputSmootherAveraging module molass_legacy.SerialAnalyzer.LinearityScore module molass_legacy.SerialAnalyzer.LowPercentileSpline module molass_legacy.SerialAnalyzer.LowRankSolver module molass_legacy.SerialAnalyzer.LPM_Animation module molass_legacy.SerialAnalyzer.MakeItMoreClever module molass_legacy.SerialAnalyzer.MappingAutoHelper module molass_legacy.SerialAnalyzer.MappingZoomCanvas module molass_legacy.SerialAnalyzer.MplPlotCanvas module molass_legacy.SerialAnalyzer.NoExcelWarningDialog module molass_legacy.SerialAnalyzer.NormalVectorDiff module molass_legacy.SerialAnalyzer.OptimalSmoothing module molass_legacy.SerialAnalyzer.PairedRangeLogger module molass_legacy.SerialAnalyzer.PlateauRegions module molass_legacy.SerialAnalyzer.PlotAnnotation module molass_legacy.SerialAnalyzer.PrerecogProxy module molass_legacy.SerialAnalyzer.PreSyncViewer module molass_legacy.SerialAnalyzer.ProgressChart module molass_legacy.SerialAnalyzer.ProgressInfoUtil module molass_legacy.SerialAnalyzer.ProofPlot module molass_legacy.SerialAnalyzer.QuantileRegression module molass_legacy.SerialAnalyzer.QuantileRegressionSklearn module molass_legacy.SerialAnalyzer.ResultGui module molass_legacy.SerialAnalyzer.ResultTable module molass_legacy.SerialAnalyzer.Scattering3dPlot module molass_legacy.SerialAnalyzer.Scattering3dSimple module molass_legacy.SerialAnalyzer.ScatteringBasecomposite module molass_legacy.SerialAnalyzer.ScatteringBaseCorrector module molass_legacy.SerialAnalyzer.ScatteringBasecurve module molass_legacy.SerialAnalyzer.ScatteringBaseInvestigator module molass_legacy.SerialAnalyzer.ScatteringBasespline module molass_legacy.SerialAnalyzer.ScatteringBasesurface module molass_legacy.SerialAnalyzer.ScatteringBaseUtil module molass_legacy.SerialAnalyzer.ScatteringPlot module molass_legacy.SerialAnalyzer.ScatteringViewUtils module molass_legacy.SerialAnalyzer.SdDebugger module molass_legacy.SerialAnalyzer.SerialAtsasTools module molass_legacy.SerialAnalyzer.SerialControlInfo module molass_legacy.SerialAnalyzer.SerialController module molass_legacy.SerialAnalyzer.SerialData module molass_legacy.SerialAnalyzer.SerialDataLoader module molass_legacy.SerialAnalyzer.SerialDataUtils module molass_legacy.SerialAnalyzer.SerialTestUtils module molass_legacy.SerialAnalyzer.SettingsDialog module molass_legacy.SerialAnalyzer.SimulatedAnnealing module molass_legacy.SerialAnalyzer.SimulatedExtrapolation module molass_legacy.SerialAnalyzer.SpecialistOptions module molass_legacy.SerialAnalyzer.SphericalModel module molass_legacy.SerialAnalyzer.SphericalModelNew module molass_legacy.SerialAnalyzer.StageExtrapolation module molass_legacy.SerialAnalyzer.StageGuinier module molass_legacy.SerialAnalyzer.StageSummary module molass_legacy.SerialAnalyzer.Uv2dLpm module molass_legacy.SerialAnalyzer.UvBaseSurface module molass_legacy.SerialAnalyzer.ZeroExtrapolator module molass_legacy.SimTools module molass_legacy.SimTools.EoiiPlotUtils module molass_legacy.SimTools.ErrorModel module molass_legacy.SimTools.HardSphere module molass_legacy.Simulative module molass_legacy.Simulative.ApproxBoundary module molass_legacy.Simulative.ApproxBoundaryDemo module molass_legacy.Simulative.LognormalPsd module molass_legacy.Simulative.PsdSimulation module molass_legacy.Simulative.SeveralStudies module molass_legacy.Simulative.SimulationBridge module molass_legacy.Simulative.SimulationCushion module molass_legacy.Simulative.SimulationMain module molass_legacy.Simulative.SimulativeDemo module molass_legacy.Simulative.TemporaryTrial module molass_legacy.Solvers module molass_legacy.Solvers.NcallsEstimator module molass_legacy.SSDC module molass_legacy.SSDC.FolderEntryDialog module molass_legacy.SSDC.MappingDecomposer module molass_legacy.SSDC.SsdcAnalysis module molass_legacy.SSDC.SsdcAnalysisSdm module molass_legacy.SSDC.SsdcAnalysisUtils module molass_legacy.Stochastic module molass_legacy.Stochastic.ColumnSimulation module molass_legacy.Stochastic.ColumnSliceStates module molass_legacy.Stochastic.NdSphericalVolume module molass_legacy.Stochastic.StationaryMove module molass_legacy.SymPy module molass_legacy.SymPy.StochasticUtils module molass_legacy.Synthesizer module molass_legacy.Synthesizer.AppVersion module molass_legacy.Synthesizer.AutoRunTestTools module molass_legacy.Synthesizer.CreateFolderDialog module molass_legacy.Synthesizer.DebugQueue module molass_legacy.Synthesizer.Development module molass_legacy.Synthesizer.ErrorLogCheck module molass_legacy.Synthesizer.GuiPreferences module molass_legacy.Synthesizer.GuiSettingInfo module molass_legacy.Synthesizer.PilatusCounter module molass_legacy.Synthesizer.PilatusImage module molass_legacy.Synthesizer.PilatusImageInfoTable module molass_legacy.Synthesizer.PilatusImageProperty module molass_legacy.Synthesizer.PilatusImageViewer module molass_legacy.Synthesizer.PilatusUtils module molass_legacy.Synthesizer.PilatusUtilsNewStyle module molass_legacy.Synthesizer.PilatusUtilsOldStyle module molass_legacy.Synthesizer.Preferences module molass_legacy.Synthesizer.SAnglerMask module molass_legacy.Synthesizer.SynthesizerSettings module molass_legacy.Synthesizer.ZoomPan module molass_legacy.Test module molass_legacy.Test.Automation module molass_legacy.Test.DatasetFilter module molass_legacy.Test.MockMain module molass_legacy.Test.TempInspection module molass_legacy.Test.TestAllData module molass_legacy.Test.Tester module molass_legacy.Test.TesterDialog module molass_legacy.Test.TesterLogger module molass_legacy.Test.TesterMiscellaneous module molass_legacy.Test.TesterSimple module molass_legacy.Test.TestUtils module molass_legacy.Theory module molass_legacy.Theory.Anisotropy module molass_legacy.Theory.BoundedLRF module molass_legacy.Theory.Conjugate module molass_legacy.Theory.DjKinning1984 module molass_legacy.Theory.EllipsoidPlot module molass_legacy.Theory.JsPedersen1997 module molass_legacy.Theory.ModelData module molass_legacy.Theory.OrnsteinZernike module molass_legacy.Theory.PbMoore1980 module molass_legacy.Theory.PdbCrysolRoute module molass_legacy.Theory.RDF module molass_legacy.Theory.RdfCheck module molass_legacy.Theory.Rg module molass_legacy.Theory.RoigSolvas2019 module molass_legacy.Theory.RotationMatrix module molass_legacy.Theory.SfBound module molass_legacy.Theory.SolidSphere module molass_legacy.Theory.SpherePlot module molass_legacy.Theory.SphericalFit module molass_legacy.Theory.StructureFactor module molass_legacy.Theory.Survey module molass_legacy.Theory.SynthesizedLRF module molass_legacy.Theory.TdGrant2022 module molass_legacy.Theory.WLS module molass_legacy.Tools module molass_legacy.Tools.AutoExecManager module molass_legacy.Tools.DebugCushion module molass_legacy.Tools.DevTrial module molass_legacy.Tools.ElutionCurvePicker module molass_legacy.Tools.EmbedCushion module molass_legacy.Tools.EmbedCushionUtils module molass_legacy.Tools.EmbedDialog module molass_legacy.Tools.LogChecker module molass_legacy.Tools.MapperSingleton module molass_legacy.Tools.OutlineViewer module molass_legacy.Tools.SdUtils module molass_legacy.Tools.SimpleThreedView module molass_legacy.Tools.SpotDebugger module molass_legacy.Tools.ThreeDimViewer module molass_legacy.Trials module molass_legacy.Trials.BoundedLRF module molass_legacy.Trials.BoundedLRF.IterativeLrfSolver module molass_legacy.Trials.BoundedLRF.IterativeLrfSolverDemo module molass_legacy.Trimming module molass_legacy.Trimming.AutoRestrictor module molass_legacy.Trimming.AutoRestrictorProxy module molass_legacy.Trimming.CdLimit module molass_legacy.Trimming.CustomSigmoid module molass_legacy.Trimming.DataRange module molass_legacy.Trimming.DataRangeTestUtils module molass_legacy.Trimming.DiniSigmoid module molass_legacy.Trimming.EndingAnomaly module molass_legacy.Trimming.FlangeLimit module molass_legacy.Trimming.FlowChange module molass_legacy.Trimming.FlowChangeCandidates module molass_legacy.Trimming.FlowChangePrep module molass_legacy.Trimming.FlowChangeTestUtils module molass_legacy.Trimming.FlowChangeUtils module molass_legacy.Trimming.GradualRegionAnalysis module molass_legacy.Trimming.GuinierLimit module molass_legacy.Trimming.GuinierRegion module molass_legacy.Trimming.MatchingPeaks module molass_legacy.Trimming.MomentTrimming module molass_legacy.Trimming.OptimalTrimming module molass_legacy.Trimming.OptViewRange module molass_legacy.Trimming.OutlineFigure module molass_legacy.Trimming.OutlineFigureSaver module molass_legacy.Trimming.PeakRegion module molass_legacy.Trimming.PeakRegionTestUtils module molass_legacy.Trimming.PreliminaryRecognition module molass_legacy.Trimming.PreliminaryRg module molass_legacy.Trimming.Sigmoid module molass_legacy.Trimming.SigmoidApplicability module molass_legacy.Trimming.SigmoidChain module molass_legacy.Trimming.SigmoidDemo module molass_legacy.Trimming.SigmoidGuessX0 module molass_legacy.Trimming.SpecialSigmoid module molass_legacy.Trimming.TrimmingDebugDnd module molass_legacy.Trimming.TrimmingDebugUtils module molass_legacy.Trimming.TrimmingInfo module molass_legacy.Trimming.TrimmingInspection module molass_legacy.Trimming.TrimmingResult module molass_legacy.Trimming.TrimmingUtils module molass_legacy.Trimming.UvBaseSolver module molass_legacy.Trimming.UvBaseSolverInfo module molass_legacy.Trimming.UvCorrector module molass_legacy.Trimming.UvCorrectorEgh module molass_legacy.Trimming.UvCorrectorIllust module molass_legacy.Trimming.UvCorrectorSpline module molass_legacy.Trimming.UvCorrectorTestUtils module molass_legacy.Trimming.UvDiffEffects module molass_legacy.Tutorials module molass_legacy.Tutorials.DualSpace module molass_legacy.Tutorials.LinearEquations module molass_legacy.Tutorials.LinTranAnim module molass_legacy.Tutorials.LPM module molass_legacy.Tutorials.MpInverseAnim module molass_legacy.Tutorials.MpInverseAnim3D module molass_legacy.Tutorials.MpInverseBasic module molass_legacy.Tutorials.SvdAnimation module molass_legacy.Tutorials.VoxelFFT module molass_legacy.Tutorials.VoxelUtils module molass_legacy.UV module molass_legacy.UV.Absorbance module molass_legacy.UV.AbsorbancePlot module molass_legacy.UV.AbsorbanceSaveDialog module molass_legacy.UV.AbsorbanceViewer module molass_legacy.UV.AbsorbanceViewerPub module molass_legacy.UV.AbsorbanceViewUtils module molass_legacy.UV.Foldedness module molass_legacy.UV.FoldednessDemo module molass_legacy.UV.LrfMappingDemo module molass_legacy.UV.PlainCurve module molass_legacy.UV.PlainCurveUtils module molass_legacy.UV.Spike module molass_legacy.UV.UvPreRecog module molass_legacy.UV.WYF_Ratios module molass_legacy.UV.WYF_RatiosPlot module molass_legacy.UV.WYF_RatiosSurvey module molass_legacy.UV.XrayProportional module molass_legacy.V2PropOptimizer module molass_legacy.V2PropOptimizer.PropOptimizer module molass_legacy.V2PropOptimizer.PropOptimizerDialogs module molass_legacy.V2PropOptimizer.PropOptimizerEGH module molass_legacy.V2PropOptimizer.PropOptimizerSTC module molass_legacy.V2PropOptimizer.PropOptimizerUtils module molass_legacy.V2PropOptimizer.PropOptMenu module molass_legacy.V2PropOptimizer.RdrChart module molass_legacy.V2PropOptimizer.V1PreviewAdapter module molass_legacy.V2PropOptimizer.V1RangeCoverter module molass_legacy.V2PropOptimizer.VariedPropAnalysis module molass_legacy.Wave module molass_legacy.Wave.Beam module molass_legacy.Wave.Circle module molass_legacy.Wave.dynamic_image2 module molass_legacy.Wave.Euler module molass_legacy.Wave.Scattering1 module molass_legacy.Wave.Scattering2 module molass_legacy.Wave.ScatteringN module moment() (DiscreteRV method) moment_trimming_info_debug_plot() (in module molass_legacy.Trimming.MomentTrimming) moments_demo() (LrfSource method) moments_proof() (in module molass_legacy.Prob.EghBySampling) (in module molass_legacy.Prob.EmgBySampling) monitor_control_thread() (ElutionMapperCanvas method) monopore_gec() (in module molass_legacy.SecTheory.Dondi2002) monopore_study() (LrfSource method) MonoPoreModel (class in molass_legacy.SecTheory.Felinger2005) MonoPoreMovingZoneModel (class in molass_legacy.SecTheory.Felinger2005) more_warped_weight_vector() (in module molass_legacy.KekLib.NumpyUtils) motion_notify_callback() (DraggableCurves method) (DraggableLine method) (in module molass_legacy.KekLib.DraggableArrow) mouse_move() (CustomNavigationToolbar method) (NavigationToolbar method) move() (CrysolExecutor method) (DraggableCurves method) (ElutionCurveFrame method) move_step() (RgAnalysisDialog method) move_to_target() (ListingFrame method) move_widget_image() (ListingFrame method) moveto() (Logger method) moving_average() (in module molass_legacy.KekLib.NumpyUtils) moving_zone_phi() (in module molass_legacy.SecTheory.SecCF) mpeaks (AutoRestrictor attribute) MpInverse (class in molass_legacy.Extrapolation.ExtrapolationProof) MpInverseAnim (class in molass_legacy.Tutorials.MpInverseAnim) MpInverseAnim3D (class in molass_legacy.Tutorials.MpInverseAnim3D) mpl_1_5_backward_compatible_init() (in module molass_legacy.KekLib.OurMatplotlib) mpl_font_init() (in module molass_legacy.KekLib.OurMatplotlib) mpl_setup() (in module molass_legacy.KekLib.DebugPlotUtils) mpl_teardown() (in module molass_legacy.KekLib.DebugPlotUtils) MplBackGround (class in molass_legacy.KekLib.OurMatplotlib) MplCanvas (class in molass_legacy.KekLib.MplCanvas) MplClone (class in molass_legacy.KekLib.mplclofa) MplPlotCanvas (class in molass_legacy.SerialAnalyzer.MplPlotCanvas) mse() (MF method) multi_average_two() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) MwIntegrityPlot (class in molass_legacy.Optimizer.MwIntegrity) MwRgFigure (class in molass_legacy.SecTheory.MwRgFigure) MwRgInfo (class in molass_legacy.SecTheory.MwRgInfo) mwVcerrf() (Sasrec method), [1] mwVperrf() (Sasrec method), [1] my_buttonbox() (DebugPlot method) my_strftime() (in module molass_legacy.Synthesizer.AutoRunTestTools) my_weighted_kmeans() (in module molass_legacy.Prob.pylib_dphem) myabs() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mybinmean() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mybinmean_optimized() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) myfftn() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) MyFormatter (class in molass_legacy.SerialAnalyzer.BpoDependencyDemo) myifftn() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) myirfftn() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mylog() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mymean() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) MyMessageBox() (in module molass_legacy.KekLib.HookableMessageBox) myones() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) myrfftn() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mysqrt() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mystd() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) mysum() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) myzeros() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) myzeros_like() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core)

N

NaiiveLrfSolver (class in molass_legacy.BoundedLRF.NaiiveLrfSolver) name (PeakEGH attribute) (PeakGaussian attribute) (PeakHyperbola attribute) (SharedMemory property), [1] name_pattern3_tracer() (AverageMakerDialog method) names() (ArrayVar method) natural_sorted() (in module molass_legacy.KekLib.NaturalSort) natural_sorted_dict_items() (in module molass_legacy.KekLib.NaturalSort) NaviFrame (class in molass_legacy.Optimizer.NaviFrame) NavigationToolbar (class in molass_legacy.KekLib.OurNavigationToolbar) Nc (mixture property) nc_option_tracer() (OptStrategyDialog method) neaten_axes() (in module molass_legacy.KekLib.ThreeDimUtils) need_bq() (LrfInfo method) (LrfInfoProxy method) need_decomp() (AnalysisGuide method) need_out_pattern_update() (AverageMakerDialog method) needs_sd_corrcetion() (MappedInfo method) NestTrial_impl() (in module molass_legacy.Tools.EmbedCushion) new_grain_unit_test() (in module molass_legacy.Stochastic.ColumnSimulation) new_name() (NonExistingPath method) new_q_rg_score_func() (in module molass_legacy.GuinierAnalyzer.AutorgKekAdapter) NewGrain (class in molass_legacy.Stochastic.ColumnSimulation) next_() (InvestigatorDialog method) ng2lambda() (mixture static method) nimfa_spike() (in module molass_legacy.Decomposer.ExistingNmf) NoExcelWarningDialog (class in molass_legacy.SerialAnalyzer.NoExcelWarningDialog) non_zero_value() (in module molass_legacy.UV.Absorbance) nonascii_path_check() (in module molass_legacy.GuiParts.NonAsciiPaths) NonExistingPath (class in molass_legacy.KekLib.PathUtils) norm() (concentration_simple method) (concentration_smooth method) (profile_real_space method) (profile_simple method) (profile_smooth method) norm_concentration (mixture property) norm_diff_matrix() (in module molass_legacy.Extrapolation.SmoothnessPenalty) norm_profile (mixture property) normal_input() (in module molass_legacy.Test.TesterMiscellaneous) normal_pdf() (in module molass_legacy.Rgg.RggUtils) NormalInput (class in molass_legacy.Test.TesterMiscellaneous)

normalize() (ConcNormalizerDialog method) (in module molass_legacy.Prob.itsample) (in module molass_legacy.Saxs.Terbium) normalize_impl() (in module molass_legacy.Microfluidics.ConcNormalizer) normalized_rmsd() (in module molass_legacy.Distance.NormalizedRmsd) normalizeVec() (in module molass_legacy.KekLib.PolygonGeometry) NormalVectorDiff (class in molass_legacy.SerialAnalyzer.NormalVectorDiff) NormMinizerSmoothed (class in molass_legacy.Extrapolation.ExtrapolationProof) np_() (in module molass_legacy.SecTheory.Sepsey2014) np_loadtxt() (in module molass_legacy.KekLib.NumpyUtils) np_loadtxt_crysol() (in module molass_legacy.DataStructure.CrysolUtils) np_loadtxt_intensity() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) np_loadtxt_robust() (in module molass_legacy.KekLib.NumpyUtils) np_product_safe() (in module molass_legacy.Reports.SummaryBook) np_savetxt() (in module molass_legacy.KekLib.NumpyUtils) np_savetxt_with_comments() (in module molass_legacy.KekLib.NumpyUtils) np_savexlsx() (in module molass_legacy.KekLib.NumpyUtils) NpSharedMemory (class in molass_legacy.Optimizer.NpSharedMemory) npWLS() (in module molass_legacy.Theory.WLS) npWLS_spike() (in module molass_legacy.Theory.WLS) Nq (mixture property) (profile_real_space property) (profile_simple property) (profile_smooth property) num_components_tracer() (AdvancedFrame method) (SvdFrame method) num_files_in() (in module molass_legacy.KekLib.BasicUtils) num_peaks_tracer() (OptStrategyDialog method) num_plates_demo() (in module molass_legacy.SecTheory.MartinSynge) num_points_abs_tracer() (SettingsDialog method) num_points_int_tracer() (SettingsDialog method) num_ranges_tracer() (RangeSpecFrame method) (SpecPanel method) num_to_char() (in module molass_legacy.Prob.GroupingMatrix) NumbaDeprecationWarning NumbaPendingDeprecationWarning NumComponents (class in molass_legacy.Optimizer.NumComponents) numerical_inversion_proof() (in module molass_legacy.SecTheory.BasicProofs) Nw (concentration_simple property) (profile_simple property) Nx (concentration_simple property) (concentration_smooth property) (mixture property)

O

obj_func() (DualOptimzer method) (UvAdjuster method) object (class in molass_legacy.DENSS.denss) object_demo() (in module molass_legacy.Saxs.PhaseRetrievalDemo) objective() (BasePlane method) objective_all() (LocalOptimizer method) objective_func() (BasicOptimizer method) (G0346 method) (G0525 method) (G0665 method) (G0705 method) (G1100 method) (G2010 method) (in module molass_legacy.Optimizer.FvSynthesisOptimizer) (RealisticCf method) (SimultaneousSolver method) objective_func_for_dlib() (SimultaneousSolver method) objective_func_wrapper() (BasicOptimizer method) (FixedBaselineOptimizer method) (StrategicOptimizer method) (UvBaselineEstimator method) objective_function() (SinglePoreSolver method) ObjectVoxels (class in molass_legacy.Saxs.SaxsSamples) observe_basic_condition() (IntensityData method) observe_it_as_v1_preview() (in module molass_legacy.V2PropOptimizer.V1PreviewAdapter) (VariedPropAnalysis method) ODR_WLS (class in molass_legacy.AutorgKek.ODR_WLS) ODR_WLS_Result (class in molass_legacy.AutorgKek.ODR_WLS) ODR_WLS_Rg (class in molass_legacy.AutorgKek.WLS_Rg) ok() (AbsorbanceViewer method) (AbsorbanceViewerPub method) (AutomationDialog method) (CanvasDialog method) (DataFilter method) (DebugCanvas method) (DelayAdjuster method) (DenssGuiDialog method) (Dialog method) (EdViewer method) (GuinierStartSelector method) (ImagePropertyWindow method) (LaJudge method) (LrfResultPool method) (ParamsSelector method) (PreprocessDialog method) (SaxsSimulator method) (SimpleTutorial method) (UnfoldingTutorial method) ok_debug() (ElutionMapperCanvas method) old_demo() (in module molass_legacy.Baseline.BaseScattering) OldPilatusImage() (in module molass_legacy.KekLib.TestUtils) OLS (class in molass_legacy.AutorgKek.WLS_Basics) (class in molass_legacy.KekLib.OurStatsModels) OLS_Rg (class in molass_legacy.AutorgKek.WLS_Rg) on_arrow_touch() (TwoParamAnalysis method) on_button_click() (FileNodeEntry method) on_button_press() (AveragingDiscussion method) (MpInverseAnim3D method) (PreSyncViewer method) (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (SimpleGuinierScoreDialog method) (SimpleTutorial method) (SubtractorFrame method) (ThreeDimViewer method) (UnfoldingTutorial method) on_button_release() (MpInverseAnim3D method) on_cell_click() (GroupingMatrix method) on_changed() (DisplaySlider method), [1] on_click() (ComplementaryView method) (EdPlotter method) (ExtrapolationAnimationDialog method) (GradualRegionAnalysis method) (McAnimation method) (MwRgFigure method) on_configure() (PositionSynchronizer method) (TtkScale method) on_drag() (TkDebugDnd method) (TrimmingDebugDnd method) on_draw() (AveragingDiscussion method) (in module molass_legacy.ATSAS.CorMapAnalysis) (MpInverseAnim3D method) (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) on_drop() (ExtrapolSolverDialog method) (TkDebugDnd method) (TrimmingDebugDnd method) on_entry() (AutomationDialog method) (EdViewer method) (FileNodeEntry method) (SaxsSimulator method) (ScatteringCurvePlotter method) on_entry_adj_folder() (EntryFrame method) on_entry_file() (KnownControlPanel method) on_entry_in_folder() (AverageMakerDialog method) (AverageSubtractorDialog method) (ConcNormalizerDialog method) (EntryFrame method) (IndividualSubtractorDialog method) (RestoreSettingDialog method) (SubtractorFrame method) on_entry_log_file() (EntryFrame method) on_entry_mask_file() (EntryFrame method) on_entry_out_folder() (AverageMakerDialog method) (AverageSubtractorDialog method) (ConcNormalizerDialog method) (IndividualSubtractorDialog method) (SubtractorFrame method) on_entry_rg_folder() (OptStrategyDialog method) on_entry_root_folder() (FullOptDialog method) on_entry_syn_folder() (EntryFrame method)

on_entry_syn_folder_sub() (EntryFrame method) on_entry_xb_folder() (ScatteringSaveDialog method) (SpecialistOptionsDialog method) on_fig_dnd() (DenssGuiDialog method) on_figure_click() (DataRestrictor2dFrame method) (JobStateCanvas method) (PeakEditor method) (SecInspection method) (TrimmingResultDialog method) (VariedPropAnalysis method), [1] on_file_entry() (DenssGuiDialog method) on_focus_in() (JobStateCanvas method) on_folder_entry() (DenssGuiDialog method) on_input() (DenssGuiDialog method) on_leave_selector() (Canvas3D method) on_motion() (DraggablePoints method) on_mouse_motion() (RangeInspectorDialog method) on_move_x() (Canvas3D method) on_move_y() (Canvas3D method) on_move_z() (Canvas3D method) on_mpl_button_press() (DecompEditorFrame method) (ElutionMapperPlotter method) (OutlineFigure method) (RangeEditorFrame method) (SaxsSimulator method) on_mpl_motion_notify() (OutlineFigure method) on_pick() (DraggablePoints method) on_press() (DraggablePoints method) on_press_or_hover_x() (Canvas3D method) on_press_or_hover_y() (Canvas3D method) on_press_or_hover_z() (Canvas3D method) on_release() (DraggablePoints method) on_release_x() (Canvas3D method) on_release_y() (Canvas3D method) on_release_z() (Canvas3D method) on_resize() (PilatusImageInfoTable method) on_right_button_press() (PreSyncViewer method) (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ThreeDimViewer method) on_right_click() (AdvancedFrame method) on_select_x() (Canvas3D method) on_select_y() (Canvas3D method) on_select_z() (Canvas3D method) on_stop_raise() (in module molass_legacy.KekLib.ProgressInfo) on_the_fly() (ExtrapolSolverDialog method) on_x_change() (MdViewer method) onmove() (OurSpanSelector method) onselect() (BackgroundMaker2dFrame method) (DataRestrictor2dFrame method) (ElutionCurvePicker2dFrame method) (LpmInspector method) (OutlineViewer2dFrame method) (QmmWindowSetting method) onthefly_test() (in module molass_legacy.Estimators.EdmEstimator) (in module molass_legacy.Estimators.SdmEstimator) (in module molass_legacy.Estimators.StcEstimator) open_dev_log() (in module molass_legacy.Test.TesterLogger) open_dialog() (in module molass_legacy.Tools.EmbedDialog) open_explorer() (in module molass_legacy.KekLib.TestUtils) open_tester_log() (in module molass_legacy.Test.TesterLogger) open_w_safely() (in module molass_legacy.KekLib.BasicUtils) openWorkbook() (ExcelComClient method) openWorksheet() (ExcelComClient method) OptDataSets (class in molass_legacy.Optimizer.OptDataSets) OptDataSetsProxy (class in molass_legacy.Batch.OptDataSetsProxy) OptimalSmoothing (class in molass_legacy.SerialAnalyzer.OptimalSmoothing) OptimalTrimming (class in molass_legacy.Trimming.OptimalTrimming) optimization_strategy_tracer() (OptStrategyDialog method) optimize() (DualOptimzer method) (ElutionMapper method) (ElutionMapperAdjuster method) (LocalOptimizer method) (PropOptimizer method), [1] (SinglePoreSolver method) optimize_alpha() (Sasrec method), [1] optimize_decomposition_for_lrf() (in module molass_legacy.Optimizer.LrfOptimizer) optimize_impl() (ElutionMapperAdjuster method) (in module molass_legacy.Theory.BoundedLRF) optimize_mapper() (in module molass_legacy.Mapping.MapperConstructor) optimize_mapping() (ElutionMapper method) optimize_mapping_impl() (in module molass_legacy.Mapping.MappingOptimizer) optimize_proportion() (VariedPropAnalysis method) optimize_to_props() (in module molass_legacy.Selective.PropOptimizerEDM) (in module molass_legacy.Selective.PropOptimizerEGH) (in module molass_legacy.Selective.PropOptimizerEMG) (in module molass_legacy.Selective.PropOptimizerSTC) (in module molass_legacy.V2PropOptimizer.PropOptimizerEGH) optimize_with_two_steps() (DelayOptimizer method) optimizer_main() (in module molass_legacy.Optimizer.OptimizerMain) optimizer_thread() (PropOptimizerProgress method) OptimizerResult (class in molass_legacy.Optimizer.OptimizerUtils) OptimizerSettings (class in molass_legacy.Optimizer.OptimizerSettings) Options (class in molass_legacy.CharFunc.cf2DistFFT) OptJobInfo (class in molass_legacy.Optimizer.OptJobInfo) OptJobResultInfo (class in molass_legacy.Optimizer.OptJobResultInfo) OptLogFile (class in molass_legacy.Optimizer.OptLogFile) OptLrfInfo (class in molass_legacy.Optimizer.OptLrfInfo) OptLrfInfoProxy (class in molass_legacy.Optimizer.OptLrfInfoDebug) OptStrategyDialog (class in molass_legacy.Optimizer.OptStrategyDialog) OptViewRange (class in molass_legacy.Trimming.OptViewRange) ordinal_str() (in module molass_legacy.KekLib.BasicUtils) OurException OurSpanSelector (class in molass_legacy.KekLib.Canvas3D) OurToplevel (class in molass_legacy.KekLib.OurToplevel) OutlineFigure (class in molass_legacy.Trimming.OutlineFigure) OutlineViewer2dFrame (class in molass_legacy.Tools.OutlineViewer) OutlineViewer3dFrame (class in molass_legacy.Tools.OutlineViewer) OutlineViewerDialog (class in molass_legacy.Tools.OutlineViewer) OutlineViewerFrame (class in molass_legacy.Tools.OutlineViewer) output_extrapolation_params() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) overriding_init() (in module molass_legacy.AutorgKek.Settings)

P

P0() (in module molass_legacy.Theory.DjKinning1984) P1() (in module molass_legacy.Theory.DjKinning1984) P2() (in module molass_legacy.Theory.DjKinning1984) P2Rg() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) P5() (in module molass_legacy.Theory.JsPedersen1997) P6() (in module molass_legacy.Theory.JsPedersen1997) P6d() (in module molass_legacy.Theory.JsPedersen1997) pack() (BlinkingLabel method) (SizableEntry method) (SizableLabel method) (SlimButton method) pack_left_frame() (OutlineViewerFrame method) pad_rho() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pad_text() (in module molass_legacy.KekLib.TkSupplements) PairedDataSets (class in molass_legacy.Prob.PairedDataSets) PairedRange (class in molass_legacy.DataStructure.AnalysisRangeInfo) PairedRangeProxy (class in molass_legacy.Models.ModelUtils) pan_factory() (ZoomPan method) paper_proof_1() (in module molass_legacy.SecTheory.EdmDemo) Parallelogram (class in molass_legacy.KekLib.OurManim) parallelogram() (in module molass_legacy.KekLib.OurMatplotlib3D) ParamControlPanel (class in molass_legacy.Decomposer.ManualDecomposer) parameter_tracer() (UnknownControlPanel method) parameter_transition_brigde() (in module molass_legacy.Optimizer.ResultFolderSelector) ParameterTransitionPlot (class in molass_legacy.Optimizer.ParameterTransitionPlot) ParammedModel (class in molass_legacy.QuickAnalysis.ParammedModel) params_tracer() (ScatteringCurvePlotter method) ParamsAdjuster (class in molass_legacy.Optimizer.ParamsAdjuster) ParamsInspection (class in molass_legacy.Optimizer.ParamsInspection) ParamsSelector (class in molass_legacy.Optimizer.ParamsSelector) ParamsSheetBase (class in molass_legacy.ModelParams.ParamsSheetBase) parse_arguments() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.options) parse_saxs_dat_file() (in module molass_legacy.ATSAS.CorMapAnalysis) parsegeometry() (in module molass_legacy.KekLib.TestTkUtils) (in module molass_legacy.KekLib.TkUtils) partial (class in molass_legacy.DENSS.denss) Particle (class in molass_legacy.Stochastic.ColumnSimulation) partition() (str method) patch_and_restart() (in module molass_legacy.Optimizer.RestartPatcher) patch_and_restart_from_editor() (in module molass_legacy.Optimizer.RestartPatcher) patch_and_restart_impl() (in module molass_legacy.Optimizer.RestartPatcher) PathNotFoundException pathpatch_2d_to_3d() (in module molass_legacy.KekLib.OurMatplotlib3D) pathpatch_translate() (in module molass_legacy.KekLib.OurMatplotlib3D) pause() (MmAnimator method) PdataProxy (class in molass_legacy.V2PropOptimizer.V1PreviewAdapter) PDB (class in molass_legacy.DENSS.denss) (class in molass_legacy.DENSS.denss.core) pdb2crysol_impl() (in module molass_legacy.SaxsTools.PdbCrysol) pdb2F_multigauss() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pdb2F_simple_gauss_by_radius() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pdb2map_FFT() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pdb2map_multigauss() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pdb2map_simple_gauss_by_radius() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) PDB2MRC (class in molass_legacy.DENSS.denss) (class in molass_legacy.DENSS.denss.core) PDB2SAS (class in molass_legacy.DENSS.denss) (class in molass_legacy.DENSS.denss.core) pdb2support_fast() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pdb2support_SES() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) pdb2support_vdW() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) PdbCrysolRouteDialog (class in molass_legacy.Theory.PdbCrysolRoute) PdbFetcherDialog (class in molass_legacy.Pdb.PdbFetcherDialog) pds_simulation_impl() (in module molass_legacy.Simulative.PsdSimulation) pe_apply_cb() (V2Menu method) pe_ready_cb() (V2Menu method) peak_ends_safety_check() (PeakRegion method) peak_fronting_animation() (in module molass_legacy.SecTheory.EdmDemo) peak_fronting_demo() (in module molass_legacy.SecTheory.EdmDemo) peak_fronting_demo_3d() (in module molass_legacy.SecTheory.EdmDemo) peak_no_from_range() (ElutionCurve method) peak_tailing_demo() (in module molass_legacy.SecTheory.EdmDemo) peak_tailing_demo_3d() (in module molass_legacy.SecTheory.EdmDemo) peak_taling_animation() (in module molass_legacy.SecTheory.EdmDemo) peak_tops_correct() (PeakMappingRefiner method) PeakAsymmetry (class in molass_legacy.SecTheory.PeakAsymmetry) PeakCurve (class in molass_legacy.Mapping.PeakCurve) PeakEditor (class in molass_legacy.Peaks.PeakEditor) PeakEGH (class in molass_legacy.Peaks.RobustCurve) PeakGaussian (class in molass_legacy.Peaks.RobustCurve) PeakHyperbola (class in molass_legacy.Peaks.RobustCurve) PeakInfo (class in molass_legacy.DataStructure.PeakInfo) PeakMapper (class in molass_legacy.Mapping.PeakMapper) PeakMappingRefiner (class in molass_legacy.Mapping.PeakMappingRefiner) PeakMappingSolver (class in molass_legacy.Mapping.PeakMappingSolver) PeakMathcingError PeakModel (class in molass_legacy.Peaks.RobustCurve) PeakParamsSet (class in molass_legacy.Peaks.PeakParamsSet) PeakProxy (class in molass_legacy.Selective.PeakProxy) PeakRegion (class in molass_legacy.Trimming.PeakRegion) PeakRegionLrf (class in molass_legacy.QuickAnalysis.ModeledPeaks) PeakSetSelector (class in molass_legacy.Extrapolation.PeakSetSelector) PeProxy (class in molass_legacy.Optimizer.InitialInfo) percentile_normalize() (in module molass_legacy.Saxs.SaxsCurveUtils) Perrt() (Sasrec method), [1] PersistentInfo (class in molass_legacy.KekLib.PersistentInfo) PersistentPy (class in molass_legacy.KekLib.PersistentPy) phi() (in module molass_legacy.Theory.SolidSphere) phi_j1() (in module molass_legacy.Theory.SolidSphere) pick_callback() (DraggableCurves method) (in module molass_legacy.KekLib.DraggableArrow) pick_method_tracer() (ElutionCurvePicker2dFrame method) PilatusImage (class in molass_legacy.Synthesizer.PilatusImage) PilatusImageInfoTable (class in molass_legacy.Synthesizer.PilatusImageInfoTable) PilatusImageViewer (class in molass_legacy.Synthesizer.PilatusImageViewer) pixel_rounded_shift() (in module molass_legacy.Synthesizer.PilatusImage) place_diff_toggle_button() (RangeInspectorDialog method) place_line_buttons() (RangeInspectorDialog method) place_scale_buttons() (RangeInspectorDialog method) place_ticks() (TtkScale method) plain_plot() (ScatteringCurveViewer method) plain_ticklabel() (ExcelLogChart method) PlainCurve (class in molass_legacy.UV.PlainCurve) PlateauRegions (class in molass_legacy.SerialAnalyzer.PlateauRegions) PlatformDialog (class in molass_legacy.SerialAnalyzer.DeveloperOptions) play() (EmgBySampling method) plot() (AlmergePlotter method) (DebugPlotter method) (ElutionMixtureModel method) (in module molass_legacy.KekLib.DebugPlot) (MatrixData method) (MeasuredData method) (ModeledCurve method) (MplClone method) (RgCurve method) (ScatteringBasesurface method) (UvData method) (XrayData method) (ZxSolver method) plot_1d_intensity() (ScatterAnalysis method) plot_3d() (RawMatrix method) plot_3d_image() (in module molass_legacy.Saxs.PhaseRetrieval) plot_3d_scatter() (in module molass_legacy.Saxs.PhaseRetrieval) plot_A() (AlMergeSolver method) (ZxSolver method) plot_amino_acids_proportions() (in module molass_legacy.Protein.UvSensitivity) plot_B() (AlMergeSolver method) (ZxSolver method) plot_boundary() (in module molass_legacy.Simulative.ApproxBoundary) (in module molass_legacy.Theory.SolidSphere) plot_boundary_impl() (in module molass_legacy.Simulative.ApproxBoundary) Plot_callback_txt() (in module molass_legacy.Tools.EmbedCushion) plot_column_illust() (in module molass_legacy.SecTheory.ColumnIllust) plot_column_legend() (in module molass_legacy.SecTheory.ColumnIllust) plot_comparison_result_impl() (in module molass_legacy.Alsaker.ComparisonPlot) plot_component_curves() (in module molass_legacy.Models.ModelUtils) plot_components() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils) (ModeledData method) (ThreeStateDimerSolver method) (ThreeStateMonomerSolver method) (TwoStateSolver method) plot_concentration_elution() (SimulatedExtrapolation method) plot_cormap() (ScatterAnalysis method) plot_cube() (in module molass_legacy.KekLib.OurMatplotlib3D) (in module molass_legacy.Saxs.Terbium) plot_curve() (in module molass_legacy.Peaks.RobustCurve) (in module molass_legacy.QuickAnalysis.ModeledPeaks) plot_data() (EmgBySampling method) plot_decomp_elements() (in module molass_legacy.Optimizer.TheDebugUtils) plot_decomp_result() (in module molass_legacy.Optimizer.TheDebugUtils) plot_decomp_result_titles() (in module molass_legacy.Optimizer.TheDebugUtils) plot_decompositions() (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) plot_demo_result() (in module molass_legacy.LRF.UnknownConc) plot_difference() (ElutionMapperPlotter method) plot_distinction() (RangeInspectorDialog method) plot_ellipsoid() (in module molass_legacy.SecTheory.ShapeRgFigure) plot_ellipsoid_rg_ratio() (in module molass_legacy.SecTheory.ShapeRgFigure) plot_eoii() (in module molass_legacy.SimTools.EoiiPlotUtils) plot_first_n_diff_frames() (ScatterAnalysis method) plot_func() (ZxSolver method) plot_gmm() (in module molass_legacy.Prob.pylib_dphem) plot_gmm_elution() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils)

plot_guess() (SimpleSolver method) plot_guineier_inverval() (Plotter method) plot_guinier_kratky() (ExtrapolSolverDialog method) plot_guinier_line() (GuinierRegionInspector method) plot_heatmap() (ScatterAnalysis method) plot_hist_data() (in module molass_legacy.Prob.ProbDataUtils) (in module molass_legacy.Prob.ProbDensityUtils) plot_hist_data_list() (in module molass_legacy.Prob.ProbDensityUtils) plot_histogram() (ScatterAnalysis method) plot_histogram_2d() (in module molass_legacy.Rgg.RggUtils) plot_history() (in module molass_legacy.Optimizer.FvSynthesizerHistory) plot_input() (in module molass_legacy.DENSS.DmaxEstimation) plot_known() (ExtrapolSolverDialog method) PLOT_LABEL (ScatterAnalysis attribute) plot_line() (in module molass_legacy.KekLib.PlotUtils) plot_mapped_curve() (in module molass_legacy.Optimizer.TheDebugUtils) plot_mapped_states() (in module molass_legacy.Pomegranate.MappingGmmDecomposer) plot_mapped_uv() (UvAdjuster method) plot_modeled_peaks() (in module molass_legacy.QuickAnalysis.ModeledPeaksTester) plot_normalized_curves() (ConcOptsDialog method) PLOT_NUM (ScatterAnalysis attribute) plot_objective_state() (in module molass_legacy.ModelParams.EdmPlotUtils) (in module molass_legacy.ModelParams.EghPlotUtils) (in module molass_legacy.ModelParams.SdmPlotUtils) plot_P() (in module molass_legacy.Theory.BoundedLRF) plot_parallelepiped() (in module molass_legacy.KekLib.OurMatplotlib3D) plot_parallelogram3d() (in module molass_legacy.KekLib.OurMatplotlib3D) plot_params_history() (FitHistory method) plot_pre_sync() (MeasuredData method) plot_pwcormap() (ScatterAnalysis method) plot_q_rg() (Plotter method) plot_redraw() (SimpleGuinierAnalyzer method) plot_regression() (SimulatedExtrapolation method) plot_regression_params() (SimulatedExtrapolation method) plot_restrict_lines() (in module molass_legacy.Trimming.TrimmingDebugUtils) plot_result() (UvAdjuster method) plot_results() (SimpleGuinierAnalyzer method) plot_rg_curve() (in module molass_legacy.RgProcess.RgCurveUtils) plot_rg_curves() (in module molass_legacy.GuinierTools.RgCurveUtils) plot_rg_errorbar() (RangeInspectorDialog method) plot_rgrefiner_result() (in module molass_legacy.Rgg.RgRefiner) plot_scatter() (ScatterAnalysis method) plot_scores() (in module molass_legacy.Optimizer.TheDebugUtils) plot_sec_params() (in module molass_legacy.SecTheory.SecParamsPlot) plot_sec_params_impl() (in module molass_legacy.SecTheory.SecParamsPlot) plot_segments() (SigmoidChain method) plot_shot() (ModeledCurve method) plot_side_sigma_points() (in module molass_legacy.Trimming.TrimmingDebugUtils) plot_sphere() (in module molass_legacy.KekLib.OurMatplotlib3D) plot_ssdc_result() (in module molass_legacy.SSDC.SsdcAnalysisUtils) plot_surface() (in module molass_legacy.Microfluidics.MinimumSurface) plot_the_mapped_state() (CurveSimilarity method) plot_transition_impl() (in module molass_legacy.Optimizer.ParameterTransitionPlot) plot_variations() (OptimalSmoothing method) plot_with_ellipses() (VariationalMixture method) plot_wyf_ratios() (in module molass_legacy.UV.WYF_RatiosPlot) plot_xray_scattering() (SimulatedExtrapolation method) plot_xray_scattering_elution() (SimulatedExtrapolation method) Plotter (class in molass_legacy.SerialAnalyzer.ProofPlot) pn_estimate_initial_params() (in module molass_legacy.SecTheory.PlateNumberEgh) PnoScdMap (class in molass_legacy.LRF.PnoScdMap) POINT (class in molass_legacy.KekLib.MultiMonitor) poll() (BackRunner method) (FullOptDialog method) poly1d (class in molass_legacy.KekLib.Polynomial) polygon_area_centroid() (in module molass_legacy.KekLib.GeometryUtils) pop() (in module molass_legacy.KekLib.DebugPlot) Popen (class in molass_legacy.KekLib.SubProcess) PopenProxy (class in molass_legacy.Optimizer.BackRunner) popup() (PilatusImageInfoTable method) (ScatteringPlot method) popup_menu() (MenuButton method) popup_state_reset() (PilatusImageInfoTable method) position_changed() (RdAnim method) PositionSynchronizer (class in molass_legacy.KekLib.TkUtils) positive_value() (in module molass_legacy.ATSAS.DatGnom) post_popup_menu() (in module molass_legacy.KekLib.PopupMenuUtils) postfix_eg_update() (ScatteringSaveDialog method) (SpecialistOptionsDialog method) pre_recognize() (MeasuredData method) PreDecomposer (class in molass_legacy.QuickAnalysis.PreDecomposer) predict() (GMM method) (Model method) (Smoother method) predict_proba() (GMM method) PreferencesDialog (class in molass_legacy.Synthesizer.GuiPreferences) preliminary_check() (PeakMapper method) PreliminaryRecognition (class in molass_legacy.Trimming.PreliminaryRecognition) PreliminaryRg (class in molass_legacy.Trimming.PreliminaryRg) PreparationProgress (class in molass_legacy.Simulative.SimulationBridge) prepare() (AnimatedHistogram method) (DecompEditorDialog method) (DiscretePdf method) (FixedBaselineOptimizer method) (FullBatch method) (InputData method) (MmAnimator method) (PreparationProgress method) (RangeEditorDialog method) (UvBaselineEstimator method) prepare_curves() (RdAnim method) prepare_data_for_denss() (QmmDenssMenu method) prepare_denoise_rank() (QmmMenu method) prepare_env_for_plain_LPM() (ElutionMapper method) prepare_equation_data() (BiComponentSolver method) prepare_extrapolation() (in module molass_legacy.SerialAnalyzer.StageExtrapolation) prepare_for_demo() (JobStateInfo method) prepare_for_lrf_source() (DataBridge method) prepare_for_mf() (InputData method) prepare_for_optimization() (BasicOptimizer method) (SimultaneousSolver method) prepare_for_sec() (InputData method) prepare_from_args() (DenssGuiDialog method) prepare_init_state() (JobStateInfo method) prepare_out_folder() (Manipulator method), [1], [2], [3] prepare_rg_curve() (PeakEditor method) prepare_serialdata_env() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) PreprocessDialog (class in molass_legacy.Microfluidics.PreprocessDialog) PrerecogProxy (class in molass_legacy.SerialAnalyzer.PrerecogProxy) PreSyncViewer (class in molass_legacy.SerialAnalyzer.PreSyncViewer) pretend() (SimultaneousSolver method) preview() (RestartPatcher method) PreviewButtonFrame (class in molass_legacy.Extrapolation.PreviewButtonFrame) PreviewData (class in molass_legacy.Extrapolation.PreviewData) PreviewOptions (class in molass_legacy.Extrapolation.PreviewData) PreviewResultSaverDialog (class in molass_legacy.Extrapolation.PreviewResultSaver) previous_results_exist() (TesterDialog method) primary_peak_topx() (in module molass_legacy.Baseline.BaseScattering) principal_axes() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) principal_axis_alignment() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) print_detail_line() (ResultPrinter method) print_exception() (in module molass_legacy.KekLib.BasicUtils) print_gmm_contour() (GMM method) print_header_line() (ResultPrinter method) print_params() (RealisticCf method) print_result() (ResultPrinter method) print_result_multiple() (ResultPrinter method) print_result_single() (ResultPrinter method) print_table() (in module molass_legacy.DENSS.DenssManager) (in module molass_legacy.MultiProc.Manager) PrintNodeVisitor (class in molass_legacy.KekLib.LogicalExpression) ProbData (class in molass_legacy.Prob.ProbData) ProbDensity (class in molass_legacy.Prob.ProbDensity) ProcessorDialog (class in molass_legacy.SerialAnalyzer.DeveloperOptions) profile() (in module molass_legacy.KekLib.OurProfiler) profile_class (class in molass_legacy.LRF.regals) profile_problem() (mixture method) profile_real_space (class in molass_legacy.LRF.regals) profile_simple (class in molass_legacy.LRF.regals) profile_smooth (class in molass_legacy.LRF.regals) profiles (mixture property) progress_cb() (PreparationProgress method) progress_update() (AdvancedFrame method) ProgressCallback (class in molass_legacy.RgProcess.RgCurve) (class in molass_legacy.SerialAnalyzer.ProgressInfoUtil) ProgressChart (class in molass_legacy.SerialAnalyzer.ProgressChart) ProgressDialog (class in molass_legacy.KekLib.OnTheFlyUtils) ProgressInfo (class in molass_legacy.KekLib.ProgressInfo) ProgressInfoDialog (class in molass_legacy.KekLib.ProgressInfoDialog) ProgressLoghandler (class in molass_legacy.DENSS.DenssGui) (class in molass_legacy.KekLib.ProgressInfoDialog) (class in molass_legacy.Pdb.PdbFetcherDialog) ProgressMinDialog (class in molass_legacy.KekLib.ProgressMinDialog) proof() (in module molass_legacy.Optimizer.WFM) proof1() (in module molass_legacy.Optimizer.StructureFactorBoundsDemo) proof_1() (in module molass_legacy.SecTheory.MolassProof) proof_feasibility_demo() (in module molass_legacy.Baseline.LambertBeerProof) proof_modeled_data_demo() (in module molass_legacy.Baseline.LambertBeerProof) proof_plot() (AutoRestrictor method) (AutorgKek method) (in module molass_legacy.Baseline.Convex) (in module molass_legacy.DataStructure.EmgPeak) (in module molass_legacy.Decomposer.ElutionDecomposer) (in module molass_legacy.Elution.CurveUtils) (ProbData method) (ProbDensity method) (RgCurve method) proof_plot_impl() (RgCurve method) ProofViewer (class in molass_legacy.Extrapolation.ExtrapolationProof) PropOptimizer (class in molass_legacy.Selective.PropOptimizer) (class in molass_legacy.V2PropOptimizer.PropOptimizerUtils) PropOptimizerProgress (class in molass_legacy.V2PropOptimizer.PropOptimizerDialogs) PropOptimizerResult (class in molass_legacy.V2PropOptimizer.PropOptimizerDialogs) PropOptMenu (class in molass_legacy.V2PropOptimizer.PropOptMenu) proportion_folded() (in module molass_legacy.Microfluidics.SimpleUnfolding) Proportions_ (class in molass_legacy.Selective.Proportions) propose_background_range() (MicrofluidicElution method) ProxyCurve (class in molass_legacy.Mapping.PeakMapper) push() (in module molass_legacy.KekLib.DebugPlot) put_error() (in module molass_legacy.KekLib.ProgressInfo) put_info() (in module molass_legacy.KekLib.ProgressInfo) put_max_info() (in module molass_legacy.KekLib.ProgressInfo) put_to_tester_log_queue() (in module molass_legacy.Test.TesterLogger) PYTHON_DEMO_MONITOR (in module molass_legacy.KekLib.MultiMonitor)

Q

q_rg_score_func() (in module molass_legacy.AutorgKek.Quality) Qerrf() (Sasrec method), [1] qmax (profile_smooth property) qmin (profile_smooth property) Qmm3dFigure (class in molass_legacy.Prob.Qmm3dFigure) QmmDenssMenu (class in molass_legacy.Prob.QmmDenssMenu) QmmMenu (class in molass_legacy.Prob.QmmMenu) QmmOptionsDialog (class in molass_legacy.Prob.QmmOptions) QmmResultSaverDialog (class in molass_legacy.Prob.QmmResultSaver) QmmWindowSetting (class in molass_legacy.Prob.QmmWindowSetting)

QrgLimitsAdjuster (class in molass_legacy.AutorgKek.QrgLimitsAdjuster) QuadMM (class in molass_legacy.Prob.QuadMM) quadratic_isotherm() (in module molass_legacy.SecTheory.EdmDemo) Quality (class in molass_legacy.AutorgKek.Quality) QuantileRegression (class in molass_legacy.SerialAnalyzer.QuantileRegression) Query (class in molass_legacy.Pdb.PypdbLite) quit() (ExcelComClient method) (MappingZoomCanvas method) (MplPlotCanvas method) (TestClient method) quit_threaded_mainloop() (in module molass_legacy.KekLib.DebugPlot)

R

r5() (in module molass_legacy.Theory.JsPedersen1997) r6() (in module molass_legacy.Theory.JsPedersen1997) radio1_clicked() (ConformanceDemo method) (PeakAsymmetry method) radio2_clicked() (ConformanceDemo method) (PeakAsymmetry method) rails (UvBaseSurface attribute) raise_exc() (Thread method) rand_rotation_matrix() (in module molass_legacy.Theory.RotationMatrix) random_seed_fix_tracer() (QmmOptionsDialog method) range (class in molass_legacy.DENSS.denss) range_datgnom_book() (ExcelManager method) range_ends_tracer() (RangeInspectorDialog method) range_extrapolation_book() (ExcelManager method) range_list (RangeSpecFrame attribute) (SpecPanel attribute) range_overlay_book() (ExcelManager method) range_reset() (Canvas3D method) RangeEditorDialog (class in molass_legacy.RangeEditors.RangeEditorDialog) RangeEditorFrame (class in molass_legacy.RangeEditors.RangeEditorFrame) RangeEditorInfo (class in molass_legacy.DataStructure.RangeInfo) RangeInspectorDialog (class in molass_legacy.Extrapolation.RangeInspector) RangeRgComputer (class in molass_legacy.Selective.PropOptimizerImpl) (class in molass_legacy.V2PropOptimizer.PropOptimizer) RangeSpecFrame (class in molass_legacy.RangeEditors.RangeSpecFrame) rank_control_tracer() (PreviewButtonFrame method) RankAnalysis (class in molass_legacy.Saxs.RankAnalysis) RankInspectionFigure (class in molass_legacy.Extrapolation.RankInspection) RankView (class in molass_legacy.Rank.RankView) rankview_plot() (in module molass_legacy.Rank.SrrTutor) RankViewMenu (class in molass_legacy.Rank.RankView) RankViewParamsDialog (class in molass_legacy.Rank.RankView) ratio_interpret_illust() (in module molass_legacy.Optimizer.RatioInterpretIllust) rational_geometry() (in module molass_legacy.KekLib.TkUtils) raw_moment() (in module molass_legacy.SymPy.StochasticUtils) RawMatrix (class in molass_legacy.DataStructure.RawData) RawUv (class in molass_legacy.DataStructure.RawData) RawUvProxy (class in molass_legacy.DataStructure.RawData) RawXray (class in molass_legacy.DataStructure.RawData) RdAnim (class in molass_legacy.Conc.RdAnim) rdr_is_uncomputable() (in module molass_legacy.QuickAnalysis.JudgeHolder) re_construct_optimizer() (PeakEditor method) read() (SerialData method) read_callback_txt() (FullOptDialog method) read_callback_txt_impl() (in module molass_legacy.Optimizer.StateSequence) read_cif() (PDB method), [1] read_data() (DatgnomResultBook method) read_log() (SimpleGuinierAnalyzer method) read_mrc() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) read_pdb() (PDB method), [1] read_seed_txt() (in module molass_legacy.Optimizer.StateSequence) read_the_book() (FlowSimulator method) ReadOnlyText (class in molass_legacy.KekLib.ReadOnlyText) real_demo() (in module molass_legacy.SecTheory.CavazziniProof) (in module molass_legacy.SecTheory.Felinger2005) (in module molass_legacy.Trimming.SigmoidDemo) real_demo1() (in module molass_legacy.SecTheory.CavazziniProof) real_space_correlation_coefficient() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) realistic_demo_impl() (in module molass_legacy.LRF.UnknownConc) RealisticCf (class in molass_legacy.SecTheory.RealisticProof) RealisticCfDomain (class in molass_legacy.SecTheory.RealisticSolver) realspace_formfactor() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) realspace_gaussian_formfactor() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) RecentFolders (class in molass_legacy.KekLib.RecentFolders) ReciprocalData (class in molass_legacy.Saxs.ReciprocalData) reciprocalspace_gaussian_formfactor() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) recognize_peak_groups() (Homopeakness method) recognize_peaks() (ElutionBaseCurve method) (in module molass_legacy.QuickAnalysis.ModeledPeaks) recognize_peaks_roughly() (in module molass_legacy.Peaks.RobustPeaks) recognize_y_channel_location() (DelayOptimizer method) recognizer() (in module molass_legacy.Processes.Recognizer) recompute_decomposition() (DecompEditorFrame method) (RangeEditorFrame method) reconsider_using_lower_peak_model() (AutoRestrictor method) reconstruct_abinitio_from_scattering_profile() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) reconstruct_curves_simple() (PeakMapper method) reconstruct_optimizer() (in module molass_legacy.UV.FoldednessDemo) rectify_peaks() (ElutionDecomposer method) redraw() (LpmInspector method), [1] (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ScatteringPlot method) (SecSimulator method) (SimpleGuinierScoreDialog method) (TrimmingResultDialog method) (TwoParamAnalysis method) redraw_scores() (PeakEditor method) redraw_the_angular_canvas() (BackgroundMaker2dFrame method) redraw_the_elution_canvas() (ElutionCurvePicker2dFrame method) redraw_tracer() (InvestigatorDialog method) redraw_with_new_params() (PeakEditor method) reducible() (ElutionComposer method) reference() (ExcelLogChart method) refine_mapping_params() (PeakMappingRefiner method) refine_mapping_ranges() (ElutionMapper method) refresh() (DenssManagerDialog method) (ElutionElementBar method) (FileInfoTable method) (ManagerDialog method) (PilatusImageInfoTable method) (ProgressInfoDialog method) (ProgressMinDialog method) (ResultTable method) refresh_atsas_exe_path_listing() (SettingsDialog method) refresh_figs() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) refresh_frame() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) refresh_impl() (FileInfoTable method) refresh_log() (ProgressInfoDialog method) refresh_log_cb() (Analyzer method) refresh_spec_panels() (DecompEditorFrame method) (RangeEditorFrame method) regals (class in molass_legacy.LRF.regals) regex_glob() (in module molass_legacy.Synthesizer.PilatusUtilsOldStyle) RegressInfo (class in molass_legacy.Mapping.CurveSimilarity) regrid_Iq() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) Regularization (class in molass_legacy.LRF.LrfSolver) reload_optimizer() (in module molass_legacy.Optimizer.FuncReloadUtils) reload_preferences() (in module molass_legacy.Synthesizer.Preferences) reload_settings() (in module molass_legacy.AutorgKek.Settings) (in module molass_legacy.Synthesizer.SynthesizerSettings) relocate_rg_folder() (OptDataSets method) RelPath() (in module molass_legacy.KekLib.HookableMessageBox) remove_atomalt() (PDB method), [1] remove_atoms_from_object() (PDB method), [1] remove_by_atomname() (PDB method), [1] remove_by_atomnum() (PDB method), [1] remove_by_atomtype() (PDB method), [1] remove_by_chain() (PDB method), [1] remove_by_resname() (PDB method), [1] remove_by_resnum() (PDB method), [1] remove_cursor() (DraggableCurves method) remove_extra_components() (ParamsAdjuster method) remove_guard_for_three_state_model() (PreviewButtonFrame method) remove_head_anomalies() (HeadAnomalies method) remove_head_anomalies_impl() (HeadAnomalies method) remove_irregular_points() (FlowChange method) (UvPreRecog method) remove_peaks() (ElutionCurve method) remove_unwanted_elements() (UnifiedDecompResult method) remove_waters() (PDB method), [1] removeHandler() (Logger method) removeprefix() (str method) removesuffix() (str method) rename_existing_file() (in module molass_legacy.KekLib.BasicUtils) rename_log() (in module molass_legacy.Test.TesterLogger) rename_navi_buttons() (LinkedToplevel method) rename_previous_results() (TesterDialog method) rename_with_retry() (in module molass_legacy.KekLib.BasicUtils) render() (VisSurface method) replace() (str method) reply_messagebox() (in module molass_legacy.KekLib.MessageBoxUtils) reply_no() (in module molass_legacy.KekLib.TkTester) reply_ok() (in module molass_legacy.KekLib.TkTester) reply_yes() (in module molass_legacy.KekLib.TkTester) report_callback_exception() (RgAnalysisDialog method) report_ranges_from_analysis_ranges() (in module molass_legacy.DataStructure.AnalysisRangeInfo) reraw() (RgAnalysisDialog method) reread() (Table method) reset() (AnimatedHistogram method) (Collection method) (DecompEditorFrame method) (DiscretePdf method) (EditCanvas method) (GroupingMatrix method) (ManualAdjuster method) (ManualDecomposer method) (MmAnimator method) (ParamControlPanel method) (SecSimulator method)

reset_cells() (TkMiniTable method) reset_check() (ConformanceDemo method) (PeakAsymmetry method) reset_current_frame() (DecompEditorDialog method) reset_current_status() (SerialDataLoader method) reset_entries() (ConcFactorsEntry method) reset_exe_array() (in module molass_legacy.ATSAS.AutoRg) reset_input_status() (SerialDataLoader method) reset_load_status() (SerialDataLoader method) reset_positions() (TextGroup method) reset_radio2() (ConformanceDemo method) (PeakAsymmetry method) reset_restrict_info() (PreliminaryRecognition method) reset_sliders() (ConformanceDemo method) (PeakAsymmetry method) reset_text_color() (in module molass_legacy.KekLib.Console) reset_to_default_style() (in module molass_legacy.KekLib.OurMatplotlib) reset_to_defaults() (DecompEditorFrame method) (RangeEditorFrame method) (SettingsDialog method) (SpecialistOptionsDialog method) (SuperEditorFrame method) reset_to_initstatus() (AdvancedFrame method) reset_to_the_init_params() (ManualAdjuster method) reset_view() (OutlineViewer3dFrame method) reshape_xr_bounds() (BasicOptimizer method) ResidualView (class in molass_legacy.Optimizer.ResidualView) resort_to_simpler_solution() (ElutionMapper method) rest_synchronizing() (SecInspection method) RestartPatcher (class in molass_legacy.Optimizer.RestartPatcher) RestartPatcher_impl() (in module molass_legacy.Tools.EmbedCushion) restore_geometry() (LinkedToplevel method) restore_init() (BlinkingFrame method) restore_setting() (RestoreSettingDialog method) restore_settings() (GuiDevelopmentMenu method) restore_status() (ModelFrameStatus method) restore_trimming_info() (FullOptInput method) restore_trimming_info_impl() (in module molass_legacy.Trimming.TrimmingInfo) restore_xy_views() (PilatusImageInfoTable method) RestoredResult (class in molass_legacy.Reports.ReportUtils) RestoreSettingDialog (class in molass_legacy.SerialAnalyzer.SettingsDialog) restrict_info_changed() (PreliminaryRecognition method) Result (class in molass_legacy.AutorgKek.Result) (class in molass_legacy.AutorgKek.WLS_Basics) (class in molass_legacy.KekLib.OurStatsModels) result_animation_bridge() (in module molass_legacy.Optimizer.ResultFolderSelector) result_type_to_chart_value() (SimpleGuinierAnalyzer method) result_viewer_impl() (in module molass_legacy.Optimizer.ResultFolderSelector) ResultEvaluator (class in molass_legacy.AutorgKek.QrgLimitsAdjuster) ResultFolderSelector (class in molass_legacy.Optimizer.ResultFolderSelector) ResultGui (class in molass_legacy.SerialAnalyzer.ResultGui) ResultPrinter (class in molass_legacy.AutorgKek.ResultPrinter) ResultProxy (class in molass_legacy.Optimizer.ResultProxy) ResultTable (class in molass_legacy.SerialAnalyzer.ResultTable) retention_time() (in module molass_legacy.HdcTheory.ElutionCurve) reverse() (SvdFrame method) revive() (BackRunner method) rfind() (str method) rg_computer() (in module molass_legacy.Processes.RgComputer) rg_curve_inspect() (in module molass_legacy.Optimizer.RgCurveInspect) rg_deviation_inspect_impl() (in module molass_legacy.GuinierTools.RgCurveUtils) rg_folder_from_in_folder() (in module molass_legacy.RgProcess.RgCurveUtils) rg_folder_ok_stamp_path() (in module molass_legacy.RgProcess.RgCurve) RgAnalysisDialog (class in molass_legacy.RgProcess.RgAnalysis) RGB() (in module molass_legacy.KekLib.ExcelCOM) RgComputer (class in molass_legacy.Selective.MinimizerUtils) RgCurve (class in molass_legacy.RgProcess.RgCurve) RgCurveComputerDialog (class in molass_legacy.RgProcess.RgCurveComputer) RgCurveDbMaker (class in molass_legacy.GuinierTools.RgCurveDbMaker) RgCurveInspect_impl() (in module molass_legacy.Tools.EmbedCushion) RgCurveProxy (class in molass_legacy.RgProcess.RgCurveProxy) RgDiffRatios (class in molass_legacy.QuickAnalysis.RgDiffRatios) rgerrf() (Sasrec method), [1] rgerrfold() (Sasrec method), [1] rgfit_secconf_eval() (in module molass_legacy.ModelParams.SeccolFunctions) RgInfo (class in molass_legacy.SecTheory.LocalOptimizer) RgManager (class in molass_legacy.RgProcess.RgManager) RgRefiner (class in molass_legacy.Rgg.RgRefiner) RgVisibleFigure (class in molass_legacy.Optimizer.RgVisibleFigure) rho() (in module molass_legacy.SecTheory.Sepsey2014) rho2rg() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) rho_overlap_score() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) rindex() (str method) rjust() (str method) robust_single_pore_pdf() (in module molass_legacy.SecTheory.BasicModels) robust_single_pore_pdf_scaled() (in module molass_legacy.SecTheory.BasicModels) RobustCurve (class in molass_legacy.Peaks.RobustCurve) RobustPeaks (class in molass_legacy.Peaks.RobustPeaks) rolling_window() (in module molass_legacy.KekLib.RollingStats) rot_hyperbola() (in module molass_legacy.Peaks.HyperbolaFit) rotate() (in module molass_legacy.Elution.CurveUtils) (in module molass_legacy.GuinierAnalyzer.SimpleGuinier) (in module molass_legacy.KekLib.GeometryUtils) (in module molass_legacy.KekLib.OurManim) (in module molass_legacy.SerialAnalyzer.CurveFeatures) rotate_3d_mesh() (in module molass_legacy.Theory.RotationMatrix) rotate_coordinates() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) rotated_argmin() (in module molass_legacy.KekLib.GeometryUtils) rotated_argminmax() (in module molass_legacy.KekLib.GeometryUtils) RotatedHyperbola (class in molass_legacy.Peaks.Hyperbola) (class in molass_legacy.Peaks.HyperbolaFit) rotation() (in module molass_legacy.KekLib.OurManim) rotation_matrix() (in module molass_legacy.KekLib.OurMatplotlib3D) roud_trip() (in module molass_legacy.SecTheory.BasicProofs) round_3g() (in module molass_legacy.Reports.SummaryBook) round_3g_str() (in module molass_legacy.Reports.SummaryBook) round_3g_with_error() (in module molass_legacy.Reports.SummaryBook) round_adjust() (PilatusImage method) row_info_dict (PeakSetSelector attribute) rpartition() (str method) RscSimulator (class in molass_legacy.Synthesizer.AutoRunTestTools) rsplit() (str method) rstrip() (str method) RtEmgEstimator (class in molass_legacy.Estimators.RtEmgEstimator) RtEmgParamsSheet (class in molass_legacy.ModelParams.RtEmgParamsSheet) run() (AutomationDialog method) (AutorgKek method), [1] (AutorgKekAdapter method) (BackRunner method) (CommandMain method) (DebugDialog method) (DemoDialog method) (FullOptDialog method) (regals method) (RgManager method) (RscSimulator method) (SerialExecuter method) (TestDialog method) (TesterSimple method) run_all() (PDB2MRC method), [1] run_as_a_server() (CommandMain method) run_automation_script() (GuiDevelopmentMenu method) run_autorg() (FileInfoTable method) (ResultGui method) run_datcmp() (in module molass_legacy.ATSAS.DatCmp) run_datcmp_from_array() (in module molass_legacy.ATSAS.DatCmp) run_datgnom() (in module molass_legacy.DENSS.DmaxDependency) run_debug() (SpotDebugger method) run_decomp() (in module molass_legacy.MultiProc.Driver) run_denss() (in module molass_legacy.DENSS.DenssDriver) run_denss_for_survey() (in module molass_legacy.DENSS.DmaxDependency) run_denss_impl() (in module molass_legacy.DENSS.DenssUtils) run_denss_impl_dummy() (in module molass_legacy.DENSS.DenssUtils) run_denss_thread() (DenssGuiDialog method) run_denss_varying_dmax() (in module molass_legacy.DENSS.DmaxDependency) run_extrapolation_solver() (in module molass_legacy.Extrapolation.ExtrapolationSolver) run_extrapolation_solver_impl() (in module molass_legacy.Extrapolation.ExtrapolationSolver) run_extrapolation_solver_with_progress() (in module molass_legacy.Extrapolation.ExtrapolationSolver) run_for_all() (Manipulator method), [1], [2], [3] run_from_array() (AutorgRunner method) run_gunier_analysis() (in module molass_legacy.SerialAnalyzer.StageGuinier) run_impl() (AutorgKekAdapter method) run_jupyterlab() (in module molass_legacy.Jupyter.JupyterLab) (JupyterMenu method) run_lrf_solver_impl() (in module molass_legacy.LRF.LrfResultPool) run_manager() (in module molass_legacy.Tools.AutoExecManager) run_md() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) run_pdb2mrc() (in module molass_legacy.DENSS.DenssUtils) run_simple_guinier_animation() (FileInfoTable method) run_simulation_process() (LrfSource method) run_solver() (LrfResultPool method) run_system_command() (in module molass_legacy.ATSAS.CorMapAnalysis) run_this_python() (in module molass_legacy.KekLib.RunPython) run_this_python_stdout_lines() (in module molass_legacy.KekLib.RunPython) run_with_progress() (in module molass_legacy.KekLib.ProgressMinDialog) runas() (in module molass_legacy.KekLib.RunAsAdmin) running_mean() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) RunPythonResult (class in molass_legacy.KekLib.RunPython)

S

S() (in module molass_legacy.Theory.DjKinning1984) S0() (in module molass_legacy.Theory.DjKinning1984) S0_bound() (in module molass_legacy.Theory.SfBound) S1() (in module molass_legacy.Theory.DjKinning1984) sa_uv_loadtxt() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) sa_uv_savetxt() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) safe_index() (ColumnInterp method), [1] safe_ratios() (in module molass_legacy.Optimizer.NumericalUtils) safe_ratios_debug_plot() (in module molass_legacy.Optimizer.NumericalUtils) safely_create_spline_from_points() (in module molass_legacy.SecTheory.ExclCurveUtils) SaferSpinbox (class in molass_legacy.KekLib.SaferSpinbox) same_scale_tracer() (BpaInspector method) sample() (DiscreteRV method) (in module molass_legacy.Prob.itsample) sample_noisy() (DiscreteRV method) SAngler_WLS (class in molass_legacy.AutorgKek.SAngler_WLS) SAngler_WLS_Result (class in molass_legacy.AutorgKek.SAngler_WLS) SAngler_WLS_Rg (class in molass_legacy.AutorgKek.WLS_Rg) SAnglerMask (class in molass_legacy.Synthesizer.SAnglerMask) Sasrec (class in molass_legacy.DENSS.denss) (class in molass_legacy.DENSS.denss.core) save() (CompositeInfo method) (CurveSaverDialog method) (DataTreatment method) (DatgnomResultBook method) (EdViewer method) (EmgBySampling method) (GuinierAnalysisResultBook method) (Image method) (LinTranAnim method) (MinimalTiff method) (MmAnimator method) (MpInverseAnim method) (MpInverseAnim3D method) (OptimizerSettings method) (ParamsInspection method) (PersistentInfo method) (PersistentPy method) (PilatusImage method) (PlainCurve method) (SaxsSimulator method) (SerialXrayScattering method), [1] (SummaryBook method) (SvdAnimation method) (SvdDataSaverDialog method) (UvAbsorbance method), [1] (VoxelFFT method) (ZeroExtrapolationOverlayBook method) (ZeroExtrapolationResultBook method) save_allowing_user_reply() (in module molass_legacy.KekLib.OpenPyXlUtil) save_animation() (SpikeDialog method), [1], [2] save_as() (ParamsSheetBase method) save_as_csv() (SummaryBook method) save_background_data() (AverageSubtractorDialog method) save_buffer() (RgCurve method) save_components() (ElutionDecomposer method) save_data() (PreviewResultSaverDialog method) (QmmResultSaverDialog method) save_dialog() (AbsorbanceViewer method) save_extra_data() (PreviewResultSaverDialog method) save_fit() (PDB2MRC method), [1] save_guinier_result() (in module molass_legacy.SerialAnalyzer.StageGuinier) save_image() (ProofViewer method) save_info() (ExtrapolationDebugger method) (SdDebugger method) save_Iq_calc() (PDB2MRC method), [1] save_mapped_curves() (in module molass_legacy.Mapping.MappingUtils) save_opt_params() (in module molass_legacy.Optimizer.StateSequence) save_preferences() (in module molass_legacy.Synthesizer.Preferences) save_results() (ExtrapolSolverDialog method) save_rg_buffer() (PeakEditor method) save_settings() (in module molass_legacy.AutorgKek.Settings) (in module molass_legacy.Synthesizer.SynthesizerSettings) (SerialExecuter method) save_smoothed_data() (SerialExecuter method) save_status() (ModelFrameStatus method) save_the_curves() (DecompEditorFrame method) (ElutionMapperPlotter method) save_the_elution_curve() (OutlineFigure method) save_the_elution_curve_impl() (in module molass_legacy.Trimming.OutlineFigureSaver) save_the_figure() (CdInspectionDailog method) (DecompEditorDialog method) (ElutionMapperPlotter method) (ElutionTrimmingDialog method) (ExtrapolSolverDialog method) (GuinierRegionInspector method) (JobStateCanvas method) (LpmInspector method) (Manipulator method) (OutlineFigure method) (PeakEditor method) (PreSyncViewer method) (RangeEditorDialog method) (ThreeDimViewer method) save_the_figure_trial_impl() (in module molass_legacy.Trimming.OutlineFigureSaver) save_the_result_figure() (FullOptDialog method) save_the_upper_figure() (OutlineFigure method) save_the_upper_figure_impl() (in module molass_legacy.Trimming.OutlineFigureSaver) save_trimming_txt() (in module molass_legacy.Trimming.TrimmingInfo) save_xray_base_profiles() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) save_xray_data() (SerialData method) save_xray_scattering_base() (ScatteringSaveDialog method) save_xy_views() (PilatusImageInfoTable method) SaxsCurve (class in molass_legacy.Saxs.SaxsCurve) SaxsDetector (class in molass_legacy.Saxs.SaxsDetector) SaxsSimulator (class in molass_legacy.Saxs.SaxsSimulator) scale() (AlMergeSolver method) scale_adjust_inspect() (in module molass_legacy.Optimizer.ScaleAdjustInspect) scale_decomposed_elutions() (in module molass_legacy.Decomposer.ElutionModelScaler) scale_radii() (PDB2MRC method), [1] scale_to() (FitRecord method) scale_tracer() (ParamControlPanel method) scale_type_tracer() (RangeInspectorDialog method) ScaleAdjustInspect_impl() (in module molass_legacy.Tools.EmbedCushion) scan_dragto() (Table method) scan_mark() (Table method) ScatterAnalysis (class in molass_legacy.ATSAS.CorMapAnalysis) Scattering3dPlotDialog (class in molass_legacy.SerialAnalyzer.Scattering3dPlot) Scattering3dPlotFrame (class in molass_legacy.SerialAnalyzer.Scattering3dPlot) Scattering3dSimpleDialog (class in molass_legacy.SerialAnalyzer.Scattering3dSimple) Scattering3dSimpleFrame (class in molass_legacy.SerialAnalyzer.Scattering3dSimple) ScatteringBasecomposite (class in molass_legacy.SerialAnalyzer.ScatteringBasecomposite) ScatteringBaseCorrector (class in molass_legacy.SerialAnalyzer.ScatteringBaseCorrector) ScatteringBasecurve (class in molass_legacy.SerialAnalyzer.ScatteringBasecurve) ScatteringBaseline (class in molass_legacy.Baseline.ScatteringBaseline) (class in molass_legacy.SerialAnalyzer.LPM_Animation) ScatteringBasespline (class in molass_legacy.SerialAnalyzer.ScatteringBasespline) ScatteringBasesurface (class in molass_legacy.SerialAnalyzer.ScatteringBasesurface) ScatteringCurvePlotter (class in molass_legacy.DataStructure.ScatteringCurvePlotter) ScatteringCurveViewer (class in molass_legacy.Extrapolation.ScatteringCurveViewer) ScatteringPlot (class in molass_legacy.SerialAnalyzer.ScatteringPlot) ScatteringSaveDialog (class in molass_legacy.SerialAnalyzer.Scattering3dPlot) ScoreTransition (class in molass_legacy.Optimizer.ScoreTransition) screenshot() (in module molass_legacy.KekLib.OurScreenShot) ScrolledFrame (class in molass_legacy.KekLib.ScrolledFrame) SdDebugger (class in molass_legacy.SerialAnalyzer.SdDebugger) sdm_dipore() (in module molass_legacy.SecTheory.SecCF) SDM_estimator_test_impl() (in module molass_legacy.Estimators.TestTools) sdm_guess_impl() (in module molass_legacy.Models.MomentFitting) sdm_monopore() (in module molass_legacy.SecTheory.SecCF) sdm_tripore() (in module molass_legacy.SecTheory.SecCF) SdmEstimator (class in molass_legacy.Estimators.SdmEstimator) SdmEstimatorProxy (class in molass_legacy.Estimators.SdmEstimatorProxy) SdmParams (class in molass_legacy.ModelParams.SdmParams) SdmParamsSheet (class in molass_legacy.ModelParams.SdmParamsSheet) SdmSliderInfo (class in molass_legacy.ModelParams.SdmSliderInfo) search() (Query method) seartch_for_start() (AutorgKek method) seartch_for_stop() (AutorgKek method) sec_comformance() (in module molass_legacy.ModelParams.SimpleSecParams) sec_comformance_fixed_poreexponent() (SimpleSecParams method) sec_conformance_demo() (JobStateCanvas method) sec_elution_curves() (in module molass_legacy.SecTheory.Distinction) sec_inspection() (JobStateCanvas method) sec_oligopore_phi_impl() (in module molass_legacy.SecTheory.SecCF) SecConfCurve (class in molass_legacy.SecTheory.ConformanceDemo) SecConformance (class in molass_legacy.Optimizer.SecConformance) SecEstimator (class in molass_legacy.SecTheory.SecEstimator) SecInfo (class in molass_legacy.SecTheory.LocalOptimizer) SecInspection (class in molass_legacy.Optimizer.SecInspection) seconds_to_datetime() (in module molass_legacy.KekLib.TimeUtils) SecSimulator (class in molass_legacy.SecTheory.SecSimulator) see() (Table method) seem_to_be_manually_trimmed() (in module molass_legacy.Trimming.TrimmingInfo) select() (DraggablePoints method) (FileEntry method) (FileNodeEntry method) (FolderEntry method) select_added_rows() (PilatusImageInfoTable method) select_adj_folder() (EntryFrame method) select_all_rows() (PilatusImageInfoTable method) select_autorg_path() (SettingsDialog method) select_best_enantiomer() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) select_best_enantiomers() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) select_data_array() (PilatusImageInfoTable method) select_default_params() (TwoParamAnalysis method) select_demo_ranges_for_gd() (PeakSetSelector method) select_font() (DeveloperOptionsDialog method) select_hopeful_init_params() (SimultaneousSolver method) select_in_folder() (EntryFrame method) select_log_file() (EntryFrame method) select_mask_file() (EntryFrame method) select_one_pair() (DualPairSelector method) select_peakset() (PeakSetSelector method) select_row() (FileInfoTable method) (TkMiniTable method) select_syn_folder() (EntryFrame method) selection() (ExcelComClient method) selection_anchor() (Table method) selection_clear() (Table method) selection_includes() (Table method) selection_set() (Table method) send_command() (Window method) send_notify_gmail() (in module molass_legacy.KekLib.Gmail) send_stop() (in module molass_legacy.KekLib.ProgressInfo) separate_eoii_type_tracer() (OptStrategyDialog method) separate_fit() (QuadMM method) serial_folder_walk() (in module molass_legacy.DevelUtils.FolderWalkers) (in module molass_legacy.SerialAnalyzer.DataUtils) serial_np_loadtxt() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) SerialControlInfo (class in molass_legacy.SerialAnalyzer.SerialControlInfo) SerialController (class in molass_legacy.SerialAnalyzer.SerialController) SerialData (class in molass_legacy.SerialAnalyzer.SerialData) SerialDataLoader (class in molass_legacy.SerialAnalyzer.SerialDataLoader) SerialExecuter (class in molass_legacy.SerialAnalyzer.SerialController) serialize() (in module molass_legacy.Optimizer.SettingsSerializer) serialize_for_optimizer() (in module molass_legacy.Optimizer.SettingsSerializer) SerialXrayScattering (class in molass_legacy.SerialAnalyzer.SphericalModel) (class in molass_legacy.SerialAnalyzer.SphericalModelNew) set() (Annotation3D method) (ArrayVar method) (Arrow3D method) (LastMessage method) (SharedString method) (Table method) (TtkScale method) set_adjust_frame() (ElutionMapperCanvas method) set_analysis_range() (SerialExecuter method) set_analysis_ranges() (in module molass_legacy.SerialAnalyzer.AnalyzerUtil) set_anim_params() (EghMixture method) (EmgMixture method) (GssMixture method) set_annotation_lines() (Inset2Din3D method) set_area_proportions() (UnifiedDecompResult method) set_atsasl_availability() (EnvInfo method) set_baseplane_params_as_a_temp_fix() (MicrofluidicElution method) set_basic_buttons() (ElutionMapperCanvas method) set_better_geometry() (AllParameters method) set_C_matrix() (UnknownControlPanel method) set_cancel_mode() (Analyzer method) set_cleanup() (CleanerThread method) set_comments() (IntensityData method) set_composite() (BasicOptimizer method) set_conc_depend() (PreviewButtonFrame method) set_consistent_base() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.ProbDataUtils) (in module molass_legacy.Prob.ProbDensityUtils) (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils) set_control_data() (SerialExecuter method) set_controller_env() (Analyzer method) set_correponding_point() (AutoRestrictor method) set_ctrl_key_state() (in module molass_legacy.KekLib.ControlKeyState) set_cubic_limits() (EdPlotter method) set_data() (Image method) (OutlineFigure method) (SerialData method) set_data_label() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) set_default_analysis_range_info() (in module molass_legacy.DataStructure.AnalysisRangeInfo) set_default_bookfont() (in module molass_legacy.Reports.DefaultFont) set_default_bookfont_com() (in module molass_legacy.Reports.DefaultFont) set_default_ends() (PeakRegion method) set_default_font() (in module molass_legacy.Reports.DefaultFont) set_default_grouping() (GroupingMatrix method) set_default_params() (in module molass_legacy.Microfluidics.MethodFileSimulator) set_delayed_off() (Model method) set_demo_info() (JobStateCanvas method) (JobStateInfo method) set_dev_setting() (in module molass_legacy.SerialAnalyzer.DevSettings) set_devel_info() (in module molass_legacy.Synthesizer.Development) set_dictionary() (PersistentInfo method) (PersistentPy method) set_dpi_aware() (in module molass_legacy.KekLib.DpiAware) set_elution_curve() (MatrixData method) (UvData method) (XrayData method) set_error() (FileNodeEntry method) (ProgressInfo method) set_estimator() (SdmParams method) set_evaluator() (FitRecord method) set_event_handler() (Inset2Din3D method) set_excel_availability() (EnvInfo method) set_exclude() (FileInfoTable method) set_exe_array() (in module molass_legacy.ATSAS.AutoRg) set_ext() (Image method) set_fit_res_just_from_peaks() (ElutionDecomposer method) set_flow_changes_as_a_temp_fix() (MicrofluidicElution method) set_from_opposite_data_info() (DataRestrictor2dFrame method) set_func_code_text() (AdvancedFrame method) set_geometry() (ExtrapolSolverDialog method) (GradualRegionAnalysis method) (VariedPropAnalysis method), [1] set_global_env_info() (in module molass_legacy.Env.EnvInfo) set_global_opts() (in module molass_legacy.KekLib.DebugPlot) set_gpu_availability() (EnvInfo method) set_guard_for_three_state_model() (PreviewButtonFrame method) set_guinier_null_result() (SimpleGuinier method) set_guinier_result() (SimpleGuinier method) set_header() (Image method) set_icon() (in module molass_legacy.KekLib.TkSupplements) set_info() (OptimalTrimming method) (PreliminaryRecognition method) set_init_info() (JobStateInfo method) set_init_lims() (Canvas3D method) set_inspection_mode() (FullOptDialog method) set_intensity_array() (SerialData method) set_ivector_etcetera() (SerialData method) set_known_peak_info() (ExtrapolationSolver method) set_layout() (GuinierAnalysisResultBook method) set_layout_large() (in module molass_legacy.Reports.ZeroExtrapolationResultBook) set_layout_small() (in module molass_legacy.Reports.ZeroExtrapolationResultBook) set_lrf_src_args1() (FullBatch method) set_major_infos() (ElutionCurve method) set_mapper() (JudgeHolder method) set_mapper_hook() (Analyzer method) set_mapper_opt_params() (in module molass_legacy.Mapping.MappingParams) set_mask() (in module molass_legacy.Synthesizer.SynthesizerSettings) (PilatusImage method) set_mc_vector() (SerialData method) set_mode_and_get_flags() (in module molass_legacy.KekLib.OurSubprocess) set_moment_trimming_info() (in module molass_legacy.Trimming.MomentTrimming) set_new_params() (ModelEvaluator method) set_num_selected_rows() (PilatusImageInfoTable method) set_offsets() (SerialData method) set_offsets_from_md() (SerialData method) set_opt_params() (ElutionMapper method) set_optimize_callback() (ElutionMapper method) set_param_hint() (Model method) set_params() (FlowSimulator method) (MethodFileSimulator method) (SimpleTutorial method) (UnfoldingTutorial method) set_params_addr() (ParamsSheetBase method) set_params_scale() (BasicOptimizer method) set_params_without_book() (FlowSimulator method) set_peak_dependent_info() (ElutionCurve method) set_peak_ends_with_traditional_infos() (PeakRegion method) set_peak_eval_ranges() (ElutionMapper method) set_peak_info() (SimpleGuinier method) set_plot_data() (GuinierStartSelector method) set_plot_env() (in module molass_legacy.KekLib.DebugPlot) set_preference() (in module molass_legacy.Synthesizer.Preferences) set_prerecog_proxy() (SerialData method) set_preview_survey() (Analyzer method) set_primary_info() (ElutionCurve method) set_procstate() (SharedInfo method) set_proportions() (UnifiedDecompResult method) set_radii() (PDB2MRC method), [1] set_range_info() (ElutionMapperPlotter method) set_reply() (LastMessage method) set_restrict_info() (PreliminaryRecognition method) set_restriction() (MatrixData method) (MeasuredData method) (UvData method) (XrayData method) set_result() (LS_Rg method) set_sd_update_callback() (ElutionMapper method) set_selection() (ParamsSelector method) (ParamsSheetBase method) set_setting() (in module molass_legacy.AutorgKek.Settings) (in module molass_legacy.Synthesizer.SynthesizerSettings) set_setting_for_baseline_correction() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) set_shift_key_state() (in module molass_legacy.KekLib.ControlKeyState) set_slider_specs() (SecSimulator method) set_small_xlim() (BackgroundMaker2dFrame method) (ElutionCurvePicker2dFrame method) set_source() (ListingFrame method) set_subs() (QuadMM method) set_sync_info() (ScrolledFrame method) set_target_position() (Arrow method) set_target_positions() (Circles method) (TextGroup method) set_target_vertices() (Parallelogram method) set_title() (MplClone method) set_toggle_text() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) set_trace_xy() (TwoParamAnalysis method) set_tracer() (SaferSpinbox method) set_trimming_info_list() (in module molass_legacy.Trimming.TrimmingInfo) set_uv_lpm_option() (ElutionMapperAdjuster method) set_uv_window() (QmmWindowSetting method) set_view_to_bottom() (PilatusImageInfoTable method) set_view_widths() (JobStateCanvas method) set_visible() (Animation method) (TextGroup method) set_wider_ends() (PeakRegion method) set_width_adj_btn_text() (ElutionCurvePicker2dFrame method) set_window_pos() (in module molass_legacy.KekLib.TestUtils) set_work_folder() (BackRunner method) set_x() (EdmParams method) set_x_curve_update_callback() (ElutionMapper method) set_xr_bpa_option() (ElutionMapperAdjuster method) set_xr_data() (SharedInfo method) set_xr_dependents() (DataSet method) setCurrent() (DDList method) (DraggableListbox method) setFileDateTimes() (in module molass_legacy.KekLib.FileTimeUtils) setp() (in module molass_legacy.KekLib.DebugPlot) SettingsDialog (class in molass_legacy.SerialAnalyzer.SettingsDialog) several_studies() (in module molass_legacy.Simulative.SimulationCushion) several_studies_impl() (in module molass_legacy.Simulative.SeveralStudies) sgd() (MF method) shannon_channels() (in module molass_legacy.Theory.PbMoore1980) (Sasrec method), [1] shannon_intensities() (in module molass_legacy.Theory.PbMoore1980) SharedArray (class in molass_legacy.KekLib.SharedArray) (class in molass_legacy.KekLib.SharedArrayTry) SharedArrays (class in molass_legacy.KekLib.SharedArrays) SharedInfo (class in molass_legacy.Processes.SharedInfo) SharedMemory (class in molass_legacy.KekLib.OurMmap) (class in molass_legacy.KekLib.OurMultiprocessing) SharedString (class in molass_legacy.Processes.SharedInfo) shift_copy() (EmgPeak method) shift_editor_ranges() (in module molass_legacy.DataStructure.RangeInfo) shift_paired_ranges() (in module molass_legacy.DataStructure.AnalysisRangeInfo) shift_range_from_to_by_x() (in module molass_legacy.DataStructure.AnalysisRangeInfo) shift_range_pairs() (in module molass_legacy.Mapping.PeakCurve) shifted_baseline_ok() (Absorbance method) shifted_phi() (in module molass_legacy.SecTheory.SecCF) shiftSelection() (DDList method) (DraggableListbox method) shortened_list() (in module molass_legacy.Tools.AutoExecManager) show() (AbsorbanceSaveDialog method) (AbsorbanceViewer method) (AbsorbanceViewerPub method) (AffineDemoDialog method) (AllParameters method) (AlmergeAnalyzerDialog method) (AlmergePlotter method) (AqBqSimilarityDialog method) (AutoExecManager method) (AutomationDialog method) (AverageMakerDialog method) (AverageSubtractorDialog method) (BeamAnimDialog method), [1], [2], [3] (BicomponentSimulator method) (BoundaryView method) (BoundsInspection method) (BpaInspector method) (BpoDependencyDemo method) (CanvasDialog method) (CanvasFrame method) (CdInspectionDailog method) (CheckEnvDialog method) (ComplementaryView method) (ConcNormalizerDialog method) (ConcOptsDialog method) (ConformanceDemo method) (CrysolResultsEntry method) (CurveSaverDialog method) (CustomMessageBox_ method) (DebugCanvas method) (DebugDialog method) (DebugPlot method) (DebugPlotter method) (DecompDummyDialog method) (DecompEditorDialog method) (DelayAdjuster method) (Demo method) (DemoDialog method) (DenoiseFigures method) (DenssFitDataDialog method) (DenssGuiDialog method) (DenssManagerDialog method) (DeveloperOptionsDialog method) (Dialog method) (DriftLinearModelDialog method) (DualSpace method) (EditCanvas method) (EdViewer method) (ElutionMapperAnimation method) (ElutionMapperAnimator method) (ElutionMapperCanvas method) (ElutionMapperPlotter method) (ElutionModelEditor method) (ElutionTrimmingDialog method) (ExtrapolationAnimationDialog method) (ExtrapolSolverDialog method) (FactorCurvePlot method) (FolderEntryDialog method) (FolderInfoPanel method) (FullOptDialog method) (FunctionChanger method) (FunctionDebugger method) (FvScoreDetails method) (FvScoreInspecor method) (GammaVisualizer method) (GdAnimationDialog method) (GradualRegionAnalysis method) (GuinierKratkyPlots method) (GuinierProofPlot method) (GuinierRegionInspector method) (GuinierStartSelector method) (in module molass_legacy.KekLib.DebugPlot) (IndividualSubtractorDialog method) (InspectionInAnglesDialog method) (InvestigatorDialog method) (LinkedToplevel method) (LinTranAnim method) (LogDiffDialog method) (LogGuinierKratkyPlotter method) (LpmInspector method), [1] (ManagerDialog method) (ManualAdjuster method) (ManualDecomposer method) (MdViewer method) (MockMain method) (ModifyStateDialog method) (MpInverseAnim method) (MpInverseAnim3D method) (MplCanvas method) (MwIntegrityPlot method) (MwRgFigure method) (NoExcelWarningDialog method) (OptStrategyDialog method) (OutlineViewerDialog method) (ParameterTransitionPlot method) (ParamsInspection method) (ParamsSelector method) (PdbCrysolRouteDialog method) (PdbFetcherDialog method) (PeakAsymmetry method) (PeakEditor method) (Plotter method) (PreparationProgress method) (PreprocessDialog method) (PreSyncViewer method) (PreviewResultSaverDialog method) (ProgressDialog method) (ProgressInfoDialog method) (ProgressMinDialog method) (ProofViewer method) (PropOptimizerProgress method) (PropOptimizerResult method) (Qmm3dFigure method) (QmmOptionsDialog method) (QmmResultSaverDialog method) (QmmWindowSetting method) (RangeEditorDialog method) (RangeInspectorDialog method) (RankInspectionFigure method) (RankView method) (RankViewParamsDialog method) (RdAnim method) (ResidualView method) (ResultFolderSelector method) (RgAnalysisDialog method) (RgCurveComputerDialog method) (RgVisibleFigure method) (SaxsSimulator method) (Scattering3dPlotDialog method) (Scattering3dSimpleDialog method) (ScatteringCurvePlotter method) (ScatteringCurveViewer method) (ScatteringSaveDialog method) (ScoreTransition method) (SecConformance method) (SecInspection method) (SecSimulator method) (SimpleGuinierScoreDialog method) (SimpleTutorial method) (SimulatedExtrapolationDialog method) (SpecialistOptionsDialog method) (SpikeDialog method), [1], [2], [3], [4], [5] (SpotDebugger method) (SsdcAnalysis method) (StrategyEditor method) (SvdAnimation method) (SvdDataSaverDialog method) (SvdTutorial method), [1] (SvdViewer method) (TestDialog method) (TesterDialog method) (TesterSimple method) (ThreeDimErrorViewer method) (ThreeDimViewer method) (TrimmingResultDialog method) (TwoParamAnalysis method) (TypeInfoPanel method) (UnfoldingTutorial method) (UpdateDailog method) (VariedPropAnalysis method), [1] (VoxelFFT method)

show_2p_analysis() (JobStateCanvas method) show_abnomality_check_dialog() (GuiSecToolsMenu method) (OutlineFigure method) show_absorbance_figure() (ElutionMapperCanvas method) (SettingsDialog method) (SpecialistOptionsDialog method) show_absorbance_figure_util() (in module molass_legacy.UV.AbsorbancePlot) show_absorbance_viewer() (ElutionMapperCanvas method) show_adhoc_figure() (JobStateCanvas method) show_adhoc_figure_impl() (in module molass_legacy.Optimizer.AdhocFigure) show_affine_transformation() (GuiTutorialsMenu method) show_and_log_if_unavailable() (EnvInfo method) show_animation() (ElutionMapperAdjuster method) (ScatteringBaseline method) (SpikeDialog method), [1], [2] show_asc_dsc_difference() (in module molass_legacy.Optimizer.AscDscDifference) (JobStateCanvas method) show_automated_execution() (V2Menu method) show_average_maker() (GuiMctToolsMenu method) (GuiSecToolsMenu method) show_average_subtractor_dialog() (GuiMctToolsMenu method) (GuiSecToolsMenu method) show_backgroud_maker_dialog() (AverageSubtractorDialog method) show_ball() (SaxsSimulator method) show_boundary_view() (JobStateCanvas method) show_bounds() (PeakEditor method) show_bounds_indpection() (FunctionDebugger method) show_bpo_dependency_demo() (GuiTutorialsMenu method) show_call_stack() (in module molass_legacy.KekLib.DebugUtils) show_cdi_dialog() (ElutionMapperPlotter method) (UnknownControlPanel method) show_comments() (ResultGui method) show_compare_to_pdb() (ComplementaryView method) show_complementary_view() (JobStateCanvas method) (PeakEditor method) show_conc_normalizer_dialog() (GuiMctToolsMenu method) show_conc_opts_dialog() (PreviewButtonFrame method) show_conformance() (ParamsInspection method) show_conjugate_gradient() (GuiTutorialsMenu method) show_cormap_maker() (GuiSecToolsMenu method) show_cpd_decompose() (PeakEditor method) show_curve() (ElutionMapperCanvas method) show_datarange_dialog() (OutlineFigure method) show_debug_dnd() (TrimmingResultDialog method) show_decomp_editor() (ElutionMapperCanvas method) show_denss_dialog() (GuiDenssToolsMenu method) (UnknownControlPanel method) show_denss_gui() (ExtrapolationDenssMenu method) (QmmDenssMenu method) show_denss_manager() (DenssGuiDialog method) (ExtrapolationDenssMenu method) (GuiDenssToolsMenu method) (QmmDenssMenu method) show_developer_dialog() (GuiDevelopmentMenu method) show_dialog() (in module molass_legacy.Test.TesterSimple) (LrfResultPool method) (SimpleGuinierAnalyzer method) show_diff_mode_tracer() (RangeInspectorDialog method) show_disc() (SaxsSimulator method) show_ed_viewer() (DenssGuiDialog method) (ExtrapolationDenssMenu method) (GuiDenssToolsMenu method) (QmmDenssMenu method) show_editcanvas() (PeakEditor method) show_egh_qmm_dialog() (QmmMenu method) show_ellipsoid() (SaxsSimulator method) show_elution_curve_picker() (GuiMctToolsMenu method) (GuiSecToolsMenu method) show_emg_qmm_dialog() (QmmMenu method) show_error_data() (PreSyncViewer method) (ThreeDimViewer method) show_extra_info() (DataRestrictor2dFrame method) show_extrapolation_simulation() (GuiTutorialsMenu method) show_figs() (in module molass_legacy.Tutorials.LinearEquations) show_function_debugger() (JobStateCanvas method) show_fv_chart() (VariedPropAnalysis method), [1] show_fvscore_inspector() (JobStateCanvas method) show_gradual_analysis() (DataRestrictor2dFrame method) show_guide_text() (ScatteringCurvePlotter method) show_guinier_deviation() (in module molass_legacy.GuinierTools.GuinierDeviationTester) (JobStateCanvas method) show_guinier_inspector() (DataRestrictor2dFrame method) show_guinier_kratky_plots() (RangeInspectorDialog method) show_guinier_kratky_view() (ComplementaryView method) show_guinier_kratky_view_impl() (ComplementaryView method) show_guinier_viewer() (Scattering3dPlotFrame method) show_hide_difference() (ElutionMapperPlotter method) show_individual_subtractor_dialog() (GuiMctToolsMenu method) show_it_at_a_glance() (DataRangeDialog method) show_lintran_tutorial() (GuiTutorialsMenu method) show_manager_dialog() (in module molass_legacy.DENSS.DenssManagerDialog) show_manager_dialog_impl() (in module molass_legacy.MultiProc.ManagerDialog) show_manual_adjuster() (ElutionMapperAdjuster method) (GuiSecToolsMenu method) show_mapped_result_impl() (in module molass_legacy.Batch.BatchMappingImpl) show_mapping_proof() (PeakMapper method) show_matrix_inverse() (GuiTutorialsMenu method) show_mf_tutorial() (GuiTutorialsMenu method) show_moore_penrose_inverse() (GuiTutorialsMenu method) show_mw_integrity() (JobStateCanvas method) show_mwrg_figure() (OptStrategyDialog method) (SecSimulator method) show_norm_pameters() (FunctionDebugger method) show_optimizer_dialog() (in module molass_legacy.V2PropOptimizer.PropOptimizerDialogs) show_parameter_transition() (V2Menu method) show_parameter_transition_impl() (in module molass_legacy.Optimizer.ParameterTransition) show_parameters() (FunctionDebugger method) (ModifyStateDialog method) show_params() (JobStateCanvas method) (PeakEditor method) show_params_inspect() (TwoParamAnalysis method) show_params_selector() (TwoParamAnalysis method) show_pdb_dialog() (SaxsSimulator method) show_peak_editor() (V2Menu method) show_peak_editor_impl() (in module molass_legacy.Optimizer.OptimizerUtils) show_popup_menu() (DataRestrictor2dFrame method) (PeakEditor method) (SecInspection method) (TrimmingResultDialog method) (VariedPropAnalysis method), [1] show_popup_menu_0() (JobStateCanvas method) show_popup_menu_1() (JobStateCanvas method) show_popup_menu_devel() (JobStateCanvas method) show_popup_menu_prog() (JobStateCanvas method) show_prepare() (Plotter method) show_progress() (in module molass_legacy.KekLib.OnTheFlyUtils) show_proof_plot() (ResultGui method) show_properties() (PilatusImageInfoTable method) show_psd_simulation() (ModelSelectFrame method) show_qmm_dialog() (QmmMenu method) show_qmm_options_dialog() (QmmMenu method) show_qmm_window_setting_dialog() (QmmMenu method) show_quality_warning() (ExtrapolSolverDialog method) (RangeInspectorDialog method) show_range_editor_dialog() (ElutionMapperCanvas method) show_range_inspector() (RangeSpecFrame method) (SpecPanel method) (UnknownControlPanel method) show_rankview() (RankViewMenu method) show_rdr_chart() (VariedPropAnalysis method), [1] show_reset_from_log_dialog() (DecompEditorDialog method) (RangeEditorDialog method) show_residual_view() (JobStateCanvas method) show_result_animation() (V2Menu method) show_result_animation_impl() (in module molass_legacy.Optimizer.ResultAnimation) show_result_folder_selector() (V2Menu method) show_result_folder_selector_impl() (in module molass_legacy.Optimizer.ResultFolderSelector) show_result_viewer() (V2Menu method) show_results() (ResultGui method) show_rg_visible_figure() (JobStateCanvas method) show_rod() (SaxsSimulator method) show_save_dialog() (Scattering3dPlotFrame method) (SvdFrame method) show_saxs_simulator() (ExtrapolationDenssMenu method) (GuiDenssToolsMenu method) (QmmDenssMenu method) show_scaled_cormap() (GuiSecToolsMenu method) show_scattering_curve_plotter() (GuiSecToolsMenu method) show_scattering_figure() (ElutionMapperCanvas method) show_score_details() (JobStateCanvas method) (PeakEditor method) show_sdm_investigator() (JobStateCanvas method) show_sdm_lrf_investigator() (JobStateCanvas method) show_sec_conformance() (JobStateCanvas method) (SecConformance method) show_settings_dialog() (GuiSettingsMenu method) show_simple_3d_view() (ComplementaryView method) (in module molass_legacy.Tools.SimpleThreedView) (JobStateCanvas method) show_simulator() (ParamsInspection method) show_specialist_dialog() (GuiSettingsMenu method) show_ssdc_analysis() (GuiSecToolsMenu method) show_strategy_editor() (OptStrategyDialog method) show_svd_animation() (GuiTutorialsMenu method) show_svd_tutorial_2d() (GuiTutorialsMenu method) show_svd_tutorial_3d() (GuiTutorialsMenu method) show_svd_viewer() (GuiSecToolsMenu method) show_test_dialog() (in module molass_legacy.Test.TestUtils) show_tester_dialog() (GuiDevelopmentMenu method) show_the_other() (SvdViewer method) show_this_figure() (JobStateCanvas method) show_this_figure_impl() (in module molass_legacy.Optimizer.XrStateFigure) show_threedim_dialog() (ElutionMapperCanvas method) show_torus() (SaxsSimulator method) show_trimming_figure() (OptStrategyDialog method) show_view_params_dialog() (RankViewMenu method) show_vp_analysis() (AdvancedFrame method) (JobStateCanvas method) show_vp_analysis_impl() (in module molass_legacy.Selective.VariedPropAnalysis) show_weights_performance() (in module molass_legacy.Optimizer.FvSynthesisOptimizer) show_zx_preview() (PreviewButtonFrame method) show_zx_preview_using_pool() (PreviewButtonFrame method) (V1PreviewAdapter method) showerror() (in module molass_legacy.KekLib.CustomMessageBox) (in module molass_legacy.KekLib.OurMessageBox) showinfo() (in module molass_legacy.KekLib.CustomMessageBox) (in module molass_legacy.KekLib.OurMessageBox) showwarning() (in module molass_legacy.KekLib.CustomMessageBox) (in module molass_legacy.KekLib.OurMessageBox) shrinkwrap_by_density_value() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) shrinkwrap_by_volume() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) shutdown_machine() (in module molass_legacy.KekLib.Shutdown) sigmoid() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) (in module molass_legacy.Optimizer.FvScoreConverter) (in module molass_legacy.Trimming.Sigmoid) sigmoid_find_x_value_given_y() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) sigmoid_inv() (in module molass_legacy.Trimming.Sigmoid) SigmoidChain (class in molass_legacy.Trimming.SigmoidChain) sign() (in module molass_legacy.MD.code1) SimData (class in molass_legacy.Conc.SimData) similar_frames() (ScatterAnalysis method) SimInfo (class in molass_legacy.Microfluidics.FlowSimulator) simple_pdf() (in module molass_legacy.SecTheory.BasicProofs) simple_phi() (in module molass_legacy.SecTheory.SecCF) simple_plot() (in module molass_legacy.Elution.CurveUtils) simple_plot_pair_curves() (in module molass_legacy.Mapping.PeakMapper) SimpleFlowChangeProxy (class in molass_legacy.Microfluidics.MicrofluidicElution) SimpleGuinier (class in molass_legacy.GuinierAnalyzer.SimpleGuinier) SimpleGuinierAnalyzer (class in molass_legacy.GuinierAnalyzer.SimpleGuinierAnalyzer) SimpleGuinierAnimation (class in molass_legacy.GuinierAnalyzer.SimpleGuinierAnimation) SimpleGuinierScoreDialog (class in molass_legacy.GuinierAnalyzer.SimpleGuinierScoreDialog) SimpleGuinierTester (class in molass_legacy.GuinierAnalyzer.SimpleGuinierTester) SimpleSec (class in molass_legacy.SecTheory.BasicModels) SimpleSecParams (class in molass_legacy.ModelParams.SimpleSecParams) SimpleSolver (class in molass_legacy.Microfluidics.SimpleSolver) SimplestMapper (class in molass_legacy.Mapping.SimplestMapper) SimpleTutorial (class in molass_legacy.Microfluidics.SimpleTutorial) SimpleUnfolding (class in molass_legacy.Microfluidics.SimpleUnfolding) simply_safe_sprintf() (in module molass_legacy.KekLib.NumpyUtils) simply_to_3d() (in module molass_legacy.KekLib.OurMatplotlib3D) simulate() (DriftLinearModel method) (in module molass_legacy.MD.NzDemo) simulated_svd_error_propagation_plot() (in module molass_legacy.Decomposer.ErrorAnalysis) SimulatedAnnealing (class in molass_legacy.KekLib.SimulatedAnnealing) (class in molass_legacy.SerialAnalyzer.SimulatedAnnealing) SimulatedExtrapolation (class in molass_legacy.SerialAnalyzer.SimulatedExtrapolation) SimulatedExtrapolationDialog (class in molass_legacy.SerialAnalyzer.SimulatedExtrapolation) simulation_bridge() (in module molass_legacy.Simulative.SimulationBridge) simulation_bridge_impl() (in module molass_legacy.Simulative.SimulationBridge) SimultaneousSolver (class in molass_legacy.Rgg.MostSimultaneous) single_float() (in module molass_legacy.Mapping.ManualAdjuster) single_pore_cf() (in module molass_legacy.SecTheory.RealisticProof) single_pore_elution() (in module molass_legacy.SecTheory.BasicModels) single_pore_height() (in module molass_legacy.SecTheory.BasicModels) single_pore_pdf() (in module molass_legacy.SecTheory.BasicModels) (in module molass_legacy.SecTheory.SinglePoreNonCf) single_screenshot() (in module molass_legacy.KekLib.TestUtils) single_site_cf() (in module molass_legacy.SecTheory.Cavazzini1999) SingleComponent (class in molass_legacy.Mapping.SingleComponent) SingleGmm (class in molass_legacy.Gmm.SingleGmm) SingleInstance (class in molass_legacy.KekLib.SingleInstance) SinglePoreSolver (class in molass_legacy.SecTheory.SinglePoreNonCf) SizableEntry (class in molass_legacy.KekLib.TkSizableWidgets) SizableLabel (class in molass_legacy.KekLib.TkSizableWidgets) size (SharedMemory property), [1] skip_to_next_trial() (FullOptDialog method) sklearn_nmf_spike() (in module molass_legacy.Decomposer.ExistingNmf) slice_consecutives() (in module molass_legacy.KekLib.SliceUtils) slice_length() (in module molass_legacy.Mapping.PeakMapper) slider0_egh_update() (ConformanceDemo method) (PeakAsymmetry method) slider0_update() (ConformanceDemo method) (PeakAsymmetry method) slider1_egh_update() (ConformanceDemo method) (PeakAsymmetry method) slider1_update() (ConformanceDemo method) (PeakAsymmetry method) slider2_egh_update() (ConformanceDemo method) (PeakAsymmetry method) slider2_update() (ConformanceDemo method) (PeakAsymmetry method) slider3_egh_update() (ConformanceDemo method) (PeakAsymmetry method) slider3_update() (ConformanceDemo method) (PeakAsymmetry method) slider_update_cleaner() (ConformanceDemo method) (PeakAsymmetry method) SlimButton (class in molass_legacy.KekLib.TkSupplements) SMALL_DIFF (in module molass_legacy.SerialAnalyzer.OptimalSmoothing) smb_pdf() (in module molass_legacy.Prob.SmbMixture) SmbMixture (class in molass_legacy.Prob.SmbMixture) SmcModel (class in molass_legacy.Particles.SmcModel) SmcSolver (class in molass_legacy.Particles.SmcSolver) SmcTrial_impl() (in module molass_legacy.Tools.EmbedCushion) smooth() (in module molass_legacy.KekLib.SciPyCookbook) smooth_demo() (in module molass_legacy.KekLib.SciPyCookbook) smoothed_curve_y() (in module molass_legacy.Elution.CurveUtils) smoothed_error() (in module molass_legacy.Decomposer.ErrorAnalysis) Smoother (class in molass_legacy.AutorgKek.LinRegSmoother) SmoothFactorizer (class in molass_legacy.Extrapolation.SmoothFactorizer) SmoothnessPenalty (class in molass_legacy.Extrapolation.SmoothnessPenalty) SmoothSpline (class in molass_legacy.AutorgKek.SmoothSpline) snap() (Camera method) SolidEllipsoidRev (class in molass_legacy.Theory.JsPedersen1997) SolidGrain (class in molass_legacy.Stochastic.ColumnSimulation) SolidSphere (class in molass_legacy.Theory.SolidSphere) solve() (AlMergeSolver method) (BaselineOptimizer method) (BasePlane method) (BasicOptimizer method) (BiComponentSolver method) (BoundedLrfSolver method) (DriftAnalyzer method) (ExSolver method) (FixedBaselineOptimizer method) (in module molass_legacy.Rank.Synthesized) (IteratedWLS method) (IterativeLrfSolver method) (MpInverse method) (NaiiveLrfSolver method) (NormMinizerSmoothed method) (ScatteringBasecomposite method) (ScatteringBasecurve method) (ScatteringBaseline method), [1] (ScatteringBasespline method) (SimpleSolver method) (SimpleTutorial method) (SimultaneousSolver method) (SmoothFactorizer method) (StrategicOptimizer method) (ThreeStateDimerSolver method) (ThreeStateMonomerSolver method) (TwoStateSolver method) (UnfoldingTutorial method) (UvBaselineEstimator method) (UvBaseSolver method) solve_an_elution() (WlsDecomposer method) solve_base_plane() (LowRankSolver method) solve_bottomplane_LB() (Absorbance method) solve_bottomplane_LPM() (Absorbance method) solve_Bq() (in module molass_legacy.ICIS.IcisDemo) solve_by_annealing() (AutorgKek method) solve_C() (MatrixFactorization method) solve_chol() (in module molass_legacy.Prob.pylib_dphem) solve_irregular() (SimpleTutorial method) (UnfoldingTutorial method) solve_P() (MatrixFactorization method) solve_params() (EghMixture method) (EmgMixture method) (GssMixture method) (SmbMixture method) solve_plot() (ExtrapolSolverDialog method) (UnknownControlPanel method) solve_quadratic() (ScatteringBasecurve method) solve_range() (LrfSolver method) solve_regular() (UnfoldingTutorial method) solve_regular1() (SimpleTutorial method) solve_regular2() (SimpleTutorial method) solve_this_range() (RangeInspectorDialog method) solve_unknowns() (ExtrapolSolverDialog method) sort_fit_recs() (in module molass_legacy.Decomposer.FitRecord) spans() (Table method) SpecialistOptionsDialog (class in molass_legacy.SerialAnalyzer.SpecialistOptions) SpecPanel (class in molass_legacy.RangeEditors.DecompSpecPanel) sphere() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) sphere_radius_from_volume() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) sphere_volume_from_radius() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) sphere_xyz() (in module molass_legacy.Theory.SpherePlot) spherical_cap_volume() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) spherical_to_euler() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) spike() (in module molass_legacy.KekLib.LogicalExpression) (in module molass_legacy.KekLib.OurManim3D) (in module molass_legacy.Models.MomentFitting) (in module molass_legacy.Prob.EmgEstimation) (in module molass_legacy.QuickAnalysis.PreDecomposer) (in module molass_legacy.QuickAnalysis.RgDiffRatios) (in module molass_legacy.SecTheory.EdmSpike) (in module molass_legacy.SSDC.SsdcAnalysisSdm) (in module molass_legacy.Theory.BoundedLRF) (in module molass_legacy.Theory.Conjugate) (in module molass_legacy.Trimming.OptimalTrimming) (in module molass_legacy.Tutorials.MpInverseAnim3D) (in module molass_legacy.UV.Spike) spike_demo() (in module molass_legacy.Pomegranate.MappingGmmDecomposer) (in module molass_legacy.Prob.ClusteringUtils) (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.GssMixtureUtils) (in module molass_legacy.Prob.MixedElutionModel) (in module molass_legacy.Prob.SklMixtureUtils) (in module molass_legacy.Prob.SmbMixtureUtils) (in module molass_legacy.Rgg.MostSimultaneous) (in module molass_legacy.Rgg.RgRefiner) (in module molass_legacy.Rgg.UvAdjuster) (in module molass_legacy.SecTheory.FoleyDorseyEmg) (in module molass_legacy.SecTheory.HermansEmg) spike_demo_impl() (in module molass_legacy.Pomegranate.MappingGmmDecomposer) spike_demo_real() (in module molass_legacy.Pomegranate.MappingGmmDecomposer) spike_dialog() (in module molass_legacy.Prob.DualEghMixtureUtils) (in module molass_legacy.Prob.EghMixtureUtils) (in module molass_legacy.Prob.EmgMixtureUtils) (in module molass_legacy.Prob.QuadEghMixtureUtils) (in module molass_legacy.Prob.QuadEmgMixtureUtils) (in module molass_legacy.Prob.QuadMmUtils) SpikeDialog (class in molass_legacy.Prob.DualEghMixtureUtils) (class in molass_legacy.Prob.EghMixtureUtils) (class in molass_legacy.Prob.EmgMixtureUtils) (class in molass_legacy.Prob.QuadEghMixtureUtils) (class in molass_legacy.Prob.QuadEmgMixtureUtils) (class in molass_legacy.Prob.QuadMmUtils) spinbox_tracer() (BackgroundMaker2dFrame method) (DataRestrictor2dFrame method) (ElutionCurvePicker2dFrame method) (QmmWindowSetting method) (RangeSpecFrame method) (SettingsDialog method) (SpecPanel method) SplashScreen (class in molass_legacy.KekLib.SplashScreen) split() (ElutionBaseCurve method) (str method) split_as_unified_params() (BasicOptimizer method) (EdmParams method) (EghAdvansedParams method) (SdmParams method) split_bounds() (BasicOptimizer method) (EdmParams method) (EghParamsBase method) split_geometry() (in module molass_legacy.KekLib.TestTkUtils) (in module molass_legacy.KekLib.TkUtils) split_get_unified_sec_params() (EdmParams method) (EghAdvansedParams method) (SdmParams method) split_params() (EdmParams method) (EghAdvansedParams method) (EghParams method) (in module molass_legacy.SecTheory.LocalOptimizer) (RealisticCf method) (SdmParams method) (SimultaneousSolver method) (SinglePoreSolver method) split_params_simple() (BasicOptimizer method) (EdmParams method) (EghAdvansedParams method) (EghParams method) (SdmParams method) splitlines() (str method) SpotDebugger (class in molass_legacy.Tools.SpotDebugger) SRR (class in molass_legacy.Rank.SRR) srr_turtorial() (in module molass_legacy.Rank.SrrTutor) SsdcAnalysis (class in molass_legacy.SSDC.SsdcAnalysis) St() (Sasrec method), [1] standard_setup() (in module molass_legacy.SerialAnalyzer.SerialTestUtils) StandardProcedure (class in molass_legacy.Batch.StandardProcedure) start (range attribute) start() (BlinkingFrame method) (BlinkingLabel method) (CleanerThread method) (MmAnimator method) (ModifyStateDialog method) (SerialController method) start_blink() (ElutionMapperAdjuster method) start_controller() (Analyzer method) start_debugger() (FunctionDebugger method) start_fetch_thread() (PdbFetcherDialog method) start_full_automatic_control() (ElutionMapperCanvas method) start_full_automatic_control_impl() (ElutionMapperCanvas method) start_install() (UpdateDailog method) start_interactive() (ConformanceDemo method) (PeakAsymmetry method) (SecInspection method) start_load_data() (InputManager method) (InputTeller method) start_next_trial() (FullOptDialog method) start_optimizer() (PropOptimizerProgress method) start_preparation() (PreparationProgress method) start_prepare() (InputData method) start_rg_curve_thread() (PeakEditor method) start_step_mode() (SpikeDialog method), [1], [2] startswith() (str method) StateSequence (class in molass_legacy.Optimizer.StateSequence) stationary_move() (Particle method) StcAdjuster (class in molass_legacy.ModelParams.StcAdjuster) StcEstimator (class in molass_legacy.Estimators.StcEstimator) StcParamsSheet (class in molass_legacy.ModelParams.StcParamsSheet) stderror_score100() (in module molass_legacy.SerialAnalyzer.LinearityScore) StdoutLogger (class in molass_legacy.KekLib.StdoutLogger) StdoutRedirector (class in molass_legacy.DENSS.DenssGui) (class in molass_legacy.Extrapolation.AutoRangeInspector) (class in molass_legacy.KekLib.StdoutRedirector) (class in molass_legacy.Pdb.PdbFetcherDialog) step (range attribute) step() (MmAnimator method) (regals method) stochastic() (in module molass_legacy.SecTheory.StochasticModels) stop (range attribute) stop() (BlinkingFrame method) (BlinkingLabel method) (ExcelTeller method) (InputTeller method) (MmAnimator method) stop_blink() (ElutionMapperAdjuster method) stop_check() (SerialExecuter method) (ZeroExtrapolator method) stop_drag() (PositionSynchronizer method) store_parameters_as_string() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.options) str (class in molass_legacy.DENSS.denss) str_for_source_code() (in module molass_legacy.KekLib.NoseUtils) StrategicOptimizer (class in molass_legacy.Optimizer.StrategicOptimizer) StrategyEditor (class in molass_legacy.Optimizer.StrategyEditor) StreamState (class in molass_legacy.KekLib.ProgressInfo) string2file() (in module molass_legacy.KekLib.DiffUtils) strip() (str method) Struct (class in molass_legacy.AutorgKek.QrgLimitsAdjuster) (class in molass_legacy.KekLib.BasicUtils) structure_factor() (in module molass_legacy.SimTools.HardSphere) StructureFactorBounds (class in molass_legacy.Optimizer.StructureFactorBounds) study1() (in module molass_legacy.CharFunc.CfDomainStudy) study2() (in module molass_legacy.CharFunc.CfDomainStudy) study_egh() (in module molass_legacy.CharFunc.PdfCfStudy) study_Gil_Pelaez() (in module molass_legacy.CharFunc.PdfCfStudy) study_phi() (in module molass_legacy.CharFunc.PdfCfStudy) study_phi_with_Witkovsky() (in module molass_legacy.CharFunc.PdfCfStudy) submit() (in module molass_legacy.DENSS.DenssManager) (in module molass_legacy.MultiProc.Manager) submit_all() (ExtrapolationDenssMenu method) (QmmDenssMenu method) submit_jobs() (DenssManagerDialog method) (ManagerDialog method) submit_to_denss_manager() (DenssGuiDialog method) subplots() (in module molass_legacy.KekLib.DebugPlot) subplots_adjust() (in module molass_legacy.KekLib.DebugPlot) subtract() (AverageSubtractorDialog method) (IndividualSubtractorDialog method) (SubtractorFrame method) subtract_impl() (in module molass_legacy.Microfluidics.DataSubtractor) SubtractorFrame (class in molass_legacy.Microfluidics.SubtractorFrame) success_callback() (DenssManager method) (Manager method) suggested_folders() (EntryFrame method) summary_book() (ExcelManager method) SummaryArgs (class in molass_legacy.Reports.SummaryExcelFormatter) SummaryBook (class in molass_legacy.Reports.SummaryBook) super_ticklabel() (ExcelLogChart method) SuperEditorFrame (class in molass_legacy.RangeEditors.SuperEditorFrame) SuperEditorInfo (class in molass_legacy.DataStructure.RangeInfo) survey_for_all_data() (in module molass_legacy.Extrapolation.ExtrapolationProof) survey_summary() (in module molass_legacy.Trimming.GradualRegionAnalysis) SvdAnimation (class in molass_legacy.Tutorials.SvdAnimation) SvdDataSaverDialog (class in molass_legacy.DataStructure.SvdDataSaver) SvdFrame (class in molass_legacy.DataStructure.SvdViewer) SvdTutorial (class in molass_legacy.DataStructure.SvdTutorial) (class in molass_legacy.Optimizer.SvdTutorial) SvdViewer (class in molass_legacy.DataStructure.SvdViewer) swap() (ListingFrame method) swapcase() (str method) switch_backend() (in module molass_legacy.KekLib.DebugPlot) sychrionize() (SecInspection method) sync_options_tracer() (ElutionMapperAdjuster method) synchronize() (in module molass_legacy.Prob.KL_Divergence) (RankView method) synchronize_position() (PositionSynchronizer method) synthesize() (in module molass_legacy.Optimizer.FvSynthesizer) (LrfResultPool method) synthesize_demo() (in module molass_legacy.Optimizer.FvSynthesizer) synthesized_data() (in module molass_legacy.Rank.Synthesized) synthesized_lrf() (in module molass_legacy.Theory.SynthesizedLRF) synthesized_lrf_spike() (in module molass_legacy.Theory.SynthesizedLRF) synthesizer_version_string() (in module molass_legacy.Synthesizer.AppVersion)

T

Table (class in molass_legacy.KekLib.TkTableWrapper) tag_cell() (Table method) tag_cget() (Table method) tag_col() (Table method) tag_configure() (Table method) tag_delete() (Table method) tag_exists() (Table method) tag_includes() (Table method) tag_lower() (Table method) tag_names() (Table method) tag_raise() (Table method) tag_row() (Table method) tagInit (ReadOnlyText attribute) take_time() (in module molass_legacy.KekLib.OurProfiler) td_ready_cb() (V2Menu method) tell() (ExcelTeller method) (InputTeller method) tell_xray_frame_redraw() (BackgroundMakerDialog method) TellerInfo (class in molass_legacy.ExcelProcess.ExcelTeller) temporary_preferences_begin() (in module molass_legacy.Synthesizer.Preferences) temporary_preferences_end() (in module molass_legacy.Synthesizer.Preferences) temporary_settings_begin() (in module molass_legacy.Synthesizer.SynthesizerSettings) temporary_settings_end() (in module molass_legacy.Synthesizer.SynthesizerSettings) temporary_trial() (in module molass_legacy.Simulative.SimulationCushion) temporary_trial_impl() (in module molass_legacy.Simulative.TemporaryTrial) term1() (XrayScattering method), [1] term2() (XrayScattering method), [1] terminate() (BackRunner method) (DenssManager method) (FullOptDialog method) (in module molass_legacy.DataStructure.InputDataUtils) (Manager method) (ProgressInfoDialog method) (SerialController method) (Thread method) terminate_manager() (in module molass_legacy.DENSS.DenssManagerDialog) (in module molass_legacy.MultiProc.ManagerDialog) terminate_manager_impl() (in module molass_legacy.DENSS.DenssManager) (in module molass_legacy.MultiProc.Manager) terminate_thread() (in module molass_legacy.KekLib.ThreadUtils) test() (FolderEntryDialog method) (FunctionDebugger method) test_a_folder() (MapperCanvasVariation1 method) (MapperCanvasVariation2 method) (Tester method) test_all() (Tester method) (TesterDialog method) test_all_data() (in module molass_legacy.Test.TestAllData) test_all_entry() (Tester method) test_cmd() (PilatusImageInfoTable method) test_compute_base_plane() (in module molass_legacy.Baseline.LambertBeerTester) test_data_walk() (in module molass_legacy.Batch.DataWalk) test_estimate_uvbaseline_impl() (in module molass_legacy.Optimizer.UvBaselineEstimator) test_folders() (NormalInput method) test_func() (MapperCanvasVariation1 method) (MapperCanvasVariation2 method) (NormalInput method) test_get_next_subfolder() (in module molass_legacy.SerialAnalyzer.DataUtils) test_it() (AdvancedFrame method) (in module molass_legacy.Optimizer.temp) test_lognormalpore() (AdvancedFrame method) test_optimizer() (in module molass_legacy.Optimizer.BaselineOptimizer) (in module molass_legacy.Optimizer.FixedBaselineOptimizer) test_select_row() (PilatusImageInfoTable method) test_serial_folder_walk() (in module molass_legacy.SerialAnalyzer.DataUtils) test_tripore() (AdvancedFrame method) test_update_guinier_region() (JobStateCanvas method) test_update_guinier_region_impl() (in module molass_legacy.GuinierTools.GuinierDeviationTester) TestClient (class in molass_legacy.KekLib.TkTester) TestDialog (class in molass_legacy.QuickAnalysis.ModeledPeaksTester) Tester (class in molass_legacy.Test.Tester) tester_cb() (SimpleGuinierTester method) TesterDialog (class in molass_legacy.Test.TesterDialog) TesterSimple (class in molass_legacy.Test.TesterSimple) text_template (DataCursor attribute) TextGroup (class in molass_legacy.KekLib.OurManim) TextGroup3D (class in molass_legacy.KekLib.OurManim3D) TextShowDialog (class in molass_legacy.KekLib.TextShowDialog) theory_simulation_2D() (in module molass_legacy.Decomposer.ErrorAnalysis) Thread (class in molass_legacy.KekLib.KillableThread) three_site_cf() (in module molass_legacy.SecTheory.Cavazzini1999) ThreeDimErrorViewer (class in molass_legacy.Tools.ThreeDimViewer) ThreeDimViewer (class in molass_legacy.Tools.ThreeDimViewer) ThreeStateCurves (class in molass_legacy.Microfluidics.ThreeStateDimerSolver) (class in molass_legacy.Microfluidics.ThreeStateMonomerSolver) ThreeStateDimerSolver (class in molass_legacy.Microfluidics.ThreeStateDimerSolver) ThreeStateMonomerSolver (class in molass_legacy.Microfluidics.ThreeStateMonomerSolver)

tight_layout() (in module molass_legacy.KekLib.DebugPlot) time_params_tracer() (ManualAdjuster method) time_re_sub() (in module molass_legacy.KekLib.LogDiff) title() (str method) tk_set_icon_portable() (in module molass_legacy.KekLib.TkSupplements) TkAppInit (class in molass_legacy.KekLib.TkAppInit) TkDebugDnd (class in molass_legacy.KekLib.TkDebugDnd) TkMiniTable (class in molass_legacy.KekLib.TkMiniTable) to_be_conitued_reports_dir_exists() (TesterDialog method) TO_BE_REMOVED (in module molass_legacy.Mapping.ElutionMapper) to_emga_params() (in module molass_legacy.Models.Egh2Emg) to_italic_font() (in module molass_legacy.Reports.CharacterFormatter) to_italic_subscipt_font() (in module molass_legacy.Reports.CharacterFormatter) to_norm_params() (BasicOptimizer method) to_real_params() (BasicOptimizer method) to_subscript_font() (in module molass_legacy.Reports.CharacterFormatter) to_subscripts() (in module molass_legacy.KekLib.Unicode) to_superscript_font() (in module molass_legacy.Reports.CharacterFormatter) to_superscripts() (in module molass_legacy.KekLib.Unicode) toFloat() (in module molass_legacy.Reports.ReportUtils) toggle() (OutlineViewerDialog method) toggle_2d3d() (SubtractorFrame method) toggle_3d_view() (BackgroundMakerDialog method) (ElutionCurvePicker method) toggle_animation() (SpikeDialog method), [1], [2] toggle_baseline() (ComplementaryView method) toggle_baseplane() (AbsorbanceViewer method) toggle_lpm_area() (AbsorbanceViewer method) toggle_mode() (ElutionMapperCanvas method) toggle_params_constraints() (DecompEditorFrame method) (RangeEditorFrame method) toggle_scale() (OutlineViewer2dFrame method) (ScatteringCurvePlotter method) toggle_show() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) toggle_show_width() (ElutionCurvePicker2dFrame method) torus_demo() (in module molass_legacy.Saxs.PhaseRetrievalDemo) TorusVoxels (class in molass_legacy.Saxs.SaxsSamples) tp_() (in module molass_legacy.SecTheory.Sepsey2014) tracer() (LogicalExpression method) (SaferSpinbox method) train() (MF method) transform() (Affine method) transform_list() (Affine method) transform_rho() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) translate() (str method) trial_demo() (in module molass_legacy.Optimizer.FvSynthesizer) TriAxialEllipsoid (class in molass_legacy.Theory.JsPedersen1997) trimming_debug_plot() (in module molass_legacy.Trimming.TrimmingDebugUtils) trimming_result_plot() (in module molass_legacy.Trimming.TrimmingDebugUtils) trimming_result_plot_impl() (in module molass_legacy.Trimming.TrimmingDebugUtils) trimming_strategy_tracer() (OptStrategyDialog method) TrimmingDebugDnd (class in molass_legacy.Trimming.TrimmingDebugDnd) TrimmingInfo (class in molass_legacy.Trimming.TrimmingInfo) TrimmingResultDialog (class in molass_legacy.Trimming.TrimmingResult) try_adding_minor_peak() (AutoRestrictor method) try_better_peak() (SimpleGuinier method) try_decompose() (ElutionDecomposer method) try_extending_right() (QrgLimitsAdjuster method) try_fit() (EmgPeak method) try_ift_optimization() (in module molass_legacy.Selective.IftOptimizer) try_image_save() (DecompEditorDialog method) (ElutionMapperCanvas method) (ExtrapolSolverDialog method) (RangeEditorDialog method) try_improve_mapping() (CurveSimilarity method) try_insert_user_peak() (PeakEditor method) try_kpd_minimization() (in module molass_legacy.Selective.KpdMinimizer) try_loop() (QrgLimitsAdjuster method) try_model_composing_tracer() (OptStrategyDialog method) try_rdr_minimization() (in module molass_legacy.Selective.RdrMinimizer) try_shifting_left() (QrgLimitsAdjuster method) try_to_find_uv_in_any_txt() (in module molass_legacy.SerialAnalyzer.SerialDataUtils) try_update_information() (FullOptDialog method) TtkScale (class in molass_legacy.KekLib.OurTtk) two_param_func() (TwoParamAnalysis method) two_site_cf() (in module molass_legacy.SecTheory.Cavazzini1999) two_site_phi() (in module molass_legacy.SecTheory.SecCF) TwoParamAnalysis (class in molass_legacy.Optimizer.TwoParamAnalysis) twopore_gec() (in module molass_legacy.SecTheory.Dondi2002) TwoSiteAlphaModel (class in molass_legacy.SecTheory.CavazziniProof) TwoSiteModel (class in molass_legacy.SecTheory.CavazziniProof) TwoSiteSpikeModel (class in molass_legacy.SecTheory.CavazziniProof) TwoStateCurves (class in molass_legacy.Microfluidics.TwoStateSolver) TwoStateSolver (class in molass_legacy.Microfluidics.TwoStateSolver) TypeInfoPanel (class in molass_legacy.GuinierAnalyzer.SimpleGuinierGuiUtils)

U

u0 (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property) u2B() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) ultranest_estimator() (in module molass_legacy.Solvers.NcallsEstimator) undo() (EditCanvas method) UnfoldingModel (class in molass_legacy.Microfluidics.UnfoldingModel) UnfoldingTutorial (class in molass_legacy.Microfluidics.UnfoldingTutorial) unified_fit() (DualEghMixture method) (QuadMM method) UnifiedDecompResult (class in molass_legacy.Decomposer.UnifiedDecompResult) uniform() (in module molass_legacy.Prob.EghBySampling) (in module molass_legacy.Prob.itsample) uniform_adsorption_energy() (in module molass_legacy.SecTheory.Cavazzini1999) uniform_mean_sojourn_time() (in module molass_legacy.SecTheory.Cavazzini1999) unit_test() (in module molass_legacy.Decomposer.UnifiedDecompResultTest) UnknownControlPanel (class in molass_legacy.Extrapolation.ExtrapolationControlPanel) unlink() (NpSharedMemory method) (SharedMemory method) unselect() (DraggableLine method) (DraggablePoints method) unserialize() (in module molass_legacy.Optimizer.SettingsSerializer) unserialize_for_optimizer() (in module molass_legacy.Optimizer.SettingsSerializer) unset() (ArrayVar method) update() (DecompEditorInfo method) (ElutionMapperAnimator method) (in module molass_legacy.KekLib.DebugPlot) (RangeEditorInfo method) (Sasrec method), [1] (ValidComponents method) update1() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) update1_impl() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) update2() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) update_abnormality_fix_state() (in module molass_legacy.SerialAnalyzer.AbnormalityCheck) update_all_selections() (UnifiedDecompResult method) update_almerge_line() (RangeInspectorDialog method) update_at_minima() (BasicOptimizer method) update_atsas_exe_paths() (SettingsDialog method) update_attributes() (FullOptInput method) update_bind_geometry() (ListingFrame method) update_bounds() (BasicOptimizer method) (G0525 method) (G0665 method) (G0705 method) update_bounds_hook() (BasicOptimizer method) (EdmParams method) (EghParamsBase method) update_button_colors() (ElutionMapperCanvas method) update_button_states() (DenssGuiDialog method) (PeakEditor method) update_button_status() (AdvancedFrame method) update_conc_factors() (ConcFactorsEntry method) update_current() (PilatusImageInfoTable method) update_current_frame_with_result() (DecompEditorDialog method) update_current_manip_info() (RangeInspectorDialog method) update_cursor() (DraggableCurves method) (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) update_diff_info() (RangeInspectorDialog method) update_displ_list() (DraggableCurves method) update_drawing() (RangeInspectorDialog method) update_eebars() (RangeSpecFrame method) (SpecPanel method) update_elution_curve() (OutlineFigure method) update_error_label() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) update_exprapolated() (PairedDataSets method) update_figs() (DecompEditorFrame method) (RangeEditorFrame method) (SuperEditorFrame method) update_geometry() (DenssManagerDialog method) (LinkedToplevel method) (ManagerDialog method) update_global_btn_state() (DecompEditorDialog method) update_guide_info() (ElutionMapperCanvas method) update_guide_message() (DenssGuiDialog method) (ElutionMapperCanvas method) update_guide_text() (ExtrapolationAnimationDialog method) update_guinier_region() (BasicOptimizer method) update_helper_info() (ElutionMapperCanvas method) update_information() (FullOptDialog method) update_init_state() (JobStateCanvas method) update_known_peak_info_list() (PeakSetSelector method) update_mapping() (in module molass_legacy.SSDC.MappingDecomposer) update_mapping_info() (SerialData method) update_mapping_precision_measure() (ElutionMapperAdjuster method) update_minima_props() (BasicOptimizer method) update_mode_dependent_state() (AdvancedFrame method) update_modelframe() (PreviewButtonFrame method) update_modules() (UpdateDailog method) update_molass_version_file() (in module molass_legacy.KekLib.VersionUtils) update_one_selection() (UnifiedDecompResult method) update_optimizer() (OptLrfInfo method) update_optimizer_impl() (in module molass_legacy.Optimizer.RgSecUpdater) update_optimizer_range() (Absorbance method) update_param() (ModelEvaluator method) update_params() (EghMixture method) (ElutionMapperCanvas method) (EmgMixture method) (VariationalMixture method)

update_params_for_data_correction() (ElutionMapperCanvas method) update_path_length() (ConcFactorsEntry method) (in module molass_legacy.DataStructure.InputDataUtils) update_picking_params() (MeasuredData method) update_plotter() (ElutionMapperAnimation method) update_pos() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) update_position() (DraggableArrow method) update_primary_peak() (BasicOptimizer method) update_progress() (PreparationProgress method) (ProgressDialog method) update_progress_text() (DenssGuiDialog method) (PdbFetcherDialog method) (PropOptimizerProgress method) update_proportional_uv_curve() (ElutionMapperAdjuster method) update_quality() (AdapterQualiy method) (Quality method) update_range() (DecompEditorFrame method) (MockEditor method) (PairedRange method) (RangeEditorFrame method) (RangeSpecFrame method) (SpecPanel method) update_range_info() (ElutionMapperCanvas method) update_ranges() (RangeSpecFrame method) (SpecPanel method) update_region() (GuinierDeviation method) update_result_with_bico_solver() (Guinier method) update_rg_params() (BasicOptimizer method) update_rg_ratio_range() (in module molass_legacy.SerialAnalyzer.StageGuinier) update_scale() (ScatteringCurvePlotter method) update_sd() (JudgeHolder method) update_sd_copy() (PreDecomposer method) update_sec_settings() (in module molass_legacy.Global.V2Init) update_sec_settings_by_id() (in module molass_legacy.Experiment.ColumnTypes) update_sec_settings_impl() (in module molass_legacy.Experiment.DataUtils) update_selection_state() (DecompEditorDialog method) (ModelSelectFrame method) update_selector() (LpmInspector method) update_separate_eoii_flags() (OptStrategyDialog method) update_separate_eoii_simple() (OptStrategyDialog method) update_settings() (PreviewButtonFrame method) update_show_diff_btn_state() (ElutionMapperPlotter method) update_skipbutton_name() (FullOptDialog method) update_state() (OptJobInfo method) update_states() (GuiDenssToolsMenu method) (GuiMctToolsMenu method) (GuiSecToolsMenu method) (GuiTutorialsMenu method) (in module molass_legacy.SecTheory.PlateTheory) update_status_bar() (PeakEditor method) update_table() (DenssManagerDialog method) (ManagerDialog method) update_texts() (ConformanceDemo method) update_to_solve_range() (ExtrapolSolverDialog method) update_try_model_composing_cb() (FullOptDialog method) update_velo() (in module molass_legacy.Factors.PyChemLib) (in module molass_legacy.Factors.PyChemLib2D) (in module molass_legacy.Factors.PyChemLib3D) update_view_width_button() (JobStateCanvas method) update_widgets() (PreviewButtonFrame method) update_with_result() (DecompEditorFrame method) update_x_curve() (JudgeHolder method) update_xr_peaks() (EditCanvas method) update_xray_elution_info() (SerialData method) update_yscale() (RangeInspectorDialog method) UpdateDailog (class in molass_legacy.KekLib.UpdateDailog) upgrade_ranges() (in module molass_legacy.DataStructure.AnalysisRangeInfo) upper() (str method) url (Query attribute) use_column_constraints_tracer() (DecompEditorDialog method) (ModelSelectFrame method) use_default_style() (in module molass_legacy.KekLib.OurManim) use_xray_conc_tracer() (SpecialistOptionsDialog method) user_cancel() (DecompEditorDialog method) (EditCanvas method) (PeakEditor method) (PreparationProgress method) (RangeEditorDialog method) user_tracer_caller() (SaferSpinbox method) UserCancel, [1] UserHandle (class in molass_legacy.KekLib.KnownPaths) using_normal_conc() (in module molass_legacy.Tools.OutlineViewer) Uv2dLpm (class in molass_legacy.SerialAnalyzer.Uv2dLpm) uv_baseline() (BasicOptimizer method) uv_baseline_adjuster() (ElutionMapper method) uv_baseline_opt_tracer() (ElutionMapperAdjuster method) uv_to_xr() (MappedInfo method) UvAbsorbance (class in molass_legacy.SerialAnalyzer.SphericalModel) (class in molass_legacy.SerialAnalyzer.SphericalModelNew) UvAdjuster (class in molass_legacy.Rgg.UvAdjuster) UvBaseCurve (class in molass_legacy.Baseline.UvBaseCurve) UvBaselineEstimator (class in molass_legacy.Optimizer.UvBaselineEstimator) UvBaseSolver (class in molass_legacy.Trimming.UvBaseSolver) UvBaseSpline (class in molass_legacy.Baseline.UvBaseSpline) UvBaseSurface (class in molass_legacy.SerialAnalyzer.UvBaseSurface) UvCorrector (class in molass_legacy.Trimming.UvCorrector) UvCorrectorEgh (class in molass_legacy.Trimming.UvCorrectorEgh) UvCorrectorSpline (class in molass_legacy.Trimming.UvCorrectorSpline) UvData (class in molass_legacy.DataStructure.UvData) UvFolderEntry (class in molass_legacy.GuiParts.UvFolderEntry) UvPreRecog (class in molass_legacy.UV.UvPreRecog) UvSpecCurve (class in molass_legacy.DataStructure.UvSpecCurve)

V

V1PreviewAdapter (class in molass_legacy.V2PropOptimizer.V1PreviewAdapter) v2_exec_wrapper() (V2Menu method) v2_result_folder_tracer() (TesterDialog method) v2B() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) V2Menu (class in molass_legacy.Menus.V2Menu) valid_range_demo() (in module molass_legacy.HdcTheory.SpikeDemo) validate() (AbsorbanceSaveDialog method) (CrysolResultsEntry method) (Dialog method) (EditCanvas method) (ElutionMapperCanvas method) (ExtrapolSolverDialog method) (OptStrategyDialog method) (PreviewResultSaverDialog method) (QmmOptionsDialog method) (QmmResultSaverDialog method) (RangeInspectorDialog method) (RestoreSettingDialog method) (SaferSpinbox method) (ScatteringSaveDialog method) (Table method) (TesterDialog method) (VariedPropAnalysis method)

ValidComponents (class in molass_legacy.Optimizer.ValidComponents) VariationalMixture (class in molass_legacy.Rgg.VariationalMixture) VariationBase (class in molass_legacy.Test.TesterMiscellaneous) VariedPropAnalysis (class in molass_legacy.Selective.VariedPropAnalysis) (class in molass_legacy.V2PropOptimizer.VariedPropAnalysis) Vcerrf() (Sasrec method), [1] verify_approx_mapping() (PreliminaryRecognition method) verify_basic_assumptions() (in module molass_legacy.SecTheory.EghCompat) verify_eno_interval() (FlowSimulator method) version (Table property) view_init() (Scattering3dPlotFrame method) (Scattering3dSimpleFrame method) (ScatteringPlot method) view_reset() (Canvas3D method) visit() (PrintNodeVisitor method) VisSurface (class in molass_legacy.KekLib.OurGeomdl) VoxelFFT (class in molass_legacy.Tutorials.VoxelFFT) Vperrf() (Sasrec method), [1]

W

w (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property) wait_for_ready() (InputData method) wait_for_v2_completion() (Tester method) wait_for_xray_loading() (SerialDataLoader method) wait_install_complete() (UpdateDailog method) wait_proc() (CleanerThread method) wait_until_hhmm() (in module molass_legacy.KekLib.TimeUtils) wait_until_ready() (SerialData method) (SerialDataLoader method) warning() (Logger method) (LogPicker method) warnlog_exception() (in module molass_legacy.KekLib.ExceptionTracebacker) warped_weight_vector() (in module molass_legacy.KekLib.NumpyUtils) wass() (in module molass_legacy.DMM.discrete_rv) watch() (AutoRangeInspector method) watch_rg_curve_thread() (PeakEditor method) width() (Table method) Window (class in molass_legacy.KekLib.MessageBoxUtils) window_cget() (Table method) window_configure() (Table method) window_delete() (Table method) window_exists() (in module molass_legacy.KekLib.MessageBoxUtils) window_move() (Table method)

window_names() (Table method) with_props_tracer() (AdvancedFrame method) WLS (class in molass_legacy.AutorgKek.WLS_Basics) (class in molass_legacy.KekLib.OurStatsModels) WLS_HeadTrend (class in molass_legacy.AutorgKek.WLS_Rg) WLS_Rg (class in molass_legacy.AutorgKek.WLS_Rg) WlsDecomposer (class in molass_legacy.Decomposer.WlsDecomposer) Workbook_ (class in molass_legacy.KekLib.ExcelCOM) Worksheet (class in molass_legacy.KekLib.ExcelCOM) write() (Console method) (PDB method), [1] (StdoutLogger method) (StdoutRedirector method), [1], [2], [3] write_csv() (SimpleGuinierAnalyzer method) write_from_log_queue() (in module molass_legacy.Test.TesterLogger) write_gunier_stamp() (in module molass_legacy.SerialAnalyzer.StageGuinier) write_info() (in module molass_legacy.Mapping.SurveyUtils) write_init_callback_txt() (BasicOptimizer method) write_mrc() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) write_residual_amount_to_testerlog() (DecompEditorFrame method) write_state() (SerialExecuter method) write_the_successful_script() (in module molass_legacy.KekLib.NoseUtils) write_to_dev_log() (in module molass_legacy.Test.TesterLogger) write_to_log() (in module molass_legacy.Test.TesterLogger) write_to_tester_log() (in module molass_legacy.Test.TesterLogger) write_xplor() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core)

X

x (DataCursor attribute) (POINT attribute) x_formatter() (GuinierProofPlot method) (MyFormatter method) (Plotter method) x_from_height_ratio() (EGH method) (EGHA method) (EMG method) (EMGA method) (ModelEvaluator method) x_from_height_ratio_impl() (in module molass_legacy.Models.ElutionModelUtils) xoffset (DataCursor attribute) xr_baseline() (BasicOptimizer method)

xr_to_uv() (MappedInfo method) xray_baseline_adjuster() (ElutionMapper method) xray_baseline_opt_tracer() (ElutionMapperAdjuster method) xray_baseline_type_tracer() (LpmInspector method) XrayData (class in molass_legacy.DataStructure.XrayData) XrayScattering (class in molass_legacy.SerialAnalyzer.SphericalModel) (class in molass_legacy.SerialAnalyzer.SphericalModelNew) XrLrfResult (class in molass_legacy.Optimizer.LrfExporter) XrSpecCurve (class in molass_legacy.DataStructure.XrSpecCurve) xruv_scale_ratio_penalty() (in module molass_legacy.Optimizer.XrUvScaleRatio) xview() (Table method) xview_moveto() (Table method) xview_scroll() (Table method)

Y

y (DataCursor attribute) (POINT attribute) y0 (concentration_simple property) (concentration_smooth property) (profile_real_space property) (profile_simple property) (profile_smooth property)

yoffset (DataCursor attribute) Yt() (in module molass_legacy.Theory.PbMoore1980) (Sasrec method), [1] yview() (Table method) yview_moveto() (Table method) yview_scroll() (Table method)

Z

ZeroExOverlayArgs (class in molass_legacy.Reports.ZeroExExcelFormatter) ZeroExReportArgs (class in molass_legacy.Reports.ZeroExExcelFormatter) ZeroExtrapolationOverlayBook (class in molass_legacy.Reports.ZeroExtrapolationOverlayBook) ZeroExtrapolationResultBook (class in molass_legacy.Reports.ZeroExtrapolationResultBook) ZeroExtrapolator (class in molass_legacy.SerialAnalyzer.ZeroExtrapolator) zfill() (str method) zip (class in molass_legacy.DENSS.denss)

zoom() (Worksheet method) zoom_factory() (ZoomPan method) zoom_rho() (in module molass_legacy.DENSS.denss) (in module molass_legacy.DENSS.denss.core) ZoomPan (class in molass_legacy.Synthesizer.ZoomPan) zx_boundary_method_tracer() (SpecialistOptionsDialog method) ZxDialogProxy (class in molass_legacy.V2PropOptimizer.V1PreviewAdapter) ZxSolver (class in molass_legacy.Extrapolation.ExtrapolationProof)