SerialAnalyzer

Submodules

• SerialAnalyzer.AbnormalityCheck
  • bubble_check()
  • bubble_check_impl()
  • exclude_abnormality()
  • update_abnormality_fix_state()
• SerialAnalyzer.AffineDemo
  • AffineDemoDialog
    • AffineDemoDialog.body()
    • AffineDemoDialog.buttonbox()
    • AffineDemoDialog.draw()
    • AffineDemoDialog.show()
  • demo_plot()
• SerialAnalyzer.AnalysisRangeManager
  • get_analysis_ranges_for_exec()
  • get_analysis_ranges_from_sd()
• SerialAnalyzer.AnalyzerUtil
  • compute_conc_factor_util()
  • exists_guinier_analysis_result()
  • get_analysis_ranges()
  • get_init_ranges()
  • make_guinier_result_stamp()
  • set_analysis_ranges()
• SerialAnalyzer.AnimObjects
  • AnimMapper
    • AnimMapper.copy()
• SerialAnalyzer.AveragingDiscussion
  • AveragingDiscussion
    • AveragingDiscussion.on_button_press()
    • AveragingDiscussion.on_draw()
  • extrapolate()
• SerialAnalyzer.BasePercentileOffset
  • base_percentile_offset()
  • compute_noise_and_size_sigma_dependency()
  • load_bpo_table()
• SerialAnalyzer.BasePlane
  • LambertBeerPlane
    • LambertBeerPlane.get_params()
  • LowPercentilePlane
    • LowPercentilePlane.get_params()
  • debug_plot()
• SerialAnalyzer.BaseSurfaceSpline
  • BaseSurfaceSpline
    • BaseSurfaceSpline.e_curve
  • compute_concentration()
• SerialAnalyzer.BpoDependencyDemo
  • BpoDependencyDemo
    • BpoDependencyDemo.body()
    • BpoDependencyDemo.show()
  • MyFormatter
    • MyFormatter.x_formatter()
  • demo_func()
• SerialAnalyzer.ConnectedIntervals
  • ConnectedIntervals
• SerialAnalyzer.CurveFeatures
  • CurveFeatures
    • CurveFeatures.find_foot()
    • CurveFeatures.get_foot_points()
    • CurveFeatures.get_points()
    • CurveFeatures.get_valley_bottom()
  • rotate()
• SerialAnalyzer.CurveSaverDialog
  • CurveSaverDialog
    • CurveSaverDialog.body()
    • CurveSaverDialog.buttonbox()
    • CurveSaverDialog.save()
    • CurveSaverDialog.show()
• SerialAnalyzer.CustomNavigationToolbar
  • CustomNavigationToolbar
    • CustomNavigationToolbar.mouse_move()
• SerialAnalyzer.DataUtils
  • compact_path_name()
  • cut_upper_folders()
  • do_folder()
  • get_in_folder()
  • get_local_path()
  • get_next_subfolder()
  • get_pytools_folder()
  • get_root_folder()
  • is_microfluidic()
  • mct_folder_walk()
  • serial_folder_walk()
  • test_get_next_subfolder()
  • test_serial_folder_walk()
• SerialAnalyzer.DevSettings
  • dev_init()
  • get_dev_setting()
  • set_dev_setting()
• SerialAnalyzer.DeveloperOptions
  • DeveloperOptionsDialog
    • DeveloperOptionsDialog.apply()
    • DeveloperOptionsDialog.body()
    • DeveloperOptionsDialog.buttonbox()
    • DeveloperOptionsDialog.clear_settings()
    • DeveloperOptionsDialog.show()
  • GpuDialog
    • GpuDialog.body()
    • GpuDialog.buttonbox()
  • PlatformDialog
    • PlatformDialog.body()
    • PlatformDialog.buttonbox()
  • ProcessorDialog
    • ProcessorDialog.body()
    • ProcessorDialog.buttonbox()
• SerialAnalyzer.DraggableLine
  • DraggableLine
    • DraggableLine.button_press_callback()
    • DraggableLine.button_release_callback()
    • DraggableLine.get_ind()
    • DraggableLine.motion_notify_callback()
    • DraggableLine.unselect()
• SerialAnalyzer.DraggablePoints
  • DraggablePoints
    • DraggablePoints.on_motion()
    • DraggablePoints.on_pick()
    • DraggablePoints.on_press()
    • DraggablePoints.on_release()
    • DraggablePoints.select()
    • DraggablePoints.unselect()
• SerialAnalyzer.DriftAnalyzer
  • DriftAnalyzer
    • DriftAnalyzer.solve()
  • create_mapper_for_drift_analysis()
  • get_baselines()
• SerialAnalyzer.DriftLinearModel
  • DriftLinearModel
    • DriftLinearModel.compute_initial_values()
    • DriftLinearModel.draw()
    • DriftLinearModel.fit()
    • DriftLinearModel.guinier_porod_fit()
    • DriftLinearModel.simulate()
  • DriftLinearModelDialog
    • DriftLinearModelDialog.body()
    • DriftLinearModelDialog.show()
• SerialAnalyzer.DriftSimulation
  • BicomponentSimulator
    • BicomponentSimulator.body()
    • BicomponentSimulator.draw()
    • BicomponentSimulator.show()
  • DriftSimulation
    • DriftSimulation.create_sim_data()
  • apply_simulated_baseline_correction()
• SerialAnalyzer.ElutionBaseCurve
  • ElutionBaseCurve
    • ElutionBaseCurve.compute_base_percentile_offset()
    • ElutionBaseCurve.compute_noisiness()
    • ElutionBaseCurve.compute_peak_width()
    • ElutionBaseCurve.compute_peak_width_impl()
    • ElutionBaseCurve.compute_size_sigma()
    • ElutionBaseCurve.recognize_peaks()
    • ElutionBaseCurve.split()
  • get_spline_smoothing()
  • get_spline_smoothing_better()
• SerialAnalyzer.ElutionCurve
  • ElutionCurve
    • ElutionCurve.add_peaks()
    • ElutionCurve.compute_moments()
    • ElutionCurve.compute_sedimentation_rate()
    • ElutionCurve.compute_valley_bottom_score()
    • ElutionCurve.determine_knots()
    • ElutionCurve.get_default_editor_ranges()
    • ElutionCurve.get_default_paired_ranges()
    • ElutionCurve.get_emg_peaks()
    • ElutionCurve.get_end_points()
    • ElutionCurve.get_end_slices()
    • ElutionCurve.get_end_y()
    • ElutionCurve.get_height_ratio()
    • ElutionCurve.get_low_peak_stand_out_ratio()
    • ElutionCurve.get_lower_from_d1y()
    • ElutionCurve.get_lower_from_y()
    • ElutionCurve.get_major_peak_info()
    • ElutionCurve.get_major_valley_bottoms()
    • ElutionCurve.get_model_param_list()
    • ElutionCurve.get_peak_boundaries()
    • ElutionCurve.get_peak_position()
    • ElutionCurve.get_peak_region()
    • ElutionCurve.get_peak_region_sigma()
    • ElutionCurve.get_peak_region_width()
    • ElutionCurve.get_primary_peak_info()
    • ElutionCurve.get_primary_peak_num_points()
    • ElutionCurve.get_primarypeak_i()
    • ElutionCurve.get_primarypeak_x()
    • ElutionCurve.get_range_boudaries()
    • ElutionCurve.get_ranges_by_ratio()
    • ElutionCurve.get_significant_peaks()
    • ElutionCurve.get_upper_from_d1y()
    • ElutionCurve.get_upper_from_y()
    • ElutionCurve.get_xy()
    • ElutionCurve.has_few_points()
    • ElutionCurve.is_ignorable_peak()
    • ElutionCurve.is_roughly_centered()
    • ElutionCurve.locally_tall_enough()
    • ElutionCurve.locally_tall_enough_evenif_rotated()
    • ElutionCurve.low_peak_stands_out_clearly()
    • ElutionCurve.make_just_one_peak_info()
    • ElutionCurve.make_rich_peak_info()
    • ElutionCurve.modify_ranges_to_avoid_too_narrow_valley()
    • ElutionCurve.peak_no_from_range()
    • ElutionCurve.remove_peaks()
    • ElutionCurve.set_major_infos()
    • ElutionCurve.set_peak_dependent_info()
    • ElutionCurve.set_primary_info()
• SerialAnalyzer.ElutionStainModel
  • ElutionStainModel
    • ElutionStainModel.learn()
• SerialAnalyzer.ElutionalSmootherUtils
  • LightIntensityData
• SerialAnalyzer.GuinierProofPlot
  • GuinierProofPlot
    • GuinierProofPlot.close()
    • GuinierProofPlot.show()
    • GuinierProofPlot.x_formatter()
• SerialAnalyzer.GuinierStartSelector
  • GuinierStartSelector
    • GuinierStartSelector.body()
    • GuinierStartSelector.buttonbox()
    • GuinierStartSelector.cancel()
    • GuinierStartSelector.compute_guinier_stop()
    • GuinierStartSelector.destroy_parent()
    • GuinierStartSelector.draw_elution_curve_area()
    • GuinierStartSelector.draw_func()
    • GuinierStartSelector.draw_guinier_interval()
    • GuinierStartSelector.guinier_fig_peak_no_tracer()
    • GuinierStartSelector.guinier_start_point_tracer()
    • GuinierStartSelector.ok()
    • GuinierStartSelector.set_plot_data()
    • GuinierStartSelector.show()
• SerialAnalyzer.InputOutputDisplay
  • InputOutputDisplay
• SerialAnalyzer.InputSmootherAveraging
  • ConcentrationSmootherAveraging
  • IntensitySmootherAveraging
• SerialAnalyzer.LPM_Animation
  • LPM_AnimationDialog
  • ScatteringBaseline
    • ScatteringBaseline.get_low_percentile_params()
    • ScatteringBaseline.is_alternating()
    • ScatteringBaseline.show_animation()
    • ScatteringBaseline.solve()
  • animation_example()
  • animation_example2()
• SerialAnalyzer.LinearityScore
  • LinearityScore
    • LinearityScore.get_params()
  • linearity_score100()
  • stderror_score100()
• SerialAnalyzer.LowPercentileSpline
  • LowPercentileSpline
  • bspline_surface()
• SerialAnalyzer.LowRankSolver
  • LowRankSolver
    • LowRankSolver.generate_baseplane()
    • LowRankSolver.solve_base_plane()
• SerialAnalyzer.MakeItMoreClever
  • increase_menu_availability()
• SerialAnalyzer.MappingAutoHelper
  • get_add_info()
  • make_helper_info()
• SerialAnalyzer.MappingZoomCanvas
  • MappingZoomCanvas
    • MappingZoomCanvas.canvas_focus_set()
    • MappingZoomCanvas.create_canvas()
    • MappingZoomCanvas.draw()
    • MappingZoomCanvas.quit()
• SerialAnalyzer.MplPlotCanvas
  • MplPlotCanvas
    • MplPlotCanvas.body()
    • MplPlotCanvas.button_press()
    • MplPlotCanvas.key_press()
    • MplPlotCanvas.quit()
• SerialAnalyzer.NoExcelWarningDialog
  • NoExcelWarningDialog
    • NoExcelWarningDialog.body()
    • NoExcelWarningDialog.buttonbox()
    • NoExcelWarningDialog.do_not_repeat()
    • NoExcelWarningDialog.show()
• SerialAnalyzer.NormalVectorDiff
  • NormalVectorDiff
    • NormalVectorDiff.diff()
• SerialAnalyzer.OptimalSmoothing
  • OptimalSmoothing
    • OptimalSmoothing.baseline_correct_simply()
    • OptimalSmoothing.compute_optimal_curves()
    • OptimalSmoothing.get_good_top_candidates()
    • OptimalSmoothing.get_halfmax_points_of_a_peak()
    • OptimalSmoothing.get_logger()
    • OptimalSmoothing.get_original_top_x()
    • OptimalSmoothing.plot_variations()
  • SMALL_DIFF
• SerialAnalyzer.PairedRangeLogger
  • log_paired_ranges()
• SerialAnalyzer.PlateauRegions
  • PlateauRegions
    • PlateauRegions.adjust()
    • PlateauRegions.is_consistent()
• SerialAnalyzer.PlotAnnotation
  • add_flow_change_annotation()
• SerialAnalyzer.PreSyncViewer
  • PreSyncViewer
    • PreSyncViewer.body()
    • PreSyncViewer.create_popup_menu()
    • PreSyncViewer.on_button_press()
    • PreSyncViewer.on_right_button_press()
    • PreSyncViewer.save_the_figure()
    • PreSyncViewer.show()
    • PreSyncViewer.show_error_data()
• SerialAnalyzer.PrerecogProxy
  • FlowChangeProxy
    • FlowChangeProxy.get_flow_changes()
  • PrerecogProxy
    • PrerecogProxy.get_rg()
    • PrerecogProxy.get_xray_shift()
• SerialAnalyzer.ProgressChart
  • ProgressChart
    • ProgressChart.draw()
• SerialAnalyzer.ProgressInfoUtil
  • ProgressCallback
  • estimate_gunier()
  • estimate_init_max_dist()
  • extimate_zero_extrapolation()
• SerialAnalyzer.ProofPlot
  • Plotter
    • Plotter.draw_curvature_etc()
    • Plotter.draw_guineier()
    • Plotter.draw_scatter_and_lines()
    • Plotter.get_qrg_min_max()
    • Plotter.plot_guineier_inverval()
    • Plotter.plot_q_rg()
    • Plotter.show()
    • Plotter.show_prepare()
    • Plotter.x_formatter()
• SerialAnalyzer.QuantileRegression
  • QuantileRegression
• SerialAnalyzer.QuantileRegressionKeras
• SerialAnalyzer.QuantileRegressionSklearn
  • Model
    • Model.fit()
    • Model.predict()
• SerialAnalyzer.ResultGui
  • ResultGui
    • ResultGui.at_exit()
    • ResultGui.control_c()
    • ResultGui.create_popup_menu()
    • ResultGui.run_autorg()
    • ResultGui.show_comments()
    • ResultGui.show_proof_plot()
    • ResultGui.show_results()
• SerialAnalyzer.ResultTable
  • ResultTable
    • ResultTable.refresh()
• SerialAnalyzer.Scattering3dPlot
  • Scattering3dPlotDialog
    • Scattering3dPlotDialog.apply()
    • Scattering3dPlotDialog.body()
    • Scattering3dPlotDialog.buttonbox()
    • Scattering3dPlotDialog.show()
  • Scattering3dPlotFrame
    • Scattering3dPlotFrame.body()
    • Scattering3dPlotFrame.buttonbox()
    • Scattering3dPlotFrame.compute_projected_xy()
    • Scattering3dPlotFrame.create_popup_menu()
    • Scattering3dPlotFrame.cunstom_button_box_add()
    • Scattering3dPlotFrame.draw()
    • Scattering3dPlotFrame.guess_pointed_elution_no()
    • Scattering3dPlotFrame.guinier_analysis()
    • Scattering3dPlotFrame.on_button_press()
    • Scattering3dPlotFrame.on_draw()
    • Scattering3dPlotFrame.on_right_button_press()
    • Scattering3dPlotFrame.redraw()
    • Scattering3dPlotFrame.show_guinier_viewer()
    • Scattering3dPlotFrame.show_save_dialog()
    • Scattering3dPlotFrame.update_cursor()
    • Scattering3dPlotFrame.view_init()
  • ScatteringSaveDialog
    • ScatteringSaveDialog.adjust_geometry()
    • ScatteringSaveDialog.body()
    • ScatteringSaveDialog.on_entry_xb_folder()
    • ScatteringSaveDialog.postfix_eg_update()
    • ScatteringSaveDialog.save_xray_scattering_base()
    • ScatteringSaveDialog.show()
    • ScatteringSaveDialog.validate()
• SerialAnalyzer.Scattering3dSimple
  • Scattering3dSimpleDialog
    • Scattering3dSimpleDialog.apply()
    • Scattering3dSimpleDialog.body()
    • Scattering3dSimpleDialog.buttonbox()
    • Scattering3dSimpleDialog.show()
  • Scattering3dSimpleFrame
    • Scattering3dSimpleFrame.body()
    • Scattering3dSimpleFrame.buttonbox()
    • Scattering3dSimpleFrame.compute_baselines()
    • Scattering3dSimpleFrame.compute_projected_xy()
    • Scattering3dSimpleFrame.create_popup_menu()
    • Scattering3dSimpleFrame.cunstom_button_box_add()
    • Scattering3dSimpleFrame.draw()
    • Scattering3dSimpleFrame.draw_3d_scattering()
    • Scattering3dSimpleFrame.guess_pointed_elution_no()
    • Scattering3dSimpleFrame.guinier_analysis()
    • Scattering3dSimpleFrame.on_button_press()
    • Scattering3dSimpleFrame.on_draw()
    • Scattering3dSimpleFrame.on_right_button_press()
    • Scattering3dSimpleFrame.redraw()
    • Scattering3dSimpleFrame.update_cursor()
    • Scattering3dSimpleFrame.view_init()
  • is_to_plot()
• SerialAnalyzer.ScatteringBaseCorrector
  • ScatteringBaseCorrector
    • ScatteringBaseCorrector.compute_baseline_and_corrrect()
    • ScatteringBaseCorrector.compute_noisiness()
    • ScatteringBaseCorrector.correct_a_single_q_plane()
    • ScatteringBaseCorrector.correct_all_q_planes()
    • ScatteringBaseCorrector.correct_with_matrix_base()
    • ScatteringBaseCorrector.do_adjustment()
  • compute_baseline_using_LPM_impl()
• SerialAnalyzer.ScatteringBaseInvestigator
  • InvestigatorDialog
    • InvestigatorDialog.back_()
    • InvestigatorDialog.body()
    • InvestigatorDialog.buttonbox()
    • InvestigatorDialog.draw_a_plane()
    • InvestigatorDialog.inc_var_tracer()
    • InvestigatorDialog.index_var_tracer()
    • InvestigatorDialog.next_()
    • InvestigatorDialog.redraw_tracer()
    • InvestigatorDialog.show()
• SerialAnalyzer.ScatteringBaseUtil
  • apply_baseline_correction_impl()
• SerialAnalyzer.ScatteringBasecomposite
  • ScatteringBasecomposite
    • ScatteringBasecomposite.get_baseline()
    • ScatteringBasecomposite.solve()
  • get_spline_smoothing_for_base()
• SerialAnalyzer.ScatteringBasecurve
  • ScatteringBasecurve
    • ScatteringBasecurve.debug_plot()
    • ScatteringBasecurve.get_low_percentile_params()
    • ScatteringBasecurve.solve()
    • ScatteringBasecurve.solve_quadratic()
• SerialAnalyzer.ScatteringBasespline
  • ScatteringBasespline
    • ScatteringBasespline.get_baseline()
    • ScatteringBasespline.solve()
  • get_spline_smoothing_for_base()
• SerialAnalyzer.ScatteringBasesurface
  • ScatteringBasesurface
    • ScatteringBasesurface.compute_average_curve()
    • ScatteringBasesurface.compute_lines()
    • ScatteringBasesurface.compute_slope_param_fg()
    • ScatteringBasesurface.plot()
  • is_to_plot()
• SerialAnalyzer.ScatteringPlot
  • ScatteringPlot
    • ScatteringPlot.add_basesurface()
    • ScatteringPlot.change_to_corrected_3d()
    • ScatteringPlot.create_corrected_data()
    • ScatteringPlot.create_popup_menu()
    • ScatteringPlot.cunstom_button_box()
    • ScatteringPlot.cunstom_button_box_add()
    • ScatteringPlot.draw_3d_for_gui()
    • ScatteringPlot.draw_3d_scattering()
    • ScatteringPlot.get_file_index()
    • ScatteringPlot.guinier_analysis()
    • ScatteringPlot.popup()
    • ScatteringPlot.redraw()
    • ScatteringPlot.view_init()
• SerialAnalyzer.ScatteringViewUtils
  • compute_baselines()
  • draw_3d_scattering()
  • is_to_plot()
• SerialAnalyzer.SdDebugger
  • SdDebugger
    • SdDebugger.save_info()
• SerialAnalyzer.SerialAtsasTools
• SerialAnalyzer.SerialControlInfo
  • SerialControlInfo
• SerialAnalyzer.SerialController
  • ExecInfo
  • SerialController
    • SerialController.is_alive()
    • SerialController.kill()
    • SerialController.start()
    • SerialController.terminate()
  • SerialExecuter
    • SerialExecuter.cleanup()
    • SerialExecuter.clear_state()
    • SerialExecuter.compute_num_guinier_steps()
    • SerialExecuter.error_cleanup()
    • SerialExecuter.error_wrapup()
    • SerialExecuter.get_intensity_array()
    • SerialExecuter.make_temp_folder()
    • SerialExecuter.run()
    • SerialExecuter.save_settings()
    • SerialExecuter.save_smoothed_data()
    • SerialExecuter.set_analysis_range()
    • SerialExecuter.set_control_data()
    • SerialExecuter.stop_check()
    • SerialExecuter.write_state()
• SerialAnalyzer.SerialData
  • SerialData
    • SerialData.apply_baseline_correction()
    • SerialData.apply_data_reduction()
    • SerialData.compute_scattering_baseline_discomfort()
    • SerialData.exclude_intensities()
    • SerialData.exclude_intensity()
    • SerialData.get_around_slice()
    • SerialData.get_averaged_data()
    • SerialData.get_cd_slice()
    • SerialData.get_copy()
    • SerialData.get_data_shapes()
    • SerialData.get_elution_curves()
    • SerialData.get_exec_copy()
    • SerialData.get_exec_copy_inside_of_flowchanges()
    • SerialData.get_id_info()
    • SerialData.get_original_peak_top_x_pair()
    • SerialData.get_usable_q_limit()
    • SerialData.get_usable_slice()
    • SerialData.get_uv_curve()
    • SerialData.get_uv_data_separate_ly()
    • SerialData.get_uv_elution_vector()
    • SerialData.get_v2_copy()
    • SerialData.get_xr_curve()
    • SerialData.get_xr_data_separate_ly()
    • SerialData.get_xray_curve()
    • SerialData.get_xray_data()
    • SerialData.get_xray_elution_vector()
    • SerialData.get_xray_scale()
    • SerialData.is_serial()
    • SerialData.load_conc_array()
    • SerialData.load_intensity_array()
    • SerialData.log_id_values()
    • SerialData.read()
    • SerialData.save_xray_data()
    • SerialData.set_data()
    • SerialData.set_intensity_array()
    • SerialData.set_ivector_etcetera()
    • SerialData.set_mc_vector()
    • SerialData.set_offsets()
    • SerialData.set_offsets_from_md()
    • SerialData.set_prerecog_proxy()
    • SerialData.update_mapping_info()
    • SerialData.update_xray_elution_info()
    • SerialData.wait_until_ready()
• SerialAnalyzer.SerialDataLoader
  • SerialDataLoader
    • SerialDataLoader.get_active_uv_data()
    • SerialDataLoader.get_current_object()
    • SerialDataLoader.get_current_object_impl()
    • SerialDataLoader.get_data_object()
    • SerialDataLoader.get_init_object()
    • SerialDataLoader.get_restricted_uv_data()
    • SerialDataLoader.get_restricted_xray_data()
    • SerialDataLoader.has_enough_num_files()
    • SerialDataLoader.load_data()
    • SerialDataLoader.load_from_folders()
    • SerialDataLoader.load_uv_data()
    • SerialDataLoader.load_xray_data()
    • SerialDataLoader.load_xray_data_in_another_thread()
    • SerialDataLoader.load_xray_data_only()
    • SerialDataLoader.load_xray_data_only_impl()
    • SerialDataLoader.make_mtd_simulated_uv_data()
    • SerialDataLoader.make_xray_proportinal_uv_data()
    • SerialDataLoader.memorize_exclusion()
    • SerialDataLoader.reset_current_status()
    • SerialDataLoader.reset_input_status()
    • SerialDataLoader.reset_load_status()
    • SerialDataLoader.wait_for_xray_loading()
    • SerialDataLoader.wait_until_ready()
  • get_restrict_ranges()
• SerialAnalyzer.SerialDataUtils
  • convert_to_the_least_shape()
  • find_conc_files()
  • get_file_no()
  • get_mtd_filename()
  • get_uv_filename()
  • get_xray_files()
  • load_intensity_files()
  • load_uv_array()
  • load_uv_file()
  • load_xray_files()
  • np_loadtxt_intensity()
  • sa_uv_loadtxt()
  • sa_uv_savetxt()
  • save_xray_base_profiles()
  • serial_np_loadtxt()
  • try_to_find_uv_in_any_txt()
• SerialAnalyzer.SerialTestUtils
  • MockExecuter
  • create_our_logger()
  • debug_plot_runner()
  • get_global_info()
  • get_mapper_for_the_test()
  • get_serialdata_simply()
  • get_tttt_data_objects()
  • get_uv_elution_vector()
  • prepare_serialdata_env()
  • set_setting_for_baseline_correction()
  • standard_setup()
• SerialAnalyzer.SettingsDialog
  • RestoreSettingDialog
    • RestoreSettingDialog.apply()
    • RestoreSettingDialog.body()
    • RestoreSettingDialog.on_entry_in_folder()
    • RestoreSettingDialog.restore_setting()
    • RestoreSettingDialog.validate()
  • SettingsDialog
    • SettingsDialog.absorbance_update_tracer()
    • SettingsDialog.apply()
    • SettingsDialog.body()
    • SettingsDialog.buttonbox()
    • SettingsDialog.num_points_abs_tracer()
    • SettingsDialog.num_points_int_tracer()
    • SettingsDialog.refresh_atsas_exe_path_listing()
    • SettingsDialog.reset_to_defaults()
    • SettingsDialog.select_autorg_path()
    • SettingsDialog.show_absorbance_figure()
    • SettingsDialog.spinbox_tracer()
    • SettingsDialog.update_atsas_exe_paths()
• SerialAnalyzer.SimulatedAnnealing
  • SimulatedAnnealing
    • SimulatedAnnealing.minimize()
  • animate_annealing()
  • demo()
• SerialAnalyzer.SimulatedExtrapolation
  • SimulatedExtrapolation
    • SimulatedExtrapolation.generate_data()
    • SimulatedExtrapolation.plot_concentration_elution()
    • SimulatedExtrapolation.plot_regression()
    • SimulatedExtrapolation.plot_regression_params()
    • SimulatedExtrapolation.plot_xray_scattering()
    • SimulatedExtrapolation.plot_xray_scattering_elution()
  • SimulatedExtrapolationDialog
    • SimulatedExtrapolationDialog.body()
    • SimulatedExtrapolationDialog.buttonbox()
    • SimulatedExtrapolationDialog.draw()
    • SimulatedExtrapolationDialog.show()
• SerialAnalyzer.SpecialistOptions
  • SpecialistOptionsDialog
    • SpecialistOptionsDialog.apply()
    • SpecialistOptionsDialog.body()
    • SpecialistOptionsDialog.buttonbox()
    • SpecialistOptionsDialog.fixed_guinier_start_tracer()
    • SpecialistOptionsDialog.guinier_plot_dialog()
    • SpecialistOptionsDialog.on_entry_xb_folder()
    • SpecialistOptionsDialog.postfix_eg_update()
    • SpecialistOptionsDialog.reset_to_defaults()
    • SpecialistOptionsDialog.show()
    • SpecialistOptionsDialog.show_absorbance_figure()
    • SpecialistOptionsDialog.use_xray_conc_tracer()
    • SpecialistOptionsDialog.zx_boundary_method_tracer()
• SerialAnalyzer.SphericalModel
  • SerialXrayScattering
    • SerialXrayScattering.generate()
    • SerialXrayScattering.save()
  • UvAbsorbance
    • UvAbsorbance.generate_data()
    • UvAbsorbance.get_elutioncurve()
    • UvAbsorbance.save()
  • XrayScattering
    • XrayScattering.term1()
    • XrayScattering.term2()
  • f()
• SerialAnalyzer.SphericalModelNew
  • SerialXrayScattering
    • SerialXrayScattering.generate()
    • SerialXrayScattering.save()
  • UvAbsorbance
    • UvAbsorbance.generate_data()
    • UvAbsorbance.get_elutioncurve()
    • UvAbsorbance.save()
  • XrayScattering
    • XrayScattering.term1()
    • XrayScattering.term2()
  • f()
• SerialAnalyzer.StageExtrapolation
  • clean_tempfolders()
  • control_extrapolation()
  • do_extrapolation()
  • log_peak_info()
  • make_atsas_folder()
  • make_filename()
  • make_zx_filename()
  • output_extrapolation_params()
  • prepare_extrapolation()
• SerialAnalyzer.StageGuinier
  • compare_rg_stdev()
  • make_guinier_analysis_report()
  • run_gunier_analysis()
  • save_guinier_result()
  • update_rg_ratio_range()
  • write_gunier_stamp()
• SerialAnalyzer.StageSummary
  • MergeBooksArgs
  • do_summary()
  • do_summary_stage()
  • merge_books()
  • merge_books_impl()
• SerialAnalyzer.Uv2dLpm
  • Uv2dLpm
    • Uv2dLpm.get_params()
• SerialAnalyzer.UvBaseSurface
  • UvBaseSurface
    • UvBaseSurface.debug_plot()
    • UvBaseSurface.get_basecurve()
    • UvBaseSurface.rails
• SerialAnalyzer.ZeroExtrapolator
  • GuinierPorodAnalyzer
    • GuinierPorodAnalyzer.I
    • GuinierPorodAnalyzer.fit()
  • ZeroExtrapolator
    • ZeroExtrapolator.do_debug_plot()
    • ZeroExtrapolator.do_debug_save()
    • ZeroExtrapolator.dump_data()
    • ZeroExtrapolator.extrapolate()
    • ZeroExtrapolator.extrapolate_impl_MP_inverse()
    • ZeroExtrapolator.make_cx_vector()
    • ZeroExtrapolator.stop_check()
  • is_boundary_candidate()
  • is_boundary_candidate_simple()
  • is_boundary_reg_params()
  • make_cx_vector_impl()
• SerialAnalyzer.create_icon_image