Decomposer

Submodules

• Decomposer.ConvolutionDemo
  • Convolution
    • Convolution.eval_scaler()
  • EmgConvolutionDemo
  • Exponential
  • Gaussian
• Decomposer.CurveDecomposer
• Decomposer.DecompDemo
• Decomposer.DecompEditorDebug
  • debug_plot_impl()
• Decomposer.DecompInfo
  • DecompInfo
    • DecompInfo.get_scaled_recs()
• Decomposer.DecompResetDialog
• Decomposer.DecompUtils
  • CorrectedBaseline
  • debug_elution_plot()
  • decompose_elution_better()
  • decompose_elution_impl()
  • decompose_elution_uv_to_xray()
  • decompose_elution_xray_to_uv()
  • get_elm_info()
  • get_peak2elem_dict()
  • make_default_analysis_range_info()
  • make_range_info_impl()
• Decomposer.DecompViewer
• Decomposer.DualEvaluator
  • DualEvaluator
• Decomposer.DualOptimzer
  • DualOptimzer
    • DualOptimzer.debug_plot()
    • DualOptimzer.get_avgrec()
    • DualOptimzer.get_evaluators()
    • DualOptimzer.get_optrec()
    • DualOptimzer.init_params
    • DualOptimzer.obj_func()
    • DualOptimzer.optimize()
  • DualPairSelector
    • DualPairSelector.compute_y_for_opt()
    • DualPairSelector.get_nearest_major_peak_index()
    • DualPairSelector.is_adoptable()
    • DualPairSelector.is_optimizable_pair()
    • DualPairSelector.is_optimizable_rec()
    • DualPairSelector.select_one_pair()
  • EghaOptimzer
  • EmgaOptimzer
  • get_assert_info()
  • get_dual_optimized_info()
  • get_dual_optimized_info_old()
• Decomposer.ElutionAutoencoder
• Decomposer.ElutionDecomposer
  • ElutionDecomposer
    • ElutionDecomposer.add_other_peaks()
    • ElutionDecomposer.add_peak_at_diff_top_x()
    • ElutionDecomposer.compute_fit_recs()
    • ElutionDecomposer.compute_residual_curve()
    • ElutionDecomposer.compute_residual_error()
    • ElutionDecomposer.debug_plot()
    • ElutionDecomposer.debug_plot_fitted()
    • ElutionDecomposer.decompose_toAB()
    • ElutionDecomposer.determine_intervals_deprecated()
    • ElutionDecomposer.get_valleys_to_modify()
    • ElutionDecomposer.modify_y()
    • ElutionDecomposer.rectify_peaks()
    • ElutionDecomposer.save_components()
    • ElutionDecomposer.set_fit_res_just_from_peaks()
    • ElutionDecomposer.try_decompose()
  • proof_plot()
• Decomposer.ElutionMixtureModel
  • ElutionMixtureModel
    • ElutionMixtureModel.fit_elution()
    • ElutionMixtureModel.get_gaussians()
    • ElutionMixtureModel.plot()
  • gaussian()
  • generate_samples()
  • gmm_demo()
• Decomposer.ElutionModelEditor
  • ElutionModelEditor
    • ElutionModelEditor.body()
    • ElutionModelEditor.create_table()
    • ElutionModelEditor.draw()
    • ElutionModelEditor.show()
• Decomposer.ElutionModelScaler
  • scale_decomposed_elutions()
• Decomposer.ErrorAnalysis
  • ErrorAnalyzer
    • ErrorAnalyzer.compute_denoised_error()
    • ErrorAnalyzer.generate_noise()
  • McAnimation
    • McAnimation.anim_init()
    • McAnimation.animate()
    • McAnimation.index_generator()
    • McAnimation.on_click()
  • compute_denoised_data()
  • debug_plot_error()
  • debug_plot_smoothing()
  • simulated_svd_error_propagation_plot()
  • smoothed_error()
  • theory_simulation_2D()
• Decomposer.EvolvingFactorAnalysis
• Decomposer.ExistingNmf
  • ExistingNmf
  • ExistingNmfDemo
  • MatrixFactorization
  • nimfa_spike()
  • sklearn_nmf_spike()
• Decomposer.FactorAnalysis
  • FactorAnalysis
• Decomposer.FitRecord
  • FitRecord
    • FitRecord.get_params()
    • FitRecord.get_range_list()
    • FitRecord.scale_to()
    • FitRecord.set_evaluator()
  • sort_fit_recs()
• Decomposer.MF_Tutorial
  • MF
    • MF.full_matrix()
    • MF.get_rating()
    • MF.mse()
    • MF.sgd()
    • MF.train()
• Decomposer.ManualDecomposer
  • ManualDecomposer
    • ManualDecomposer.body()
    • ManualDecomposer.buttonbox()
    • ManualDecomposer.draw()
    • ManualDecomposer.get_params()
    • ManualDecomposer.reset()
    • ManualDecomposer.show()
  • ParamControlPanel
    • ParamControlPanel.reset()
    • ParamControlPanel.scale_tracer()
• Decomposer.MatrixFactorization
  • C_smooth_penalty_impl()
  • MatrixFactorization
    • MatrixFactorization.compute_C_error()
    • MatrixFactorization.compute_C_monot_penalty()
    • MatrixFactorization.compute_P_error()
    • MatrixFactorization.compute_deriv_C_error()
    • MatrixFactorization.compute_deriv_C_monot_penalty()
    • MatrixFactorization.compute_deriv_P_error()
    • MatrixFactorization.debug_plot()
    • MatrixFactorization.make_C_init()
    • MatrixFactorization.make_P_init()
    • MatrixFactorization.solve_C()
    • MatrixFactorization.solve_P()
  • deriv_C_smooth_penalty_impl()
• Decomposer.ModelEvaluator
  • ModelEvaluator
    • ModelEvaluator.get_all_param_values()
    • ModelEvaluator.get_all_params_string()
    • ModelEvaluator.get_func()
    • ModelEvaluator.get_model_def_expr()
    • ModelEvaluator.get_model_name()
    • ModelEvaluator.get_param_value()
    • ModelEvaluator.get_param_values()
    • ModelEvaluator.get_range_params()
    • ModelEvaluator.set_new_params()
    • ModelEvaluator.update_param()
    • ModelEvaluator.x_from_height_ratio()
• Decomposer.OptRecsUtils
  • compute_area_proportions()
  • debug_plot_opt_recs()
  • debug_plot_opt_recs_impl()
  • eoii_correct_opt_recs()
• Decomposer.ScatteringCurveModel
• Decomposer.UnifiedDecompResult
  • UnifiedDecompResult
    • UnifiedDecompResult.compute_element_score()
    • UnifiedDecompResult.compute_normalized_resid()
    • UnifiedDecompResult.compute_synthetic_score()
    • UnifiedDecompResult.get_nearest_major_peak_index()
    • UnifiedDecompResult.get_range_edit_info()
    • UnifiedDecompResult.identify_ignorable_elements()
    • UnifiedDecompResult.is_dependent_peak()
    • UnifiedDecompResult.remove_unwanted_elements()
    • UnifiedDecompResult.set_area_proportions()
    • UnifiedDecompResult.set_proportions()
    • UnifiedDecompResult.update_all_selections()
    • UnifiedDecompResult.update_one_selection()
• Decomposer.UnifiedDecompResultTest
  • unit_test()
• Decomposer.WlsDecomposer
  • WlsDecomposer
    • WlsDecomposer.solve_an_elution()