Optimizer

Submodules

• Optimizer.AdhocFigure
  • show_adhoc_figure_impl()
• Optimizer.AllParameters
  • AllParameters
    • AllParameters.body()
    • AllParameters.draw_all_parames()
    • AllParameters.set_better_geometry()
    • AllParameters.show()
• Optimizer.AscDscDifference
  • show_asc_dsc_difference()
• Optimizer.Asymptotical
  • asymptotical()
• Optimizer.BackRunner
  • BackRunner
    • BackRunner.get_callback_txt_path()
    • BackRunner.get_optjob_folder()
    • BackRunner.get_work_folder()
    • BackRunner.getpid()
    • BackRunner.poll()
    • BackRunner.revive()
    • BackRunner.run()
    • BackRunner.set_work_folder()
    • BackRunner.terminate()
  • PopenProxy
• Optimizer.BaselineOptimizer
  • BaselineOptimizer
    • BaselineOptimizer.baseline_objective()
    • BaselineOptimizer.minima_callback()
    • BaselineOptimizer.solve()
  • test_optimizer()
• Optimizer.BasicOptimizer
  • BasicOptimizer
    • BasicOptimizer.accept_test()
    • BasicOptimizer.compute_LRF_matrices()
    • BasicOptimizer.compute_comformance()
    • BasicOptimizer.compute_fv()
    • BasicOptimizer.compute_moments_list()
    • BasicOptimizer.compute_mw_integrity()
    • BasicOptimizer.compute_peak_deviation()
    • BasicOptimizer.create_lrf_info_for_debug()
    • BasicOptimizer.debug_plot_params()
    • BasicOptimizer.get_guinier_deviation()
    • BasicOptimizer.get_model_name()
    • BasicOptimizer.get_name()
    • BasicOptimizer.get_num_components()
    • BasicOptimizer.get_num_matrices()
    • BasicOptimizer.get_num_scores()
    • BasicOptimizer.get_param_bounds()
    • BasicOptimizer.get_parameter_names()
    • BasicOptimizer.get_paramslider_info()
    • BasicOptimizer.get_region_limit()
    • BasicOptimizer.get_required_params()
    • BasicOptimizer.get_score_names()
    • BasicOptimizer.get_strategy()
    • BasicOptimizer.is_stochastic()
    • BasicOptimizer.minima_callback()
    • BasicOptimizer.objective_func()
    • BasicOptimizer.objective_func_wrapper()
    • BasicOptimizer.prepare_for_optimization()
    • BasicOptimizer.reshape_xr_bounds()
    • BasicOptimizer.set_composite()
    • BasicOptimizer.set_params_scale()
    • BasicOptimizer.solve()
    • BasicOptimizer.split_as_unified_params()
    • BasicOptimizer.split_bounds()
    • BasicOptimizer.split_params_simple()
    • BasicOptimizer.to_norm_params()
    • BasicOptimizer.to_real_params()
    • BasicOptimizer.update_at_minima()
    • BasicOptimizer.update_bounds()
    • BasicOptimizer.update_bounds_hook()
    • BasicOptimizer.update_guinier_region()
    • BasicOptimizer.update_minima_props()
    • BasicOptimizer.update_primary_peak()
    • BasicOptimizer.update_rg_params()
    • BasicOptimizer.uv_baseline()
    • BasicOptimizer.write_init_callback_txt()
    • BasicOptimizer.xr_baseline()
• Optimizer.BoundaryView
  • BoundaryView
    • BoundaryView.body()
    • BoundaryView.buttonbox()
    • BoundaryView.draw_boundary_view()
    • BoundaryView.show()
• Optimizer.BoundsAnalysis
  • demo()
• Optimizer.BoundsInspection
  • BoundsInspection
    • BoundsInspection.body()
    • BoundsInspection.show()
• Optimizer.ColumnInterp
  • ColumnInterp
    • ColumnInterp.safe_index()
• Optimizer.ColumnInterpGPU
  • ColumnInterp
    • ColumnInterp.safe_index()
• Optimizer.ComplementaryView
  • ComplementaryView
    • ComplementaryView.adjust_xlim_mapping()
    • ComplementaryView.body()
    • ComplementaryView.buttonbox()
    • ComplementaryView.cancel()
    • ComplementaryView.create_popup_menu()
    • ComplementaryView.draw()
    • ComplementaryView.draw_axis_labels()
    • ComplementaryView.draw_complement_impl()
    • ComplementaryView.draw_complements()
    • ComplementaryView.get_toggle_button_text()
    • ComplementaryView.on_click()
    • ComplementaryView.show()
    • ComplementaryView.show_compare_to_pdb()
    • ComplementaryView.show_guinier_kratky_view()
    • ComplementaryView.show_guinier_kratky_view_impl()
    • ComplementaryView.show_simple_3d_view()
    • ComplementaryView.toggle_baseline()
• Optimizer.CompositeInfo
  • CompositeInfo
    • CompositeInfo.check_num_elements()
    • CompositeInfo.compute_C_matrix()
    • CompositeInfo.estimate_peak_points()
    • CompositeInfo.get_composite_ids()
    • CompositeInfo.get_composite_penalty()
    • CompositeInfo.get_composite_proportions()
    • CompositeInfo.get_composite_show_flags()
    • CompositeInfo.get_elements_rgs()
    • CompositeInfo.get_elutions()
    • CompositeInfo.get_extra_num_components()
    • CompositeInfo.get_num_components()
    • CompositeInfo.get_num_substantial_components()
    • CompositeInfo.get_valid_rgs()
    • CompositeInfo.load()
    • CompositeInfo.save()
  • convert_for_display()
• Optimizer.DefaultNumPeaks
  • get_default_num_peaks()
• Optimizer.DefaultNumPeaks-try
• Optimizer.Demo
• Optimizer.EghGradient
  • compute_gradient_impl()
• Optimizer.ElutionComposer
  • ElutionComposer
    • ElutionComposer.make_composite()
    • ElutionComposer.make_judge_info()
    • ElutionComposer.reducible()
  • make_composites_from_deviations()
• Optimizer.ElutionModelsGPU
  • egh()
  • gaussian()
• Optimizer.FactorCurvePlot
  • FactorCurvePlot
    • FactorCurvePlot.body()
    • FactorCurvePlot.draw_curves()
    • FactorCurvePlot.show()
• Optimizer.FixedBaselineOptimizer
  • FixedBaselineOptimizer
    • FixedBaselineOptimizer.minima_callback()
    • FixedBaselineOptimizer.objective_func_wrapper()
    • FixedBaselineOptimizer.prepare()
    • FixedBaselineOptimizer.solve()
  • test_optimizer()
• Optimizer.FullOptDialog
  • FullOptDialog
    • FullOptDialog.add_new_job()
    • FullOptDialog.append_result()
    • FullOptDialog.body()
    • FullOptDialog.build_panel()
    • FullOptDialog.buttonbox()
    • FullOptDialog.cancel()
    • FullOptDialog.curr_folder_tracer()
    • FullOptDialog.devel_test()
    • FullOptDialog.devel_test_back()
    • FullOptDialog.estimate_xmax()
    • FullOptDialog.export()
    • FullOptDialog.get_curr_work_folder()
    • FullOptDialog.get_job_info()
    • FullOptDialog.get_known_best_params()
    • FullOptDialog.get_progress()
    • FullOptDialog.get_skipbutton_name()
    • FullOptDialog.initialize()
    • FullOptDialog.is_busy()
    • FullOptDialog.maxnum_trials_tracer()
    • FullOptDialog.modify_restart()
    • FullOptDialog.on_entry_root_folder()
    • FullOptDialog.poll()
    • FullOptDialog.read_callback_txt()
    • FullOptDialog.run()
    • FullOptDialog.save_the_result_figure()
    • FullOptDialog.set_inspection_mode()
    • FullOptDialog.show()
    • FullOptDialog.skip_to_next_trial()
    • FullOptDialog.start_next_trial()
    • FullOptDialog.terminate()
    • FullOptDialog.try_update_information()
    • FullOptDialog.update_information()
    • FullOptDialog.update_skipbutton_name()
    • FullOptDialog.update_try_model_composing_cb()
• Optimizer.FullOptInput
  • FullOptInput
    • FullOptInput.get_base_curve()
    • FullOptInput.get_dsets()
    • FullOptInput.get_mapped_params()
    • FullOptInput.get_sd()
    • FullOptInput.get_sd_from_folder()
    • FullOptInput.restore_trimming_info()
    • FullOptInput.update_attributes()
• Optimizer.FullOptResult
  • FullOptResult
    • FullOptResult.debug_plot()
    • FullOptResult.get_best_params()
    • FullOptResult.get_class_code()
    • FullOptResult.get_demo_index()
    • FullOptResult.get_init_info()
    • FullOptResult.get_job_list()
    • FullOptResult.get_job_name()
    • FullOptResult.get_jobnames()
    • FullOptResult.get_log_file()
    • FullOptResult.get_num_jobs()
    • FullOptResult.get_optimizer()
    • FullOptResult.get_optimizer_folder()
    • FullOptResult.get_optimizer_folder_impl()
    • FullOptResult.get_optimizer_jobs_folder()
    • FullOptResult.get_result_iterator()
    • FullOptResult.get_rg_folder()
    • FullOptResult.load_callback_info()
    • FullOptResult.load_composite()
    • FullOptResult.load_info()
    • FullOptResult.load_init_params()
  • get_result_from_workfolder()
• Optimizer.FullOptUtils
  • get_class_code_from_logfile()
  • get_in_data_folder()
  • in_folder_consistency_ok()
• Optimizer.FuncImporter
  • get_objective_function_info()
  • import_objective_function()
• Optimizer.FuncReloadUtils
  • reload_optimizer()
• Optimizer.FunctionChanger
  • FunctionChanger
    • FunctionChanger.apply()
    • FunctionChanger.body()
    • FunctionChanger.show()
• Optimizer.FunctionDebugger
  • FunctionDebugger
    • FunctionDebugger.body()
    • FunctionDebugger.buttonbox()
    • FunctionDebugger.get_rg_params()
    • FunctionDebugger.get_sec_params()
    • FunctionDebugger.get_xr_params()
    • FunctionDebugger.show()
    • FunctionDebugger.show_bounds_indpection()
    • FunctionDebugger.show_norm_pameters()
    • FunctionDebugger.show_parameters()
    • FunctionDebugger.start_debugger()
    • FunctionDebugger.test()
• Optimizer.FunctionDebuggerUtils
  • create_optimizer_for_debug()
• Optimizer.FvScoreConverter
  • compute_fv_adjustment()
  • convert_score()
  • invert_score()
  • sigmoid()
• Optimizer.FvScoreDetails
  • FvScoreDetails
    • FvScoreDetails.body()
    • FvScoreDetails.show()
• Optimizer.FvScoreInspecor
  • FvScoreInspecor
    • FvScoreInspecor.body()
    • FvScoreInspecor.compute_scores()
    • FvScoreInspecor.draw_scores()
    • FvScoreInspecor.show()
• Optimizer.FvSynthesisOptimizer
  • compute_optimized_weights()
  • objective_func()
  • show_weights_performance()
• Optimizer.FvSynthesizer
  • synthesize()
  • synthesize_demo()
  • trial_demo()
• Optimizer.FvSynthesizerHistory
  • plot_history()
• Optimizer.GlobalInspector
• Optimizer.GuinierRg
  • compute_rg_params_impl()
• Optimizer.InitialInfo
  • InitialInfo
  • PeProxy
    • PeProxy.get_drift_type()
    • PeProxy.get_dsets()
    • PeProxy.get_function_class()
    • PeProxy.get_init_params()
    • PeProxy.get_maxnum_trials()
    • PeProxy.get_n_components()
    • PeProxy.get_n_iterations()
    • PeProxy.get_param_init_type()
    • PeProxy.get_sd()
    • PeProxy.get_seed()
    • PeProxy.get_treat()
    • PeProxy.load_settings()
• Optimizer.IntegerRatios
  • determine_integer_ratios()
• Optimizer.JobStateCanvas
  • JobStateCanvas
    • JobStateCanvas.change_function()
    • JobStateCanvas.change_view_widths()
    • JobStateCanvas.close()
    • JobStateCanvas.create_popup_menu_0()
    • JobStateCanvas.create_popup_menu_1()
    • JobStateCanvas.create_popup_menu_devel()
    • JobStateCanvas.create_popup_menu_prog()
    • JobStateCanvas.draw_all_parameters()
    • JobStateCanvas.draw_indexed_state()
    • JobStateCanvas.draw_main()
    • JobStateCanvas.draw_progress()
    • JobStateCanvas.draw_state()
    • JobStateCanvas.draw_state_impl()
    • JobStateCanvas.draw_suptitle()
    • JobStateCanvas.get_best()
    • JobStateCanvas.get_best_index()
    • JobStateCanvas.get_best_params()
    • JobStateCanvas.get_curr_index()
    • JobStateCanvas.get_current_fv()
    • JobStateCanvas.get_current_params()
    • JobStateCanvas.get_first()
    • JobStateCanvas.get_fv_array()
    • JobStateCanvas.get_last()
    • JobStateCanvas.get_next()
    • JobStateCanvas.get_next_best()
    • JobStateCanvas.get_params()
    • JobStateCanvas.get_previous()
    • JobStateCanvas.get_previous_best()
    • JobStateCanvas.get_remaining_time()
    • JobStateCanvas.get_running_solver_info()
    • JobStateCanvas.get_time_elapsed()
    • JobStateCanvas.get_time_started()
    • JobStateCanvas.get_view_width_button_text()
    • JobStateCanvas.get_xlim_prog_axes()
    • JobStateCanvas.guess_ending_time()
    • JobStateCanvas.inspect_score_transition()
    • JobStateCanvas.minimize_window()
    • JobStateCanvas.on_figure_click()
    • JobStateCanvas.on_focus_in()
    • JobStateCanvas.save_the_figure()
    • JobStateCanvas.sec_conformance_demo()
    • JobStateCanvas.sec_inspection()
    • JobStateCanvas.set_demo_info()
    • JobStateCanvas.set_view_widths()
    • JobStateCanvas.show_2p_analysis()
    • JobStateCanvas.show_adhoc_figure()
    • JobStateCanvas.show_asc_dsc_difference()
    • JobStateCanvas.show_boundary_view()
    • JobStateCanvas.show_complementary_view()
    • JobStateCanvas.show_function_debugger()
    • JobStateCanvas.show_fvscore_inspector()
    • JobStateCanvas.show_guinier_deviation()
    • JobStateCanvas.show_mw_integrity()
    • JobStateCanvas.show_params()
    • JobStateCanvas.show_popup_menu_0()
    • JobStateCanvas.show_popup_menu_1()
    • JobStateCanvas.show_popup_menu_devel()
    • JobStateCanvas.show_popup_menu_prog()
    • JobStateCanvas.show_residual_view()
    • JobStateCanvas.show_rg_visible_figure()
    • JobStateCanvas.show_score_details()
    • JobStateCanvas.show_sdm_investigator()
    • JobStateCanvas.show_sdm_lrf_investigator()
    • JobStateCanvas.show_sec_conformance()
    • JobStateCanvas.show_simple_3d_view()
    • JobStateCanvas.show_this_figure()
    • JobStateCanvas.show_vp_analysis()
    • JobStateCanvas.test_update_guinier_region()
    • JobStateCanvas.update_init_state()
    • JobStateCanvas.update_view_width_button()
• Optimizer.JobStateInfo
  • JobStateInfo
    • JobStateInfo.get_active_indeces()
    • JobStateInfo.get_demo_info()
    • JobStateInfo.get_dsets_from_work_folder()
    • JobStateInfo.get_init_info()
    • JobStateInfo.get_optlogfile()
    • JobStateInfo.get_ready_from_folder()
    • JobStateInfo.prepare_for_demo()
    • JobStateInfo.prepare_init_state()
    • JobStateInfo.set_demo_info()
    • JobStateInfo.set_init_info()
• Optimizer.LrfExporter
  • GraphicResult
    • GraphicResult.export()
  • LrfExporter
    • LrfExporter.export()
    • LrfExporter.get_graphic_result()
  • XrLrfResult
    • XrLrfResult.export()
• Optimizer.LrfOptimizer
  • optimize_decomposition_for_lrf()
• Optimizer.ModelDataSet
• Optimizer.ModifyStateDialog
  • ModifyStateDialog
    • ModifyStateDialog.apply()
    • ModifyStateDialog.body()
    • ModifyStateDialog.buttonbox()
    • ModifyStateDialog.evaluate()
    • ModifyStateDialog.get_enhanced_params()
    • ModifyStateDialog.get_pe_proxy()
    • ModifyStateDialog.make_a_new_suggestion()
    • ModifyStateDialog.show()
    • ModifyStateDialog.show_parameters()
    • ModifyStateDialog.start()
• Optimizer.MwIntegrity
  • MwIntegrityPlot
    • MwIntegrityPlot.body()
    • MwIntegrityPlot.buttonbox()
    • MwIntegrityPlot.draw_mws()
    • MwIntegrityPlot.show()
  • compute_mw_integrity_impl()
• Optimizer.NaviFrame
  • NaviFrame
• Optimizer.NpSharedMemory
  • NpSharedMemory
    • NpSharedMemory.close()
    • NpSharedMemory.unlink()
  • close_shared_memory()
  • create_shm_singleton()
  • destroy_shm_singleton()
  • get_shm_proxy()
  • get_shm_singleton()
• Optimizer.NumComponents
  • NumComponents
    • NumComponents.get()
    • NumComponents.get_decomp_result()
    • NumComponents.guess()
    • NumComponents.guess_from_decomp_opt_recs()
• Optimizer.NumericalUtils
  • safe_ratios()
  • safe_ratios_debug_plot()
• Optimizer.OptConstants
• Optimizer.OptDataSets
  • OptDataSets
    • OptDataSets.compute_weight_info()
    • OptDataSets.get_opt_weight_info()
    • OptDataSets.relocate_rg_folder()
  • get_current_rg_folder()
  • get_dsets_impl()
• Optimizer.OptJobInfo
  • OptJobInfo
    • OptJobInfo.load()
    • OptJobInfo.update_state()
• Optimizer.OptJobResultInfo
  • OptJobResultInfo
• Optimizer.OptLogFile
  • OptLogFile
    • OptLogFile.get_active_indeces()
• Optimizer.OptLrfInfo
  • OptLrfInfo
    • OptLrfInfo.compute_rg_params()
    • OptLrfInfo.estimate_uv_peak_points()
    • OptLrfInfo.estimate_xr_peak_points()
    • OptLrfInfo.get_num_substantial_components()
    • OptLrfInfo.get_scaled_xr_params()
    • OptLrfInfo.get_uv_cy_list()
    • OptLrfInfo.get_uv_proportions()
    • OptLrfInfo.get_valid_rgs()
    • OptLrfInfo.get_xr_cy_list()
    • OptLrfInfo.get_xr_proportions()
    • OptLrfInfo.update_optimizer()
  • get_ratio_cy_list()
• Optimizer.OptLrfInfoDebug
  • OptLrfInfoProxy
• Optimizer.OptStrategyDialog
  • OptStrategyDialog
    • OptStrategyDialog.apply()
    • OptStrategyDialog.apply_mw_integrity_tracer()
    • OptStrategyDialog.apply_rg_discreteness_tracer()
    • OptStrategyDialog.body()
    • OptStrategyDialog.buttonbox()
    • OptStrategyDialog.el_option_tracer()
    • OptStrategyDialog.elution_model_gui_tracer()
    • OptStrategyDialog.excl_limit_tracer()
    • OptStrategyDialog.get_model_name()
    • OptStrategyDialog.get_num_peaks()
    • OptStrategyDialog.get_options()
    • OptStrategyDialog.nc_option_tracer()
    • OptStrategyDialog.num_peaks_tracer()
    • OptStrategyDialog.on_entry_rg_folder()
    • OptStrategyDialog.optimization_strategy_tracer()
    • OptStrategyDialog.separate_eoii_type_tracer()
    • OptStrategyDialog.show()
    • OptStrategyDialog.show_mwrg_figure()
    • OptStrategyDialog.show_strategy_editor()
    • OptStrategyDialog.show_trimming_figure()
    • OptStrategyDialog.trimming_strategy_tracer()
    • OptStrategyDialog.try_model_composing_tracer()
    • OptStrategyDialog.update_separate_eoii_flags()
    • OptStrategyDialog.update_separate_eoii_simple()
    • OptStrategyDialog.validate()
• Optimizer.OptimalElution
• Optimizer.OptimizerMain
  • optimizer_main()
• Optimizer.OptimizerSettings
  • OptimizerSettings
    • OptimizerSettings.get()
    • OptimizerSettings.keys()
    • OptimizerSettings.load()
    • OptimizerSettings.save()
  • delayed_settings_init()
  • get_advanced_settings_text()
  • get_settings_path()
• Optimizer.OptimizerUtils
  • OptimizerResult
  • get_impl_method_name()
  • get_method_name()
  • get_model_name()
  • show_peak_editor_impl()
• Optimizer.ParameterTransition
  • show_parameter_transition_impl()
• Optimizer.ParameterTransitionPlot
  • ParameterTransitionPlot
    • ParameterTransitionPlot.body()
    • ParameterTransitionPlot.buttonbox()
    • ParameterTransitionPlot.draw_transition()
    • ParameterTransitionPlot.show()
  • plot_transition_impl()
• Optimizer.ParamsAdjuster
  • ParamsAdjuster
    • ParamsAdjuster.add_new_components()
    • ParamsAdjuster.get_params_for()
    • ParamsAdjuster.remove_extra_components()
• Optimizer.ParamsInspection
  • ParamsInspection
    • ParamsInspection.body()
    • ParamsInspection.buttonbox()
    • ParamsInspection.highlight()
    • ParamsInspection.save()
    • ParamsInspection.show()
    • ParamsInspection.show_conformance()
    • ParamsInspection.show_simulator()
• Optimizer.ParamsIterator
  • create_iterator()
  • iterator_test_from_dialog()
• Optimizer.ParamsSelector
  • ParamsSelector
    • ParamsSelector.body()
    • ParamsSelector.get_selection()
    • ParamsSelector.ok()
    • ParamsSelector.set_selection()
    • ParamsSelector.show()
• Optimizer.PenaltyUtils
  • compute_mapping_penalty()
• Optimizer.RatioInterpretIllust
  • ratio_interpret_illust()
• Optimizer.ResidualView
  • ResidualView
    • ResidualView.body()
    • ResidualView.buttonbox()
    • ResidualView.draw_residual_view()
    • ResidualView.show()
• Optimizer.RestartPatcher
  • RestartPatcher
    • RestartPatcher.apply()
    • RestartPatcher.preview()
  • patch_and_restart()
  • patch_and_restart_from_editor()
  • patch_and_restart_impl()
• Optimizer.ResultAnimation
  • show_result_animation_impl()
• Optimizer.ResultFolderSelector
  • ResultFolderSelector
    • ResultFolderSelector.apply()
    • ResultFolderSelector.body()
    • ResultFolderSelector.buttonbox()
    • ResultFolderSelector.get_logger()
    • ResultFolderSelector.get_result()
    • ResultFolderSelector.show()
  • job_folder_applier()
  • job_folder_checker()
  • joblist_folder_applier()
  • joblist_folder_checker()
  • parameter_transition_brigde()
  • result_animation_bridge()
  • result_viewer_impl()
  • show_result_folder_selector_impl()
• Optimizer.ResultProxy
  • ResultProxy
    • ResultProxy.get_optimizer()
• Optimizer.RgCurveInspect
  • rg_curve_inspect()
• Optimizer.RgDiscreteness
  • compute_rg_discreteness()
• Optimizer.RgSecUpdater
  • update_optimizer_impl()
• Optimizer.RgVisibleFigure
  • RgVisibleFigure
    • RgVisibleFigure.body()
    • RgVisibleFigure.draw_figure()
    • RgVisibleFigure.get_secparams()
    • RgVisibleFigure.show()
• Optimizer.ScaleAdjustInspect
  • scale_adjust_inspect()
• Optimizer.ScoreTransition
  • ScoreTransition
    • ScoreTransition.body()
    • ScoreTransition.buttonbox()
    • ScoreTransition.draw_score()
    • ScoreTransition.get_best()
    • ScoreTransition.get_best_index()
    • ScoreTransition.get_first()
    • ScoreTransition.get_last()
    • ScoreTransition.get_next()
    • ScoreTransition.get_next_best()
    • ScoreTransition.get_params()
    • ScoreTransition.get_previous()
    • ScoreTransition.get_previous_best()
    • ScoreTransition.show()
• Optimizer.SecConformance
  • SecConformance
    • SecConformance.body()
    • SecConformance.buttonbox()
    • SecConformance.get_sheet_data_list()
    • SecConformance.make_data_sheet()
    • SecConformance.make_pseudo_result()
    • SecConformance.show()
    • SecConformance.show_sec_conformance()
• Optimizer.SecInspection
  • SecInspection
    • SecInspection.body()
    • SecInspection.create_popup_menu()
    • SecInspection.draw_factor_curves()
    • SecInspection.get_rg_params()
    • SecInspection.get_sec_params()
    • SecInspection.get_values()
    • SecInspection.get_xr_params()
    • SecInspection.on_figure_click()
    • SecInspection.rest_synchronizing()
    • SecInspection.show()
    • SecInspection.show_popup_menu()
    • SecInspection.start_interactive()
    • SecInspection.sychrionize()
• Optimizer.SettingsSerializer
  • serialize()
  • serialize_for_optimizer()
  • unserialize()
  • unserialize_for_optimizer()
• Optimizer.SimpleDebugUtils
  • copycreate_optimizer()
  • debug_optimizer()
• Optimizer.StateSequence
  • StateSequence
    • StateSequence.get_in_folder()
    • StateSequence.get_info()
    • StateSequence.get_info_from_folder()
    • StateSequence.get_nc()
    • StateSequence.insert()
  • read_callback_txt_impl()
  • read_seed_txt()
  • save_opt_params()
• Optimizer.StrategicOptimizer
  • StrategicOptimizer
    • StrategicOptimizer.minima_callback()
    • StrategicOptimizer.objective_func_wrapper()
    • StrategicOptimizer.solve()
• Optimizer.StrategyEditor
  • StrategyEditor
    • StrategyEditor.body()
    • StrategyEditor.show()
• Optimizer.StructureFactorBounds
  • StructureFactorBounds
    • StructureFactorBounds.compute_bounded_bq()
    • StructureFactorBounds.compute_penalty()
    • StructureFactorBounds.estimate_L()
    • StructureFactorBounds.get_bounds()
• Optimizer.StructureFactorBoundsDemo
  • demo()
  • demo_for_debugger()
  • proof1()
• Optimizer.SvdTutorial
  • SvdTutorial
    • SvdTutorial.body()
    • SvdTutorial.buttonbox()
    • SvdTutorial.draw()
    • SvdTutorial.show()
• Optimizer.TheDebugUtils
  • convert_score_list()
  • plot_decomp_elements()
  • plot_decomp_result()
  • plot_decomp_result_titles()
  • plot_mapped_curve()
  • plot_scores()
• Optimizer.TheUtils
  • convert_to_peak_significances()
  • get_analysis_folder_from_work_folder()
  • get_optimizer_folder()
  • get_optjob_folder_impl()
  • get_sd_from_folder_impl()
  • get_treatment_path()
  • get_work_info()
  • get_work_info_for_demo()
  • guess_n_compnents_trial()
• Optimizer.TwoParamAnalysis
  • TwoParamAnalysis
    • TwoParamAnalysis.body()
    • TwoParamAnalysis.build_control_frame()
    • TwoParamAnalysis.buttonbox()
    • TwoParamAnalysis.cancel()
    • TwoParamAnalysis.change_state()
    • TwoParamAnalysis.compute_surface()
    • TwoParamAnalysis.draw_function()
    • TwoParamAnalysis.get_area()
    • TwoParamAnalysis.get_suptitle_text()
    • TwoParamAnalysis.get_zoom_area_ratio()
    • TwoParamAnalysis.on_arrow_touch()
    • TwoParamAnalysis.redraw()
    • TwoParamAnalysis.select_default_params()
    • TwoParamAnalysis.set_trace_xy()
    • TwoParamAnalysis.show()
    • TwoParamAnalysis.show_params_inspect()
    • TwoParamAnalysis.show_params_selector()
    • TwoParamAnalysis.two_param_func()
• Optimizer.UvBaselineEstimator
  • UvBaselineEstimator
    • UvBaselineEstimator.minima_callback()
    • UvBaselineEstimator.objective_func_wrapper()
    • UvBaselineEstimator.prepare()
    • UvBaselineEstimator.solve()
  • test_estimate_uvbaseline_impl()
• Optimizer.ValidComponents
  • ValidComponents
    • ValidComponents.get_valid_vector()
    • ValidComponents.update()
• Optimizer.WFM
  • proof()
• Optimizer.XrStateFigure
  • show_this_figure_impl()
• Optimizer.XrUvScaleRatio
  • xruv_scale_ratio_penalty()
• Optimizer.optimizer
  • main()
  • main_impl()
  • main_tk()
• Optimizer.temp
  • test_it()