Theory

Submodules

• Theory.Anisotropy
  • Anisotropy
    • Anisotropy.fit_curve()
    • Anisotropy.get_curve()
    • Anisotropy.get_params()
  • demo()
  • ellipsoid_scale()
• Theory.BoundedLRF
  • bounds()
  • construct_bounds()
  • demo()
  • fit_exp_dist()
  • optimize_impl()
  • plot_P()
  • spike()
• Theory.Conjugate
  • compute_conjugate_solutin()
  • spike()
• Theory.DjKinning1984
  • G()
  • P0()
  • P1()
  • P2()
  • S()
  • S0()
  • S1()
  • demo1()
• Theory.EllipsoidPlot
  • demo1()
  • ellipsoid_xyz()
• Theory.JsPedersen1997
  • F1()
  • P5()
  • P6()
  • P6d()
  • SolidEllipsoidRev
    • SolidEllipsoidRev.fit()
    • SolidEllipsoidRev.intensity()
  • TriAxialEllipsoid
    • TriAxialEllipsoid.fit()
    • TriAxialEllipsoid.intensity()
  • demo()
  • demo2()
  • r5()
  • r6()
• Theory.JsPedersen1997-bak
• Theory.ModelData
  • ModelData
    • ModelData.get_data()
  • demo1()
  • demo2()
• Theory.OrnsteinZernike
  • compute_rdf()
  • compute_rdf_prism()
  • compute_rdf_pyoz()
  • compute_sq()
  • demo()
• Theory.PbMoore1980
  • Bt()
  • Ct()
  • Ish2Iq()
  • Yt()
  • demo()
  • ift_intensities()
  • shannon_channels()
  • shannon_intensities()
• Theory.PdbCrysolRoute
  • CrysolResultsEntry
    • CrysolResultsEntry.apply()
    • CrysolResultsEntry.body()
    • CrysolResultsEntry.get_file_paths()
    • CrysolResultsEntry.show()
    • CrysolResultsEntry.validate()
  • PdbCrysolRouteDialog
    • PdbCrysolRouteDialog.body()
    • PdbCrysolRouteDialog.buttonbox()
    • PdbCrysolRouteDialog.draw_curves()
    • PdbCrysolRouteDialog.get_info()
    • PdbCrysolRouteDialog.show()
  • compare_to_pdb_impl()
  • demo()
• Theory.RDF
  • demo2()
  • demo_mdtraj()
• Theory.RdfCheck
  • demo()
• Theory.Rg
  • compute_Rg()
  • compute_corrected_Rg()
  • compute_corrected_Rg_impl()
• Theory.RoigSolvas2019
  • Anisotropy
    • Anisotropy.approx_intensities()
    • Anisotropy.fit()
    • Anisotropy.fit_approx()
  • demo()
  • ellipsoid_approx_intensities()
• Theory.RotationMatrix
  • rand_rotation_matrix()
  • rotate_3d_mesh()
• Theory.SfBound
  • S0_bound()
  • demo()
• Theory.SolidSphere
  • SolidSphere
    • SolidSphere.fit()
    • SolidSphere.intensity()
  • a_func()
  • b_to_a_func()
  • demo1()
  • demo2()
  • demo3()
  • demo4()
  • f()
  • f_imp()
  • find_boundary()
  • get_boundary_params()
  • get_boundary_params_simple()
  • phi()
  • phi_j1()
  • plot_boundary()
• Theory.SpherePlot
  • demo1()
  • sphere_xyz()
• Theory.SphericalFit
  • compute_bq_score()
  • conc_pick()
  • debug_plot()
  • demo()
  • estimate_L()
  • estimate_LR()
• Theory.StructureFactor
  • demo1()
• Theory.Survey
  • bq_scores_survey()
  • bq_scores_survey_for_a_folder()
  • compute_bq_scores_for_all_peaks()
  • get_sd()
• Theory.SynthesizedLRF
  • demo()
  • get_reduced_conc()
  • synthesized_lrf()
  • synthesized_lrf_spike()
• Theory.TdGrant2022
  • demo()
• Theory.WLS
  • npWLS()
  • npWLS_spike()