Molass Legacy Reference#
Molass Legacy is an open-source version of MOLASS, an analytical tool for SEC-SAXS experiment data currently hosted at Photon Factory.
It can be installed via pip as follows:
pip install molass_legacy
And run from the command line as follows:
molass
See the User’s Guide at the original MOLASS page for more information on how to use it.
Main Function#
Module Functions#
- get_version(toml_only=False)#
Retrieve the version of the package from pyproject.toml or importlib.metadata.
This function prioritizes reading the version from pyproject.toml to ensure that the local repository version is used during development or testing. If pyproject.toml is not found, it falls back to using importlib.metadata to retrieve the version of the installed package.
Parameters:#
- toml_only: bool, optional
If True, the function strictly reads the version from pyproject.toml. This is crucial to avoid confusion about the version being used, which can lead to significant time loss during testing. (confusion about the local repository versus the installed).
If False, the function attempts to read the version from pyproject.toml first. If pyproject.toml does not exist, which means you are using the installed package, it falls back to using importlib.metadata to retrieve this version.
Raises:#
- AssertionError:
If toml_only is True but pyproject.toml is not found. This ensures that the function behaves predictably in cases where the local repository is not available.
This docstring was improved in collaboration with GitHub Copilot.
Submodules#
- Alsaker
- ATSAS
- AutorgKek
- Submodules
- AutorgKek.AppVersion
- AutorgKek.AtsasTools
- AutorgKek.BiComponentSolver
- AutorgKek.ClientServer
- AutorgKek.CommandLineOptions
- AutorgKek.CommandMain
- AutorgKek.CommandMainUtils
- AutorgKek.DataModels
- AutorgKek.DataModelsAgg
- AutorgKek.DataModelsTripple
- AutorgKek.ErrorResult
- AutorgKek.Guinier
- AutorgKek.GuinierInterval
- AutorgKek.GuinierPorodFit
- AutorgKek.HeadAnomalies
- AutorgKek.IntensityData
- AutorgKek.KekTools
- AutorgKek.KekToolsGP
- AutorgKek.LightObjects
- AutorgKek.LinRegSmoother
- AutorgKek.LinearModel
- AutorgKek.ODR_WLS
- AutorgKek.QrgLimitsAdjuster
- AutorgKek.Quality
- AutorgKek.Result
- AutorgKek.ResultPrinter
- AutorgKek.SAngler_WLS
- AutorgKek.Settings
- AutorgKek.SmoothSpline
- AutorgKek.WLS_Basics
- AutorgKek.WLS_Rg
- Submodules
- Baseline
- Submodules
- Baseline.BaseEstimater
- Baseline.BaseScattering
- Baseline.Baseline
- Baseline.BaselineGuinier
- Baseline.BaselineInspect
- Baseline.BaselineUtils
- Baseline.BoBaseline
- Baseline.BpaInspect
- Baseline.Constants
- Baseline.Convex
- Baseline.Debug
- Baseline.Demo
- Baseline.FoulingBaseline
- Baseline.Inspect
- Baseline.IntegralBaseline
- Baseline.LambertBeer
- Baseline.LambertBeerProof
- Baseline.LambertBeerTester
- Baseline.LinearAdjustment
- Baseline.LinearBaseline
- Baseline.LpmInspect
- Baseline.LpmInspect_for_paper
- Baseline.LpmProxy
- Baseline.MpiAlgebra
- Baseline.PatchUtils
- Baseline.ScatteringBaseline
- Baseline.UvBaseCurve
- Baseline.UvBaseSpline
- Baseline.UvBaseline
- Submodules
- Batch
- BoundedLRF
- CFSD
- CharFunc
- Conc
- DataStructure
- Submodules
- DataStructure.AnalysisRangeInfo
- DataStructure.BaseSurface
- DataStructure.BaseSurfaceDemo
- DataStructure.CorrectedData
- DataStructure.CrysolUtils
- DataStructure.DataDebugger
- DataStructure.EmgPeak
- DataStructure.InputData
- DataStructure.InputDataUtils
- DataStructure.LPM
- DataStructure.MatrixData
- DataStructure.MdViewer
- DataStructure.MeasuredData
- DataStructure.ModeledData
- DataStructure.PeakInfo
- DataStructure.RangeInfo
- DataStructure.RawData
- DataStructure.ScatteringCurvePlotter
- DataStructure.SvdDataSaver
- DataStructure.SvdDenoise
- DataStructure.SvdTutorial
- DataStructure.SvdViewer
- DataStructure.UvData
- DataStructure.UvSpecCurve
- DataStructure.XrSpecCurve
- DataStructure.XrayData
- Submodules
- Decomposer
- Submodules
- Decomposer.ConvolutionDemo
- Decomposer.CurveDecomposer
- Decomposer.DecompDemo
- Decomposer.DecompEditorDebug
- Decomposer.DecompInfo
- Decomposer.DecompResetDialog
- Decomposer.DecompUtils
- Decomposer.DecompViewer
- Decomposer.DualEvaluator
- Decomposer.DualOptimzer
- Decomposer.ElutionAutoencoder
- Decomposer.ElutionDecomposer
- Decomposer.ElutionMixtureModel
- Decomposer.ElutionModelEditor
- Decomposer.ElutionModelScaler
- Decomposer.ErrorAnalysis
- Decomposer.EvolvingFactorAnalysis
- Decomposer.ExistingNmf
- Decomposer.FactorAnalysis
- Decomposer.FitRecord
- Decomposer.MF_Tutorial
- Decomposer.ManualDecomposer
- Decomposer.MatrixFactorization
- Decomposer.ModelEvaluator
- Decomposer.OptRecsUtils
- Decomposer.ScatteringCurveModel
- Decomposer.UnifiedDecompResult
- Decomposer.UnifiedDecompResultTest
- Decomposer.WlsDecomposer
- Submodules
- DENSS
- Submodules
- DENSS.denss
B2u()
NumbaDeprecationWarning
NumbaPendingDeprecationWarning
P2Rg()
PDB
PDB2MRC
PDB2SAS
Sasrec
abs2()
abs2_fast()
align()
align2xyz()
align_multiple()
average_pairs()
average_two()
binary_average()
calc_chi2()
calc_fsc()
calc_rg_I0_by_guinier()
calc_rg_by_guinier_first_2_points()
calc_rg_by_guinier_peak()
calc_rho0()
calc_uniform_shell()
cap_heights()
center_of_circle_from_sphere_intersection()
center_rho()
center_rho_roll()
check_if_raw_data()
chi2()
clean_up_data()
coarse_then_fine_alignment()
create_lowq()
denss_3DFs()
direct_I2P()
ecdf()
equation_of_plane_from_sphere_intersection()
estimate_dmax()
estimate_side_from_pdb()
euler2matrix()
euler_grid_search()
filter_P()
find_nearest_i()
formfactor()
fsc2res()
generate_enantiomers()
grid_center()
inertia_tensor()
largest_indices()
loadDatFile()
loadFitFile()
loadOldFitFile()
loadOutFile()
loadProfile()
map
minimize_rho()
minimize_rho_score()
multi_average_two()
myabs()
mybinmean()
mybinmean_optimized()
myfftn()
myifftn()
myirfftn()
mylog()
mymean()
myones()
myrfftn()
mysqrt()
mystd()
mysum()
myzeros()
myzeros_like()
object
pad_rho()
parse_arguments()
partial
pdb2F_multigauss()
pdb2F_simple_gauss_by_radius()
pdb2map_FFT()
pdb2map_multigauss()
pdb2map_simple_gauss_by_radius()
pdb2support_SES()
pdb2support_fast()
pdb2support_vdW()
principal_axes()
principal_axis_alignment()
range
read_mrc()
real_space_correlation_coefficient()
realspace_formfactor()
realspace_gaussian_formfactor()
reciprocalspace_gaussian_formfactor()
reconstruct_abinitio_from_scattering_profile()
regrid_Iq()
rho2rg()
rho_overlap_score()
rotate_coordinates()
running_mean()
select_best_enantiomer()
select_best_enantiomers()
shrinkwrap_by_density_value()
shrinkwrap_by_volume()
sigmoid()
sigmoid_find_x_value_given_y()
sphere()
sphere_radius_from_volume()
sphere_volume_from_radius()
spherical_cap_volume()
spherical_to_euler()
store_parameters_as_string()
str
transform_rho()
u2B()
v2B()
write_mrc()
write_xplor()
zip
zoom_rho()
- Submodules
- Submodules
- DENSS.resources
- DENSS.denss
- Submodules
- Submodules
- DevelUtils
- Distance
- ExcelProcess
- DMM
- EFA
- Elution
- Env
- Error
- Estimators
- Submodules
- Estimators.BaseEstimator
- Estimators.EdmEstimator
- Estimators.EghEstimator
- Estimators.FdEmgEstimator
- Estimators.LjEghEstimator
- Estimators.RtEmgEstimator
- Estimators.SdmEstimator
- Estimators.SdmEstimatorDebug
- Estimators.SdmEstimatorImpl
- Estimators.SdmEstimatorProxy
- Estimators.StcEstimator
- Estimators.TestTools
- Submodules
- ExcelProcess
- Experiment
- Extrapolation
- Submodules
- Extrapolation.AlmergeAnalyzer
- Extrapolation.AutoRangeInspector
- Extrapolation.ConcOptsDialog
- Extrapolation.ConjugateGradientDemo
- Extrapolation.ConjugateGradientThreeD
- Extrapolation.ExSolver
- Extrapolation.ExtrapolSolverDialog
- Extrapolation.ExtrapolationAnimation
- Extrapolation.ExtrapolationControlPanel
- Extrapolation.ExtrapolationDebugger
- Extrapolation.ExtrapolationDenssMenu
- Extrapolation.ExtrapolationProof
- Extrapolation.ExtrapolationSolver
- Extrapolation.KnownPeakPenalty
- Extrapolation.KnownPeakPenaltyNumba
- Extrapolation.MatrixFactorAlternate
- Extrapolation.PeakSetSelector
- Extrapolation.PreviewButtonFrame
- Extrapolation.PreviewController
- Extrapolation.PreviewData
- Extrapolation.PreviewResultSaver
- Extrapolation.RangeInspector
- Extrapolation.RankInspection
- Extrapolation.ScatteringCurveViewer
- Extrapolation.SmoothFactorizer
- Extrapolation.SmoothnessPenalty
- Extrapolation.SmoothnessPenaltyNumba
- Extrapolation.WeightedLRF
- Submodules
- Factors
- Global
- Gmm
- GuinierAnalyzer
- Submodules
- GuinierAnalyzer.AutorgKekAdapter
- GuinierAnalyzer.GuinierDiffViewer
- GuinierAnalyzer.GuinierViewer
- GuinierAnalyzer.SimpleGuinier
- GuinierAnalyzer.SimpleGuinierAnalyzer
- GuinierAnalyzer.SimpleGuinierAnimation
- GuinierAnalyzer.SimpleGuinierDemo
- GuinierAnalyzer.SimpleGuinierFolderAnalyzer
- GuinierAnalyzer.SimpleGuinierGuiUtils
- GuinierAnalyzer.SimpleGuinierMain
- GuinierAnalyzer.SimpleGuinierScore
- GuinierAnalyzer.SimpleGuinierScoreDialog
- GuinierAnalyzer.SimpleGuinierTester
- Submodules
- GuinierTools
- Submodules
- GuinierTools.Alsaker2017
- GuinierTools.Alsaker2017_Test
- GuinierTools.CompareGdevMeasures
- GuinierTools.CpdDecompDirect
- GuinierTools.CpdDecompIndirect
- GuinierTools.CpdDecompIndirectImpl
- GuinierTools.CpdDecompUtils
- GuinierTools.GuinierDeviation
- GuinierTools.GuinierDeviationTester
- GuinierTools.RgComputer
- GuinierTools.RgCurveDbMaker
- GuinierTools.RgCurveUtils
- Submodules
- GuiParts
- HdcTheory
- Hplc
- ICIS
- IFT
- InputProcess
- Irregular
- Jupyter
- KDE
- KekLib
get_version_string()
- Submodules
- KekLib.Affine
- KekLib.ArgParser
- KekLib.BasicUtils
AutoVivifiedDict
Struct
auto_numbered_file()
clear_dirs_with_retry()
exe_name()
get_caller_module()
get_filename_extension()
get_home_folder()
home_dir()
is_almost_empty_dir()
is_empty_dir()
is_usedfolder()
make_indecies_text()
mkdirs_with_retry()
num_files_in()
open_w_safely()
ordinal_str()
print_exception()
rename_existing_file()
rename_with_retry()
- KekLib.BraceWidgets
- KekLib.CallStack
- KekLib.Canvas3D
- KekLib.CanvasDialog
- KekLib.CanvasFrame
- KekLib.ChangeableLogger
- KekLib.CircleGeometry
- KekLib.CleanerThread
- KekLib.Console
- KekLib.ContextUtils
- KekLib.ControlKeyState
- KekLib.CustomMessageBox
- KekLib.DDList
- KekLib.DebugCanvas
- KekLib.DebugPlot
DebugPlot
DialogWrapper
Dp
annotate()
axes()
cla()
clf()
close()
debug_plot_close()
debug_plot_ok()
exec_in_threaded_mainloop()
figure()
gca()
gcf()
get_current_dialog()
get_dp()
get_parent()
legend()
plot()
pop()
push()
quit_threaded_mainloop()
set_global_opts()
set_plot_env()
setp()
show()
subplots()
subplots_adjust()
switch_backend()
tight_layout()
update()
- KekLib.DebugPlotUtils
- KekLib.DebugUtils
- KekLib.DiffUtils
- KekLib.DisguinsingWidgets
- KekLib.DpiAware
- KekLib.DraggableArrow
- KekLib.DraggableCurves
- KekLib.DraggableListbox
- KekLib.DynamicObjects
- KekLib.EnvironCheck
- KekLib.EvalUtils
- KekLib.ExcelCOM
- KekLib.ExcelLogChart
- KekLib.ExceptionTracebacker
- KekLib.FileTimeUtils
- KekLib.GeometryUtils
- KekLib.Gmail
- KekLib.GuPy
- KekLib.HookableMessageBox
- KekLib.HtmlColorNames
- KekLib.ImportUtils
- KekLib.IntegrateUtils
- KekLib.KillableThread
- KekLib.KnownPaths
- KekLib.LinkedToplevel
- KekLib.ListingFrame
- KekLib.LmfitThreadSafe
- KekLib.LogDiff
- KekLib.LogicalExpression
- KekLib.MachineTypes
- KekLib.MatplotlibUtils
- KekLib.MemoryUtils
- KekLib.MenuButton
- KekLib.MessageBoxUtils
- KekLib.MinimalTiff
- KekLib.MplAnnotate
- KekLib.MplCanvas
- KekLib.MplUtils
- KekLib.MultiMonitor
- KekLib.NaturalSort
- KekLib.NoseTools
- KekLib.NoseUtils
- KekLib.NumInverse
- KekLib.NumpyArrayUtils
- KekLib.NumpyUtils
- KekLib.OnTheFlyUtils
- KekLib.OpenPyXlUtil
- KekLib.OpenPyXlUtils
- KekLib.OurColorMaps
- KekLib.OurCommonDialog
- KekLib.OurCurvature
- KekLib.OurException
- KekLib.OurGeomdl
- KekLib.OurGini
- KekLib.OurGiniSOF
- KekLib.OurImageIO
- KekLib.OurImporter
- KekLib.OurManim
- KekLib.OurManim3D
- KekLib.OurMatplotlib
- KekLib.OurMatplotlib3D
- KekLib.OurMessageBox
- KekLib.OurMmap
- KekLib.OurMock
- KekLib.OurMultiprocessing
- KekLib.OurNavigationToolbar
- KekLib.OurPipApi
- KekLib.OurPlotUtils
- KekLib.OurProfiler
- KekLib.OurScreenShot
- KekLib.OurStatsModels
- KekLib.OurSubprocess
- KekLib.OurTk
- KekLib.OurTkinter
- KekLib.OurToplevel
- KekLib.OurTtk
- KekLib.PathUtils
- KekLib.PersistentInfo
- KekLib.PersistentPy
- KekLib.PlotUtils
- KekLib.PolygonGeometry
- KekLib.Polynomial
- KekLib.PopupMenuUtils
- KekLib.ProgressInfo
- KekLib.ProgressInfoDialog
- KekLib.ProgressInfoDialog-test
- KekLib.ProgressMinDialog
- KekLib.ReadOnlyText
- KekLib.RecentFolders
- KekLib.RollingStats
- KekLib.RunAsAdmin
- KekLib.RunPython
- KekLib.SaferSpinbox
- KekLib.SciPyCookbook
- KekLib.SciPyMisc
- KekLib.ScipyUtils
- KekLib.ScrolledFrame
- KekLib.SharedArray
- KekLib.SharedArrayTry
- KekLib.SharedArrays
- KekLib.Shutdown
- KekLib.SimulatedAnnealing
- KekLib.SingleInstance
- KekLib.SliceUtils
- KekLib.SplashScreen
- KekLib.StdoutLogger
- KekLib.StdoutRedirector
- KekLib.SubProcess
- KekLib.TestTkUtils
- KekLib.TestUtils
- KekLib.TextShowDialog
- KekLib.ThreadUtils
- KekLib.ThreeDimUtils
- KekLib.TimeUtils
- KekLib.TkAppInit
- KekLib.TkCustomWidgets
- KekLib.TkDebugDnd
- KekLib.TkMiniTable
- KekLib.TkMplUtils
- KekLib.TkSizableWidgets
- KekLib.TkSupplements
- KekLib.TkTableWrapper
- KekLib.TkTableWrapper-orig
- KekLib.TkTester
- KekLib.TkUtils
- KekLib.Unicode
- KekLib.UpdateDailog
- KekLib.VersionUtils
- KekLib.WindowSizeTester
- KekLib.mplclofa
- Kratky
- LoaderProcess
- LRF
- Mapping
- Submodules
- Mapping.CurveSimilarity
- Mapping.ElutionMapper
- Mapping.ElutionMapperAdjuster
- Mapping.ElutionMapperAnimator
- Mapping.ElutionMapperCanvas
- Mapping.ElutionMapperPlotter
- Mapping.FewerPointMapper
- Mapping.ManualAdjuster
- Mapping.MapperConstructor
- Mapping.MappingOptimizer
- Mapping.MappingParams
- Mapping.MappingUtils
- Mapping.MappingV2Utils
- Mapping.PeakCurve
- Mapping.PeakMapper
- Mapping.PeakMappingRefiner
- Mapping.PeakMappingSolver
- Mapping.ReducedCurve
- Mapping.SimplestMapper
- Mapping.SingleComponent
- Mapping.SurveyUtils
- Submodules
- MD
- Menus
- Microfluidics
- Submodules
- Microfluidics.AverageSubtractorDialog
- Microfluidics.BackgroundMaker
- Microfluidics.ConcNormalizer
- Microfluidics.ConcNormalizerDialog
- Microfluidics.DataSubtractor
- Microfluidics.DelayAdjuster
- Microfluidics.DelayOptimizer
- Microfluidics.FlowSimulator
- Microfluidics.IndividualSubtractorDialog
- Microfluidics.InspectionInAngles
- Microfluidics.MctDecompDialog
- Microfluidics.MctRangeInfo
- Microfluidics.MethodAdjusterFrame
- Microfluidics.MethodFile
- Microfluidics.MethodFileSimulator
- Microfluidics.MicrofluidicElution
- Microfluidics.MicrofluidicMapping
- Microfluidics.MinimumSurface
- Microfluidics.PreprocessDialog
- Microfluidics.SimpleSolver
- Microfluidics.SimpleTutorial
- Microfluidics.SimpleUnfolding
- Microfluidics.SubtractorFrame
- Microfluidics.ThreeStateDimerSolver
- Microfluidics.ThreeStateMonomerSolver
- Microfluidics.TwoStateSolver
- Microfluidics.UnfoldingModel
- Microfluidics.UnfoldingTutorial
- Submodules
- ModelParams
- Submodules
- ModelParams.BaseSliderInfo
- ModelParams.BaselineParams
- ModelParams.BoundedSecParams
- ModelParams.EdmParams
- ModelParams.EdmParamsSheet
- ModelParams.EdmPlotUtils
- ModelParams.EdmSliderInfo
- ModelParams.EghAdjuster
- ModelParams.EghParams
- ModelParams.EghParamsSheet
- ModelParams.EghPlotUtils
- ModelParams.EmgPlotUtils
- ModelParams.FdEmgParams
- ModelParams.FdEmgParamsSheet
- ModelParams.LjEghParams
- ModelParams.LjEghParamsSheet
- ModelParams.ModelDebugUtils
- ModelParams.MonoporeSecParams
- ModelParams.ParamSetUtils
- ModelParams.ParamsSheetBase
- ModelParams.RtEmgParams
- ModelParams.RtEmgParamsSheet
- ModelParams.SdmParams
- ModelParams.SdmParamsSheet
- ModelParams.SdmPlotUtils
- ModelParams.SdmSliderInfo
- ModelParams.SeccolFunctions
- ModelParams.SimpleSecParams
- ModelParams.StcAdjuster
- ModelParams.StcParams
- ModelParams.StcParamsSheet
- ModelParams.StcPlotUtils
- Submodules
- Models
- Submodules
- Models.AffineContinuityDemo
- Models.CfsEvalPeaks
- Models.CfsEvalPeaksDemo
- Models.Characteristic
- Models.CharacteristicDemo
- Models.EGH
- Models.EMG
- Models.Egh2Emg
- Models.ElutionCurveModels
- Models.ElutionModelDemo
- Models.ElutionModelUtils
- Models.HistoryDemo
- Models.InvertibleSpline
- Models.ModelUtils
- Models.ModelUtilsException
- Models.MomentFitting
- Models.Proportional
- Models.ProportionalDemo
- Models.RateTheoryDemo
- Models.Tentative
- Models.TentativeDemo
- Submodules
- MultiProc
- MXD
- ObjectiveFunctions
- OnTheFly
- Optimizer
- Submodules
- Optimizer.AdhocFigure
- Optimizer.AllParameters
- Optimizer.AscDscDifference
- Optimizer.Asymptotical
- Optimizer.BackRunner
- Optimizer.BaselineOptimizer
- Optimizer.BasicOptimizer
- Optimizer.BoundaryView
- Optimizer.BoundsAnalysis
- Optimizer.BoundsInspection
- Optimizer.ColumnInterp
- Optimizer.ColumnInterpGPU
- Optimizer.ComplementaryView
- Optimizer.CompositeInfo
- Optimizer.DefaultNumPeaks
- Optimizer.DefaultNumPeaks-try
- Optimizer.Demo
- Optimizer.EghGradient
- Optimizer.ElutionComposer
- Optimizer.ElutionModelsGPU
- Optimizer.FactorCurvePlot
- Optimizer.FixedBaselineOptimizer
- Optimizer.FullOptDialog
- Optimizer.FullOptInput
- Optimizer.FullOptResult
- Optimizer.FullOptUtils
- Optimizer.FuncImporter
- Optimizer.FuncReloadUtils
- Optimizer.FunctionChanger
- Optimizer.FunctionDebugger
- Optimizer.FunctionDebuggerUtils
- Optimizer.FvScoreConverter
- Optimizer.FvScoreDetails
- Optimizer.FvScoreInspecor
- Optimizer.FvSynthesisOptimizer
- Optimizer.FvSynthesizer
- Optimizer.FvSynthesizerHistory
- Optimizer.GlobalInspector
- Optimizer.GuinierRg
- Optimizer.InitialInfo
- Optimizer.IntegerRatios
- Optimizer.JobStateCanvas
- Optimizer.JobStateInfo
- Optimizer.LrfExporter
- Optimizer.LrfOptimizer
- Optimizer.ModelDataSet
- Optimizer.ModifyStateDialog
- Optimizer.MwIntegrity
- Optimizer.NaviFrame
- Optimizer.NpSharedMemory
- Optimizer.NumComponents
- Optimizer.NumericalUtils
- Optimizer.OptConstants
- Optimizer.OptDataSets
- Optimizer.OptJobInfo
- Optimizer.OptJobResultInfo
- Optimizer.OptLogFile
- Optimizer.OptLrfInfo
- Optimizer.OptLrfInfoDebug
- Optimizer.OptStrategyDialog
- Optimizer.OptimalElution
- Optimizer.OptimizerMain
- Optimizer.OptimizerSettings
- Optimizer.OptimizerUtils
- Optimizer.ParameterTransition
- Optimizer.ParameterTransitionPlot
- Optimizer.ParamsAdjuster
- Optimizer.ParamsInspection
- Optimizer.ParamsIterator
- Optimizer.ParamsSelector
- Optimizer.PenaltyUtils
- Optimizer.RatioInterpretIllust
- Optimizer.ResidualView
- Optimizer.RestartPatcher
- Optimizer.ResultAnimation
- Optimizer.ResultFolderSelector
- Optimizer.ResultProxy
- Optimizer.RgCurveInspect
- Optimizer.RgDiscreteness
- Optimizer.RgSecUpdater
- Optimizer.RgVisibleFigure
- Optimizer.ScaleAdjustInspect
- Optimizer.ScoreTransition
- Optimizer.SecConformance
- Optimizer.SecInspection
- Optimizer.SettingsSerializer
- Optimizer.SimpleDebugUtils
- Optimizer.StateSequence
- Optimizer.StrategicOptimizer
- Optimizer.StrategyEditor
- Optimizer.StructureFactorBounds
- Optimizer.StructureFactorBoundsDemo
- Optimizer.SvdTutorial
- Optimizer.TheDebugUtils
- Optimizer.TheUtils
- Optimizer.TwoParamAnalysis
- Optimizer.UvBaselineEstimator
- Optimizer.ValidComponents
- Optimizer.WFM
- Optimizer.XrStateFigure
- Optimizer.XrUvScaleRatio
- Optimizer.optimizer
- Optimizer.temp
- Submodules
- Particles
- Peaks
- Submodules
- Peaks.EditCanvas
- Peaks.EghSupples
- Peaks.EghTauLimits
- Peaks.ElutionModels
- Peaks.Hyperbola
- Peaks.HyperbolaDemo
- Peaks.HyperbolaFit
- Peaks.ModeledCurve
- Peaks.MomentsUtils
- Peaks.PeProgressConstants
- Peaks.Peak
- Peaks.PeakDevel
- Peaks.PeakEditor
- Peaks.PeakEditorUtils
- Peaks.PeakFronting
- Peaks.PeakParamsSet
- Peaks.RobustCurve
- Peaks.RobustPeaks
- Peaks.WindowMapping
- Submodules
- Protein
- PSD
- Python
- QuickAnalysis
- Submodules
- QuickAnalysis.AnalysisGuide
- QuickAnalysis.Analyzer
- QuickAnalysis.AnalyzerDialogProxy
- QuickAnalysis.Homopeak
- QuickAnalysis.JudgeHolder
- QuickAnalysis.ModeledPeaks
- QuickAnalysis.ModeledPeaksTester
- QuickAnalysis.ParammedModel
- QuickAnalysis.PeakUtils
- QuickAnalysis.PreDecomposer
- QuickAnalysis.RgDiffRatios
- Submodules
- RangeEditors
- Submodules
- RangeEditors.DecompDummyDialog
- RangeEditors.DecompDummyFrame
- RangeEditors.DecompEditorDialog
- RangeEditors.DecompEditorFrame
- RangeEditors.DecompPlotUtils
- RangeEditors.DecompSpecPanel
- RangeEditors.RangeEditorDialog
- RangeEditors.RangeEditorFrame
- RangeEditors.RangeSpecFrame
- RangeEditors.SuperEditorFrame
- Submodules
- Rank
- ReAtsas
- Reports
- Submodules
- Reports.CharacterFormatter
- Reports.ClipboardConstants
- Reports.DatgnomExcelFormatter
- Reports.DatgnomResultBook
- Reports.DefaultFont
- Reports.ExcelEnvDepend
- Reports.GuinierAnalysisResultBook
- Reports.GuinierExcelFormatter
- Reports.ReportUtils
- Reports.SummaryBook
- Reports.SummaryExcelFormatter
- Reports.ZeroExExcelFormatter
- Reports.ZeroExtrapolationOverlayBook
- Reports.ZeroExtrapolationResultBook
- Submodules
- Rgg
- RgProcess
- Saxs
- SecSaxs
- SecTheory
- Submodules
- SecTheory.BasicModels
- SecTheory.BasicProofs
- SecTheory.BoundControl
- SecTheory.Cavazzini1999
- SecTheory.CavazziniProof
- SecTheory.ColumnConstants
- SecTheory.ColumnIllust
- SecTheory.ConformanceDemo
- SecTheory.CumsumInverse
- SecTheory.DiporeSecSimulation
- SecTheory.DiporeSimulation
- SecTheory.Distinction
- SecTheory.Dondi1986
- SecTheory.Dondi2002
- SecTheory.DondiProof
- SecTheory.Edm
- SecTheory.EdmDemo
- SecTheory.EdmSpike
- SecTheory.EghCompat
- SecTheory.ExclCurveUtils
- SecTheory.ExclusionCurveSpike
- SecTheory.Felinger2005
- SecTheory.FitTrialNonCf
- SecTheory.FoleyDorseyEmg
- SecTheory.HermansEmg
- SecTheory.InitialGuess
- SecTheory.LanJorgensonEgh
- SecTheory.LocalOptimizer
- SecTheory.LognormalPoreCF
- SecTheory.LognormalStudy
- SecTheory.MartinSynge
- SecTheory.MolassProof
- SecTheory.MomentAnalysis
- SecTheory.MonoPore
- SecTheory.MonoporeExclCurve
- SecTheory.MonoporeSecSimulation
- SecTheory.MonoporeSimulation
- SecTheory.MwRgFigure
- SecTheory.MwRgInfo
- SecTheory.NumPlates
- SecTheory.OligoporeExclCurve
- SecTheory.PeakAsymmetry
- SecTheory.PlateNumberEgh
- SecTheory.PlateTheory
- SecTheory.PoresizeFreedom
- SecTheory.RealisticProof
- SecTheory.RealisticSolver
- SecTheory.RetensionTime
- SecTheory.SecCF
- SecTheory.SecEstimator
- SecTheory.SecPDF
- SecTheory.SecParamsPlot
- SecTheory.SecParamsSurvey
- SecTheory.SecSimulator
- SecTheory.Sepsey2014
- SecTheory.Sepsey2014b
- SecTheory.SepseyProof
- SecTheory.ShapeRgFigure
- SecTheory.SinglePoreNonCf
- SecTheory.StochasticModels
- SecTheory.StochasticSolver
- SecTheory.T0UpperBound
- SecTheory.TriporeExclCurve
- SecTheory.TriporeSecSimulation
- SecTheory.TriporeSimulation
- SecTheory.compare_grm_to_emg
- Submodules
- SecTools
- Selective
- Submodules
- Selective.AdvancedAdapter
- Selective.AdvancedFrame
- Selective.BridgeUtils
- Selective.DataFilter
- Selective.DevelTest
- Selective.IftOptimizer
- Selective.KpdMinimizer
- Selective.LrfRgComputer
- Selective.LrfSource
- Selective.MinimizerUtils
- Selective.ModelFrameStatus
- Selective.ModelSelectFrame
- Selective.NumComponents
- Selective.PeakProxy
- Selective.PropOptimizer
- Selective.PropOptimizerEDM
- Selective.PropOptimizerEGH
- Selective.PropOptimizerEMG
- Selective.PropOptimizerImpl
- Selective.PropOptimizerSTC
- Selective.Proportions
- Selective.RdrChart
- Selective.RdrMinimizer
- Selective.StochasticAdapter
- Selective.V1ParamsAdapter
- Selective.VariedPropAnalysis
- Submodules
- SerialAnalyzer
- Submodules
- SerialAnalyzer.AbnormalityCheck
- SerialAnalyzer.AffineDemo
- SerialAnalyzer.AnalysisRangeManager
- SerialAnalyzer.AnalyzerUtil
- SerialAnalyzer.AnimObjects
- SerialAnalyzer.AveragingDiscussion
- SerialAnalyzer.BasePercentileOffset
- SerialAnalyzer.BasePlane
- SerialAnalyzer.BaseSurfaceSpline
- SerialAnalyzer.BpoDependencyDemo
- SerialAnalyzer.ConnectedIntervals
- SerialAnalyzer.CurveFeatures
- SerialAnalyzer.CurveSaverDialog
- SerialAnalyzer.CustomNavigationToolbar
- SerialAnalyzer.DataUtils
- SerialAnalyzer.DevSettings
- SerialAnalyzer.DeveloperOptions
- SerialAnalyzer.DraggableLine
- SerialAnalyzer.DraggablePoints
- SerialAnalyzer.DriftAnalyzer
- SerialAnalyzer.DriftLinearModel
- SerialAnalyzer.DriftSimulation
- SerialAnalyzer.ElutionBaseCurve
- SerialAnalyzer.ElutionCurve
- SerialAnalyzer.ElutionStainModel
- SerialAnalyzer.ElutionalSmootherUtils
- SerialAnalyzer.GuinierProofPlot
- SerialAnalyzer.GuinierStartSelector
- SerialAnalyzer.InputOutputDisplay
- SerialAnalyzer.InputSmootherAveraging
- SerialAnalyzer.LPM_Animation
- SerialAnalyzer.LinearityScore
- SerialAnalyzer.LowPercentileSpline
- SerialAnalyzer.LowRankSolver
- SerialAnalyzer.MakeItMoreClever
- SerialAnalyzer.MappingAutoHelper
- SerialAnalyzer.MappingZoomCanvas
- SerialAnalyzer.MplPlotCanvas
- SerialAnalyzer.NoExcelWarningDialog
- SerialAnalyzer.NormalVectorDiff
- SerialAnalyzer.OptimalSmoothing
- SerialAnalyzer.PairedRangeLogger
- SerialAnalyzer.PlateauRegions
- SerialAnalyzer.PlotAnnotation
- SerialAnalyzer.PreSyncViewer
- SerialAnalyzer.PrerecogProxy
- SerialAnalyzer.ProgressChart
- SerialAnalyzer.ProgressInfoUtil
- SerialAnalyzer.ProofPlot
- SerialAnalyzer.QuantileRegression
- SerialAnalyzer.QuantileRegressionKeras
- SerialAnalyzer.QuantileRegressionSklearn
- SerialAnalyzer.ResultGui
- SerialAnalyzer.ResultTable
- SerialAnalyzer.Scattering3dPlot
- SerialAnalyzer.Scattering3dSimple
- SerialAnalyzer.ScatteringBaseCorrector
- SerialAnalyzer.ScatteringBaseInvestigator
- SerialAnalyzer.ScatteringBaseUtil
- SerialAnalyzer.ScatteringBasecomposite
- SerialAnalyzer.ScatteringBasecurve
- SerialAnalyzer.ScatteringBasespline
- SerialAnalyzer.ScatteringBasesurface
- SerialAnalyzer.ScatteringPlot
- SerialAnalyzer.ScatteringViewUtils
- SerialAnalyzer.SdDebugger
- SerialAnalyzer.SerialAtsasTools
- SerialAnalyzer.SerialControlInfo
- SerialAnalyzer.SerialController
- SerialAnalyzer.SerialData
- SerialAnalyzer.SerialDataLoader
- SerialAnalyzer.SerialDataUtils
convert_to_the_least_shape()
find_conc_files()
get_file_no()
get_mtd_filename()
get_uv_filename()
get_xray_files()
load_intensity_files()
load_uv_array()
load_uv_file()
load_xray_files()
np_loadtxt_intensity()
sa_uv_loadtxt()
sa_uv_savetxt()
save_xray_base_profiles()
serial_np_loadtxt()
try_to_find_uv_in_any_txt()
- SerialAnalyzer.SerialTestUtils
- SerialAnalyzer.SettingsDialog
- SerialAnalyzer.SimulatedAnnealing
- SerialAnalyzer.SimulatedExtrapolation
- SerialAnalyzer.SpecialistOptions
- SerialAnalyzer.SphericalModel
- SerialAnalyzer.SphericalModelNew
- SerialAnalyzer.StageExtrapolation
- SerialAnalyzer.StageGuinier
- SerialAnalyzer.StageSummary
- SerialAnalyzer.Uv2dLpm
- SerialAnalyzer.UvBaseSurface
- SerialAnalyzer.ZeroExtrapolator
- SerialAnalyzer.create_icon_image
- Submodules
- SimTools
- Simulative
- Solvers
- SSDC
- Stochastic
- Synthesizer
- Submodules
- Synthesizer.AppVersion
- Synthesizer.AutoRunController
- Synthesizer.AutoRunTestTools
- Synthesizer.CommandController
- Synthesizer.CreateFolderDialog
- Synthesizer.CuntomizedPandasTable
- Synthesizer.DebugQueue
- Synthesizer.Development
- Synthesizer.ErrorLogCheck
- Synthesizer.GuiController
- Synthesizer.GuiPreferences
- Synthesizer.GuiSettingInfo
- Synthesizer.ImageSynthesizer
- Synthesizer.PilatusCounter
- Synthesizer.PilatusImage
- Synthesizer.PilatusImageInfoTable
- Synthesizer.PilatusImageInfoTable2
- Synthesizer.PilatusImageProperty
- Synthesizer.PilatusImageViewer
- Synthesizer.PilatusUtils
- Synthesizer.PilatusUtilsNewStyle
- Synthesizer.PilatusUtilsOldStyle
- Synthesizer.Preferences
- Synthesizer.SAnglerMask
- Synthesizer.SynthesizerCommandLineOptions
- Synthesizer.SynthesizerSettings
- Synthesizer.TestDataGenerator
- Synthesizer.ZoomPan
- Submodules
- Test
- Trimming
- Submodules
- Trimming.AutoRestrictor
- Trimming.AutoRestrictorProxy
- Trimming.CdLimit
- Trimming.CustomSigmoid
- Trimming.DataRange
- Trimming.DataRangeTestUtils
- Trimming.DiniSigmoid
- Trimming.EndingAnomaly
- Trimming.FlangeLimit
- Trimming.FlowChange
- Trimming.FlowChangeCandidates
- Trimming.FlowChangePrep
- Trimming.FlowChangeTestUtils
- Trimming.FlowChangeUtils
- Trimming.GradualRegionAnalysis
- Trimming.GuinierLimit
- Trimming.GuinierRegion
- Trimming.MatchingPeaks
- Trimming.MomentTrimming
- Trimming.OptViewRange
- Trimming.OptimalTrimming
- Trimming.OutlineFigure
- Trimming.OutlineFigureSaver
- Trimming.PeakRegion
- Trimming.PeakRegionTestUtils
- Trimming.PreliminaryRecognition
- Trimming.PreliminaryRg
- Trimming.Sigmoid
- Trimming.SigmoidApplicability
- Trimming.SigmoidChain
- Trimming.SigmoidDemo
- Trimming.SigmoidGuessX0
- Trimming.SpecialSigmoid
- Trimming.TrimmingDebugDnd
- Trimming.TrimmingDebugUtils
- Trimming.TrimmingInfo
- Trimming.TrimmingInspection
- Trimming.TrimmingResult
- Trimming.TrimmingUtils
- Trimming.UvBaseSolver
- Trimming.UvBaseSolverInfo
- Trimming.UvCorrector
- Trimming.UvCorrectorEgh
- Trimming.UvCorrectorIllust
- Trimming.UvCorrectorSpline
- Trimming.UvCorrectorTestUtils
- Trimming.UvDiffEffects
- Submodules
- Tutorials
- Submodules
- Tutorials.BhAnimation
- Tutorials.DualSpace
- Tutorials.LPM
- Tutorials.LinTranAnim
- Tutorials.LinTranAnim-back
- Tutorials.LinearEquations
- Tutorials.MatrixFactorization
- Tutorials.MfCorres
- Tutorials.MfTutorial0
- Tutorials.MpInverseAnim
- Tutorials.MpInverseAnim3D
- Tutorials.MpInverseBasic
- Tutorials.SvdAnimation
- Tutorials.SvdPrecision
- Tutorials.SvdTutorial2D
- Tutorials.SvdTutorial3D
- Tutorials.VoxelFFT
- Tutorials.VoxelUtils
- Tutorials.bh-2-1
- Tutorials.bh-2-1-1
- Tutorials.bh-2-2
- Tutorials.pythonRotate
- Submodules
- UV
- Submodules
- V2PropOptimizer
- Submodules
- V2PropOptimizer.PropOptMenu
- V2PropOptimizer.PropOptimizer
- V2PropOptimizer.PropOptimizerDialogs
- V2PropOptimizer.PropOptimizerEDM
- V2PropOptimizer.PropOptimizerEGH
- V2PropOptimizer.PropOptimizerSTC
- V2PropOptimizer.PropOptimizerUtils
- V2PropOptimizer.RdrChart
- V2PropOptimizer.V1PreviewAdapter
- V2PropOptimizer.V1RangeCoverter
- V2PropOptimizer.VariedPropAnalysis
- Submodules
- Wave